Baihan Lin

Baihan Lin, Nikolaus Kriegeskorte

A central question for neuroscience is how to characterize brain representations of perceptual and cognitive content. An ideal characterization should distinguish different functional regions with robustness to noise and idiosyncrasies of individual brains that do not correspond to computational differences. Previous studies have characterized brain representations by their representational geometry, which is defined by the representational dissimilarity matrix (RDM), a summary statistic that abstracts from the roles of individual neurons (or responses channels) and characterizes the discriminability of stimuli. Here we explore a further step of abstraction: from the geometry to the topology of brain representations. We propose topological representational similarity analysis (tRSA), an extension of representational similarity analysis (RSA) that uses a family of geo-topological summary statistics that generalizes the RDM to characterize the topology while de-emphasizing the geometry. We evaluate this new family of statistics in terms of the sensitivity and specificity for model selection using both simulations and fMRI data. In the simulations, the ground truth is a data-generating layer representation in a neural network model and the models are the same and other layers in different model instances (trained from different random seeds). In fMRI, the ground truth is a visual area and the models are the same and other areas measured in different subjects. Results show that topology-sensitive characterizations of population codes are robust to noise and interindividual variability and maintain excellent sensitivity to the unique representational signatures of different neural network layers and brain regions. These methods enable researchers to calibrate comparisons among representations in brains and models to be sensitive to the geometry, the topology, or a combination of both.

Baihan Lin, Djallel Bouneffouf, Guillermo Cecchi et al.

Recent advances in large language models (LLMs) have led to the development of powerful AI chatbots capable of engaging in natural and human-like conversations. However, these chatbots can be potentially harmful, exhibiting manipulative, gaslighting, and narcissistic behaviors. We define Healthy AI to be safe, trustworthy and ethical. To create healthy AI systems, we present the SafeguardGPT framework that uses psychotherapy to correct for these harmful behaviors in AI chatbots. The framework involves four types of AI agents: a Chatbot, a "User," a "Therapist," and a "Critic." We demonstrate the effectiveness of SafeguardGPT through a working example of simulating a social conversation. Our results show that the framework can improve the quality of conversations between AI chatbots and humans. Although there are still several challenges and directions to be addressed in the future, SafeguardGPT provides a promising approach to improving the alignment between AI chatbots and human values. By incorporating psychotherapy and reinforcement learning techniques, the framework enables AI chatbots to learn and adapt to human preferences and values in a safe and ethical way, contributing to the development of a more human-centric and responsible AI.

Baihan Lin, Djallel Bouneffouf, Guillermo Cecchi et al.

In this work, we compare different neural topic modeling methods in learning the topical propensities of different psychiatric conditions from the psychotherapy session transcripts parsed from speech recordings. We also incorporate temporal modeling to put this additional interpretability to action by parsing out topic similarities as a time series in a turn-level resolution. We believe this topic modeling framework can offer interpretable insights for the therapist to optimally decide his or her strategy and improve psychotherapy effectiveness.

Baihan Lin, Djallel Bouneffouf, Irina Rish

The field of compositional generalization is currently experiencing a renaissance in AI, as novel problem settings and algorithms motivated by various practical applications are being introduced, building on top of the classical compositional generalization problem. This article aims to provide a comprehensive review of top recent developments in multiple real-life applications of the compositional generalization. Specifically, we introduce a taxonomy of common applications and summarize the state-of-the-art for each of those domains. Furthermore, we identify important current trends and provide new perspectives pertaining to the future of this burgeoning field.

Baihan Lin, Guillermo Cecchi, Djallel Bouneffouf

The therapeutic working alliance is an important predictor of the outcome of the psychotherapy treatment. In practice, the working alliance is estimated from a set of scoring questionnaires in an inventory that both the patient and the therapists fill out. In this work, we propose an analytical framework of directly inferring the therapeutic working alliance from the natural language within the psychotherapy sessions in a turn-level resolution with deep embeddings such as the Doc2Vec and SentenceBERT models. The transcript of each psychotherapy session can be transcribed and generated in real-time from the session speech recordings, and these embedded dialogues are compared with the distributed representations of the statements in the working alliance inventory. We demonstrate, in a real-world dataset with over 950 sessions of psychotherapy treatments in anxiety, depression, schizophrenia and suicidal patients, the effectiveness of this method in mapping out trajectories of patient-therapist alignment and the interpretability that can offer insights in clinical psychiatry. We believe such a framework can be provide timely feedback to the therapist regarding the quality of the conversation in interview sessions.

Baihan Lin, Stefan Zecevic, Djallel Bouneffouf et al.

We present the TherapyView, a demonstration system to help therapists visualize the dynamic contents of past treatment sessions, enabled by the state-of-the-art neural topic modeling techniques to analyze the topical tendencies of various psychiatric conditions and deep learning-based image generation engine to provide a visual summary. The system incorporates temporal modeling to provide a time-series representation of topic similarities at a turn-level resolution and AI-generated artworks given the dialogue segments to provide a concise representations of the contents covered in the session, offering interpretable insights for therapists to optimize their strategies and enhance the effectiveness of psychotherapy. This system provides a proof of concept of AI-augmented therapy tools with e in-depth understanding of the patient's mental state and enabling more effective treatment.

Baihan Lin, Guillermo Cecchi, Djallel Bouneffouf

As a predictive measure of the treatment outcome in psychotherapy, the working alliance measures the agreement of the patient and the therapist in terms of their bond, task and goal. Long been a clinical quantity estimated by the patients' and therapists' self-evaluative reports, we believe that the working alliance can be better characterized using natural language processing technique directly in the dialogue transcribed in each therapy session. In this work, we propose the Working Alliance Transformer (WAT), a Transformer-based classification model that has a psychological state encoder which infers the working alliance scores by projecting the embedding of the dialogues turns onto the embedding space of the clinical inventory for working alliance. We evaluate our method in a real-world dataset with over 950 therapy sessions with anxiety, depression, schizophrenia and suicidal patients and demonstrate an empirical advantage of using information about the therapeutic states in this sequence classification task of psychotherapy dialogues.

Baihan Lin, Guillermo Cecchi, Djallel Bouneffouf

We introduce a Reinforcement Learning Psychotherapy AI Companion that generates topic recommendations for therapists based on patient responses. The system uses Deep Reinforcement Learning (DRL) to generate multi-objective policies for four different psychiatric conditions: anxiety, depression, schizophrenia, and suicidal cases. We present our experimental results on the accuracy of recommended topics using three different scales of working alliance ratings: task, bond, and goal. We show that the system is able to capture the real data (historical topics discussed by the therapists) relatively well, and that the best performing models vary by disorder and rating scale. To gain interpretable insights into the learned policies, we visualize policy trajectories in a 2D principal component analysis space and transition matrices. These visualizations reveal distinct patterns in the policies trained with different reward signals and trained on different clinical diagnoses. Our system's success in generating DIsorder-Specific Multi-Objective Policies (DISMOP) and interpretable policy dynamics demonstrates the potential of DRL in providing personalized and efficient therapeutic recommendations.

Baihan Lin

In recent years, reinforcement learning and bandits have transformed a wide range of real-world applications including healthcare, finance, recommendation systems, robotics, and last but not least, the speech and natural language processing. While most speech and language applications of reinforcement learning algorithms are centered around improving the training of deep neural networks with its flexible optimization properties, there are still many grounds to explore to utilize the benefits of reinforcement learning, such as its reward-driven adaptability, state representations, temporal structures and generalizability. In this survey, we present an overview of recent advancements of reinforcement learning and bandits, and discuss how they can be effectively employed to solve speech and natural language processing problems with models that are adaptive, interactive and scalable.

Yeldar Toleubay, Don Joven Agravante, Daiki Kimura et al.

In response to the global challenge of mental health problems, we proposes a Logical Neural Network (LNN) based Neuro-Symbolic AI method for the diagnosis of mental disorders. Due to the lack of effective therapy coverage for mental disorders, there is a need for an AI solution that can assist therapists with the diagnosis. However, current Neural Network models lack explainability and may not be trusted by therapists. The LNN is a Recurrent Neural Network architecture that combines the learning capabilities of neural networks with the reasoning capabilities of classical logic-based AI. The proposed system uses input predicates from clinical interviews to output a mental disorder class, and different predicate pruning techniques are used to achieve scalability and higher scores. In addition, we provide an insight extraction method to aid therapists with their diagnosis. The proposed system addresses the lack of explainability of current Neural Network models and provides a more trustworthy solution for mental disorder diagnosis.

Baihan Lin

Knowledge management systems (KMS) are in high demand for industrial researchers, chemical or research enterprises, or evidence-based decision making. However, existing systems have limitations in categorizing and organizing paper insights or relationships. Traditional databases are usually disjoint with logging systems, which limit its utility in generating concise, collated overviews. In this work, we briefly survey existing approaches of this problem space and propose a unified framework that utilizes relational databases to log hierarchical information to facilitate the research and writing process, or generate useful knowledge from references or insights from connected concepts. Our framework of bidirectional knowledge management system (BKMS) enables novel functionalities encompassing improved hierarchical note-taking, AI-assisted brainstorming, and multi-directional relationships. Potential applications include managing inventories and changes for manufacture or research enterprises, or generating analytic reports with evidence-based decision making.

Baihan Lin, Guillermo Cecchi, Djallel Bouneffouf

We propose a recommendation system that suggests treatment strategies to a therapist during the psychotherapy session in real-time. Our system uses a turn-level rating mechanism that predicts the therapeutic outcome by computing a similarity score between the deep embedding of a scoring inventory, and the current sentence that the patient is speaking. The system automatically transcribes a continuous audio stream and separates it into turns of the patient and of the therapist and perform real-time inference of their therapeutic working alliance. The dialogue pairs along with their computed working alliance as ratings are then fed into a deep reinforcement learning recommendation system where the sessions are treated as users and the topics are treated as items. Other than evaluating the empirical advantages of the core components on an existing dataset of psychotherapy sessions, we demonstrate the effectiveness of this system in a web app.

Baihan Lin

The absence of a conventional association between the cell-cell cohabitation and its emergent dynamics into cliques during development has hindered our understanding of how cell populations proliferate, differentiate, and compete, i.e. the cell ecology. With the recent advancement of the single-cell RNA-sequencing (RNA-seq), we can potentially describe such a link by constructing network graphs that characterize the similarity of the gene expression profiles of the cell-specific transcriptional programs, and analyzing these graphs systematically using the summary statistics informed by the algebraic topology. We propose the single-cell topological simplicial analysis (scTSA). Applying this approach to the single-cell gene expression profiles from local networks of cells in different developmental stages with different outcomes reveals a previously unseen topology of cellular ecology. These networks contain an abundance of cliques of single-cell profiles bound into cavities that guide the emergence of more complicated habitation forms. We visualize these ecological patterns with topological simplicial architectures of these networks, compared with the null models. Benchmarked on the single-cell RNA-seq data of zebrafish embryogenesis spanning 38,731 cells, 25 cell types and 12 time steps, our approach highlights the gastrulation as the most critical stage, consistent with consensus in developmental biology. As a nonlinear, model-independent, and unsupervised framework, our approach can also be applied to tracing multi-scale cell lineage, identifying critical stages, or creating pseudo-time series.

Baihan Lin

Emerging research frontiers and computational advances have gradually transformed cognitive science into a multidisciplinary and data-driven field. As a result, there is a proliferation of cognitive theories investigated and interpreted from different academic lens and in different levels of abstraction. We formulate this applied aspect of this challenge as the computational cognitive inference, and describe the major routes of computational approaches. To balance the potential optimism alongside the speed and scale of the data-driven era of cognitive science, we propose to inspect this trend in more empirical terms by identifying the operational challenges, societal impacts and ethical guidelines in conducting research and interpreting results from the computational inference in cognitive science.

Baihan Lin

As two popular schools of machine learning, online learning and evolutionary computations have become two important driving forces behind real-world decision making engines for applications in biomedicine, economics, and engineering fields. Although there are prior work that utilizes bandits to improve evolutionary algorithms' optimization process, it remains a field of blank on how evolutionary approach can help improve the sequential decision making tasks of online learning agents such as the multi-armed bandits. In this work, we propose the Genetic Thompson Sampling, a bandit algorithm that keeps a population of agents and update them with genetic principles such as elite selection, crossover and mutations. Empirical results in multi-armed bandit simulation environments and a practical epidemic control problem suggest that by incorporating the genetic algorithm into the bandit algorithm, our method significantly outperforms the baselines in nonstationary settings. Lastly, we introduce EvoBandit, a web-based interactive visualization to guide the readers through the entire learning process and perform lightweight evaluations on the fly. We hope to engage researchers into this growing field of research with this investigation.

Baihan Lin

Understanding the deep representations of complex networks is an important step of building interpretable and trustworthy machine learning applications in the age of internet. Global surrogate models that approximate the predictions of a black box model (e.g. an artificial or biological neural net) are usually used to provide valuable theoretical insights for the model interpretability. In order to evaluate how well a surrogate model can account for the representation in another model, we need to develop inference methods for model comparison. Previous studies have compared models and brains in terms of their representational geometries (characterized by the matrix of distances between representations of the input patterns in a model layer or cortical area). In this study, we propose to explore these summary statistical descriptions of representations in models and brains as part of a broader class of statistics that emphasize the topology as well as the geometry of representations. The topological summary statistics build on topological data analysis (TDA) and other graph-based methods. We evaluate these statistics in terms of the sensitivity and specificity that they afford when used for model selection, with the goal to relate different neural network models to each other and to make inferences about the computational mechanism that might best account for a black box representation. These new methods enable brain and computer scientists to visualize the dynamic representational transformations learned by brains and models, and to perform model-comparative statistical inference.

Baihan Lin, Xinxin Zhang

Speaker diarization is a task to label an audio or video recording with the identity of the speaker at each given time stamp. In this work, we propose a novel machine learning framework to conduct real-time multi-speaker diarization and recognition without prior registration and pretraining in a fully online and reinforcement learning setting. Our framework combines embedding extraction, clustering, and resegmentation into the same problem as an online decision-making problem. We discuss practical considerations and advanced techniques such as the offline reinforcement learning, semi-supervision, and domain adaptation to address the challenges of limited training data and out-of-distribution environments. Our approach considers speaker diarization as a fully online learning problem of the speaker recognition task, where the agent receives no pretraining from any training set before deployment, and learns to detect speaker identity on the fly through reward feedbacks. The paradigm of the reinforcement learning approach to speaker diarization presents an adaptive, lightweight, and generalizable system that is useful for multi-user teleconferences, where many people might come and go without extensive pre-registration ahead of time. Lastly, we provide a desktop application that uses our proposed approach as a proof of concept. To the best of our knowledge, this is the first approach to apply a reinforcement learning approach to the speaker diarization task.

Baihan Lin

Understanding how the brain represents and processes information is crucial for advancing neuroscience and artificial intelligence. Representational similarity analysis (RSA) has been instrumental in characterizing neural representations, but traditional RSA relies solely on geometric properties, overlooking crucial topological information. This thesis introduces Topological RSA (tRSA), a novel framework combining geometric and topological properties of neural representations. tRSA applies nonlinear monotonic transforms to representational dissimilarities, emphasizing local topology while retaining intermediate-scale geometry. The resulting geo-topological matrices enable model comparisons robust to noise and individual idiosyncrasies. This thesis introduces several key methodological advances: (1) Topological RSA (tRSA) for identifying computational signatures and testing topological hypotheses; (2) Adaptive Geo-Topological Dependence Measure (AGTDM) for detecting complex multivariate relationships; (3) Procrustes-aligned Multidimensional Scaling (pMDS) for revealing neural computation stages; (4) Temporal Topological Data Analysis (tTDA) for uncovering developmental trajectories; and (5) Single-cell Topological Simplicial Analysis (scTSA) for characterizing cell population complexity. Through analyses of neural recordings, biological data, and neural network simulations, this thesis demonstrates the power and versatility of these methods in understanding brains, computational models, and complex biological systems. They not only offer robust approaches for adjudicating among competing models but also reveal novel theoretical insights into the nature of neural computation. This work lays the foundation for future investigations at the intersection of topology, neuroscience, and time series analysis, paving the way for more nuanced understanding of brain function and dysfunction.

Leyla Roksan Caglar, Pedro A. M. Mediano, Baihan Lin

Generalization to novel visual conditions remains a central challenge for both human and machine vision, yet standard robustness metrics offer limited insight into how systems trade accuracy for robustness. We introduce a rate-distortion-theoretic framework that treats stimulus-response behavior as an effective communication channel, derives rate-distortion (RD) frontiers from confusion matrices, and summarizes each system with two interpretable geometric signatures - slope ($β$) and curvature ($κ$) - which capture the marginal cost and abruptness of accuracy-robustness trade-offs. Applying this framework to human psychophysics and 18 deep vision models under controlled image perturbations, we compare generalization geometry across model architectures and training regimes. We find that both biological and artificial systems follow a common lossy-compression principle but occupy systematically different regions of RD space. In particular, humans exhibit smoother, more flexible trade-offs, whereas modern deep networks operate in steeper and more brittle regimes even at matched accuracy. Across training regimes, robustness training induces systematic but dissociable shifts in beta/kappa, revealing cases where improved robustness or accuracy does not translate into more human-like generalization geometry. These results demonstrate that RD geometry provides a compact, model-agnostic lens for comparing generalization behavior across systems beyond standard accuracy-based metrics.

Joseph T. Colonel, Baihan Lin

Word clouds are a common way to summarize qualitative interviews, yet traditional frequency-based methods often fail in conversational contexts: they surface filler words, ignore paraphrase, and fragment semantically related ideas. This limits their usefulness in early-stage analysis, when researchers need fast, interpretable overviews of what participant actually said. We introduce ThemeClouds, an open-source visualization tool that uses large language models (LLMs) to generate thematic, participant-weighted word clouds from dialogue transcripts. The system prompts an LLM to identify concept-level themes across a corpus and then counts how many unique participants mention each topic, yielding a visualization grounded in breadth of mention rather than raw term frequency. Researchers can customize prompts and visualization parameters, providing transparency and control. Using interviews from a user study comparing five recording-device configurations (31 participants; 155 transcripts, Whisper ASR), our approach surfaces more actionable device concerns than frequency clouds and topic-modeling baselines (e.g., LDA, BERTopic). We discuss design trade-offs for integrating LLM assistance into qualitative workflows, implications for interpretability and researcher agency, and opportunities for interactive analyses such as per-condition contrasts (``diff clouds'').

Steven Au, Baihan Lin

We introduce PeReGrINE, a benchmark and evaluation framework for personalized review generation grounded in graph-structured user--item evidence. PeReGrINE restructures Amazon Reviews 2023 into a temporally consistent bipartite graph, where each target review is conditioned on bounded evidence from user history, item context, and neighborhood interactions under explicit temporal cutoffs. To represent persistent user preferences without conditioning directly on sparse raw histories, we compute a User Style Parameter that summarizes each user's linguistic and affective tendencies over prior reviews. This setup supports controlled comparison of four graph-derived retrieval settings: product-only, user-only, neighbor-only, and combined evidence. Beyond standard generation metrics, we introduce Dissonance Analysis, a macro-level evaluation framework that measures deviation from expected user style and product-level consensus. We also study visual evidence as an auxiliary context source and find that it can improve textual quality in some settings, while graph-derived evidence remains the main driver of personalization and consistency. Across product categories, PeReGrINE offers a reproducible way to study how evidence composition affects review fidelity, personalization, and grounding in retrieval-conditioned language models.

Zongqi Cui, Baihan Lin

Negotiation agents must infer what their counterpart values, update those beliefs over dialogue turns, and choose actions under uncertainty. End-to-end large language models (LLMs) can imitate negotiation dialogue, but their opponent beliefs are usually implicit and difficult to inspect. We propose BOND (Bayesian Opponent-belief Negotiation Distillation), a framework for auditable negotiation. BOND consists of an LLM-based Bayesian teacher that scores dialogue contexts against the six possible opponent priority orderings, updates a posterior over those orderings, and uses the posterior for menu-based decision making, as well as a smaller 8B student language model that emits both negotiation actions and normalized posterior beliefs as tagged text. In the CaSiNo negotiation dataset, BOND outperforms the state-of-the-art and achieves mean Brier score 0.085 over opponent-priority posteriors. The distilled student preserves much of this belief signal, achieving Brier 0.114, below the uniform six-ordering reference of 5/36, approximately 0.139. Compared with a 70B structured-CoT baseline, the significantly smaller 8B student model yields substantially better elicited posterior calibration. We further showcase auditability through posterior trajectories, belief-versus-policy error decomposition, and posterior-prefix interventions. These diagnostics reveal that distillation preserves a scoreable belief report more strongly than causal belief-conditioned control, making weak belief-action coupling visible, not hidden.

Leyla Roksan Caglar, Pedro A. M. Mediano, Baihan Lin

Humans and modern vision models can reach similar classification accuracy while making systematically different kinds of mistakes - differing not in how often they err, but in who gets mistaken for whom, and in which direction. We show that these directional confusions reveal distinct inductive biases that are invisible to accuracy alone. Using matched human and deep vision model responses on a natural-image categorization task under 12 perturbation types, we quantify asymmetry in confusion matrices and link it to generalization geometry through a Rate-Distortion (RD) framework, summarized by three geometric signatures (slope (beta), curvature (kappa)) and efficiency (AUC). We find that humans exhibit broad but weak asymmetries, whereas deep vision models show sparser, stronger directional collapses. Robustness training reduces global asymmetry but fails to recover the human-like breadth-strength profile of graded similarity. Mechanistic simulations further show that different asymmetry organizations shift the RD frontier in opposite directions, even when matched for performance. Together, these results position directional confusions and RD geometry as compact, interpretable signatures of inductive bias under distribution shift.

Baihan Lin, Djallel Bouneffouf, Yulia Landa et al.

The therapeutic working alliance is a critical predictor of psychotherapy success. Traditionally, working alliance assessment relies on questionnaires completed by both therapists and patients. In this paper, we present COMPASS, a novel framework to directly infer the therapeutic working alliance from the natural language used in psychotherapy sessions. Our approach leverages advanced large language models (LLMs) to analyze session transcripts and map them to distributed representations. These representations capture the semantic similarities between the dialogues and psychometric instruments, such as the Working Alliance Inventory. Analyzing a dataset of over 950 sessions spanning diverse psychiatric conditions -- including anxiety (N=498), depression (N=377), schizophrenia (N=71), and suicidal tendencies (N=12) -- collected between 1970 and 2012, we demonstrate the effectiveness of our method in providing fine-grained mapping of patient-therapist alignment trajectories, offering interpretable insights for clinical practice, and identifying emerging patterns related to the condition being treated. By employing various deep learning-based topic modeling techniques in combination with prompting generative language models, we analyze the topical characteristics of different psychiatric conditions and how these topics evolve during each turn of the conversation. This integrated framework enhances the understanding of therapeutic interactions, enables timely feedback for therapists on the quality of therapeutic relationships, and provides clear, actionable insights to improve the effectiveness of psychotherapy.

Baihan Lin

What is the true heart of mental healthcare -- innovation or humanity? Can virtual therapy ever replicate the profound human bonds where healing arises? As artificial intelligence and immersive technologies promise expanded access, safeguards must ensure technologies remain supplementary tools guided by providers' wisdom. Implementation requires nuance balancing efficiency and empathy. If conscious of ethical risks, perhaps AI could restore humanity by automating tasks, giving providers more time to listen. Yet no algorithm can replicate the seat of dignity within. We must ask ourselves: What future has people at its core? One where AI thoughtfully plays a collaborative role? Or where pursuit of progress leaves vulnerability behind? This commentary argues for a balanced approach thoughtfully integrating technology while retaining care's irreplaceable human essence, at the heart of this profoundly human profession. Ultimately, by nurturing innovation and humanity together, perhaps we reach new heights of empathy previously unimaginable.

Aylin Gunal, Baihan Lin, Djallel Bouneffouf

Given the increasing demand for mental health assistance, artificial intelligence (AI), particularly large language models (LLMs), may be valuable for integration into automated clinical support systems. In this work, we leverage a decision transformer architecture for topic recommendation in counseling conversations between patients and mental health professionals. The architecture is utilized for offline reinforcement learning, and we extract states (dialogue turn embeddings), actions (conversation topics), and rewards (scores measuring the alignment between patient and therapist) from previous turns within a conversation to train a decision transformer model. We demonstrate an improvement over baseline reinforcement learning methods, and propose a novel system of utilizing our model's output as synthetic labels for fine-tuning a large language model for the same task. Although our implementation based on LLaMA-2 7B has mixed results, future work can undoubtedly build on the design.

Baihan Lin

Neurological conditions affecting visual perception create profound experiential divides between affected individuals and their caregivers, families, and medical professionals. We present the Perceptual Reality Transformer, a comprehensive framework employing six distinct neural architectures to simulate eight neurological perception conditions with scientifically-grounded visual transformations. Our system learns mappings from natural images to condition-specific perceptual states, enabling others to experience approximations of simultanagnosia, prosopagnosia, ADHD attention deficits, visual agnosia, depression-related changes, anxiety tunnel vision, and Alzheimer's memory effects. Through systematic evaluation across ImageNet and CIFAR-10 datasets, we demonstrate that Vision Transformer architectures achieve optimal performance, outperforming traditional CNN and generative approaches. Our work establishes the first systematic benchmark for neurological perception simulation, contributes novel condition-specific perturbation functions grounded in clinical literature, and provides quantitative metrics for evaluating simulation fidelity. The framework has immediate applications in medical education, empathy training, and assistive technology development, while advancing our fundamental understanding of how neural networks can model atypical human perception.

Baihan Lin

What if the patterns hidden within dialogue reveal more about communication than the words themselves? We introduce Conversational DNA, a novel visual language that treats any dialogue -- whether between humans, between human and AI, or among groups -- as a living system with interpretable structure that can be visualized, compared, and understood. Unlike traditional conversation analysis that reduces rich interaction to statistical summaries, our approach reveals the temporal architecture of dialogue through biological metaphors. Linguistic complexity flows through strand thickness, emotional trajectories cascade through color gradients, conversational relevance forms through connecting elements, and topic coherence maintains structural integrity through helical patterns. Through exploratory analysis of therapeutic conversations and historically significant human-AI dialogues, we demonstrate how this visualization approach reveals interaction patterns that traditional methods miss. Our work contributes a new creative framework for understanding communication that bridges data visualization, human-computer interaction, and the fundamental question of what makes dialogue meaningful in an age where humans increasingly converse with artificial minds.

Baihan Lin, Djallel Bouneffouf

In light of the COVID-19 pandemic, it is an open challenge and critical practical problem to find a optimal way to dynamically prescribe the best policies that balance both the governmental resources and epidemic control in different countries and regions. To solve this multi-dimensional tradeoff of exploitation and exploration, we formulate this technical challenge as a contextual combinatorial bandit problem that jointly optimizes a multi-criteria reward function. Given the historical daily cases in a region and the past intervention plans in place, the agent should generate useful intervention plans that policy makers can implement in real time to minimizing both the number of daily COVID-19 cases and the stringency of the recommended interventions. We prove this concept with simulations of multiple realistic policy making scenarios and demonstrate a clear advantage in providing a pareto optimal solution in the epidemic intervention problem.

Baihan Lin, Djallel Bouneffouf, Guillermo Cecchi

Unlike traditional time series, the action sequences of human decision making usually involve many cognitive processes such as beliefs, desires, intentions, and theory of mind, i.e., what others are thinking. This makes predicting human decision-making challenging to be treated agnostically to the underlying psychological mechanisms. We propose here to use a recurrent neural network architecture based on long short-term memory networks (LSTM) to predict the time series of the actions taken by human subjects engaged in gaming activity, the first application of such methods in this research domain. In this study, we collate the human data from 8 published literature of the Iterated Prisoner's Dilemma comprising 168,386 individual decisions and post-process them into 8,257 behavioral trajectories of 9 actions each for both players. Similarly, we collate 617 trajectories of 95 actions from 10 different published studies of Iowa Gambling Task experiments with healthy human subjects. We train our prediction networks on the behavioral data and demonstrate a clear advantage over the state-of-the-art methods in predicting human decision-making trajectories in both the single-agent scenario of the Iowa Gambling Task and the multi-agent scenario of the Iterated Prisoner's Dilemma. Moreover, we observe that the weights of the LSTM networks modeling the top performers tend to have a wider distribution compared to poor performers, as well as a larger bias, which suggest possible interpretations for the distribution of strategies adopted by each group.

Baihan Lin

We considered a novel practical problem of online learning with episodically revealed rewards, motivated by several real-world applications, where the contexts are nonstationary over different episodes and the reward feedbacks are not always available to the decision making agents. For this online semi-supervised learning setting, we introduced Background Episodic Reward LinUCB (BerlinUCB), a solution that easily incorporates clustering as a self-supervision module to provide useful side information when rewards are not observed. Our experiments on a variety of datasets, both in stationary and nonstationary environments of six different scenarios, demonstrated clear advantages of the proposed approach over the standard contextual bandit. Lastly, we introduced a relevant real-life example where this problem setting is especially useful.

Baihan Lin, Djallel Bouneffouf, Guillermo Cecchi

As an important psychological and social experiment, the Iterated Prisoner's Dilemma (IPD) treats the choice to cooperate or defect as an atomic action. We propose to study the behaviors of online learning algorithms in the Iterated Prisoner's Dilemma (IPD) game, where we investigate the full spectrum of reinforcement learning agents: multi-armed bandits, contextual bandits and reinforcement learning. We evaluate them based on a tournament of iterated prisoner's dilemma where multiple agents can compete in a sequential fashion. This allows us to analyze the dynamics of policies learned by multiple self-interested independent reward-driven agents, and also allows us study the capacity of these algorithms to fit the human behaviors. Results suggest that considering the current situation to make decision is the worst in this kind of social dilemma game. Multiples discoveries on online learning behaviors and clinical validations are stated, as an effort to connect artificial intelligence algorithms with human behaviors and their abnormal states in neuropsychiatric conditions.

Baihan Lin, Xinxin Zhang

We proposed a novel machine learning framework to conduct real-time multi-speaker diarization and recognition without prior registration and pretraining in a fully online learning setting. Our contributions are two-fold. First, we proposed a new benchmark to evaluate the rarely studied fully online speaker diarization problem. We built upon existing datasets of real world utterances to automatically curate MiniVox, an experimental environment which generates infinite configurations of continuous multi-speaker speech stream. Second, we considered the practical problem of online learning with episodically revealed rewards and introduced a solution based on semi-supervised and self-supervised learning methods. Additionally, we provided a workable web-based recognition system which interactively handles the cold start problem of new user's addition by transferring representations of old arms to new ones with an extendable contextual bandit. We demonstrated that our proposed method obtained robust performance in the online MiniVox framework.

Baihan Lin, Guillermo Cecchi, Djallel Bouneffouf et al.

Artificial behavioral agents are often evaluated based on their consistent behaviors and performance to take sequential actions in an environment to maximize some notion of cumulative reward. However, human decision making in real life usually involves different strategies and behavioral trajectories that lead to the same empirical outcome. Motivated by clinical literature of a wide range of neurological and psychiatric disorders, we propose here a more general and flexible parametric framework for sequential decision making that involves a two-stream reward processing mechanism. We demonstrated that this framework is flexible and unified enough to incorporate a family of problems spanning multi-armed bandits (MAB), contextual bandits (CB) and reinforcement learning (RL), which decompose the sequential decision making process in different levels. Inspired by the known reward processing abnormalities of many mental disorders, our clinically-inspired agents demonstrated interesting behavioral trajectories and comparable performance on simulated tasks with particular reward distributions, a real-world dataset capturing human decision-making in gambling tasks, and the PacMan game across different reward stationarities in a lifelong learning setting.

Baihan Lin

This paper proposed a new interaction paradigm in the virtual reality (VR) environments, which consists of a virtual mirror or window projected onto a virtual surface, representing the correct perspective geometry of a mirror or window reflecting the real world. This technique can be applied to various videos, live streaming apps, augmented and virtual reality settings to provide an interactive and immersive user experience. To support such a perspective-accurate representation, we implemented computer vision algorithms for feature detection and correspondence matching. To constrain the solutions, we incorporated an automatically tuning scaling factor upon the homography transform matrix such that each image frame follows a smooth transition with the user in sight. The system is a real-time rendering framework where users can engage their real-life presence with the virtual space.

Baihan Lin, Marieke Mur, Tim Kietzmann et al.

Representational similarity analysis (RSA) has been shown to be an effective framework to characterize brain-activity profiles and deep neural network activations as representational geometry by computing the pairwise distances of the response patterns as a representational dissimilarity matrix (RDM). However, how to properly analyze and visualize the representational geometry as dynamics over the time course from stimulus onset to offset is not well understood. In this work, we formulated the pipeline to understand representational dynamics with RDM movies and Procrustes-aligned Multidimensional Scaling (pMDS), and applied it to neural recording of monkey IT cortex. Our results suggest that the the multidimensional scaling alignment can genuinely capture the dynamics of the category-specific representation spaces with multiple visualization possibilities, and that object categorization may be hierarchical, multi-staged, and oscillatory (or recurrent).

Baihan Lin, Guillermo Cecchi, Djallel Bouneffouf et al.

Drawing an inspiration from behavioral studies of human decision making, we propose here a more general and flexible parametric framework for reinforcement learning that extends standard Q-learning to a two-stream model for processing positive and negative rewards, and allows to incorporate a wide range of reward-processing biases -- an important component of human decision making which can help us better understand a wide spectrum of multi-agent interactions in complex real-world socioeconomic systems, as well as various neuropsychiatric conditions associated with disruptions in normal reward processing. From the computational perspective, we observe that the proposed Split-QL model and its clinically inspired variants consistently outperform standard Q-Learning and SARSA methods, as well as recently proposed Double Q-Learning approaches, on simulated tasks with particular reward distributions, a real-world dataset capturing human decision-making in gambling tasks, and the Pac-Man game in a lifelong learning setting across different reward stationarities.

Baihan Lin, Djallel Bouneffouf, Guillermo Cecchi

Drawing an inspiration from behavioral studies of human decision making, we propose here a general parametric framework for a reinforcement learning problem, which extends the standard Q-learning approach to incorporate a two-stream framework of reward processing with biases biologically associated with several neurological and psychiatric conditions, including Parkinson's and Alzheimer's diseases, attention-deficit/hyperactivity disorder (ADHD), addiction, and chronic pain. For AI community, the development of agents that react differently to different types of rewards can enable us to understand a wide spectrum of multi-agent interactions in complex real-world socioeconomic systems. Moreover, from the behavioral modeling perspective, our parametric framework can be viewed as a first step towards a unifying computational model capturing reward processing abnormalities across multiple mental conditions and user preferences in long-term recommendation systems.

Baihan Lin

Inspired by the adaptation phenomenon of neuronal firing, we propose the regularity normalization (RN) as an unsupervised attention mechanism (UAM) which computes the statistical regularity in the implicit space of neural networks under the Minimum Description Length (MDL) principle. Treating the neural network optimization process as a partially observable model selection problem, the regularity normalization constrains the implicit space by a normalization factor, the universal code length. We compute this universal code incrementally across neural network layers and demonstrate the flexibility to include data priors such as top-down attention and other oracle information. Empirically, our approach outperforms existing normalization methods in tackling limited, imbalanced and non-stationary input distribution in image classification, classic control, procedurally-generated reinforcement learning, generative modeling, handwriting generation and question answering tasks with various neural network architectures. Lastly, the unsupervised attention mechanisms is a useful probing tool for neural networks by tracking the dependency and critical learning stages across layers and recurrent time steps of deep networks.

Baihan Lin, Nikolaus Kriegeskorte

Testing two potentially multivariate variables for statistical dependence on the basis finite samples is a fundamental statistical challenge. Here we explore a family of tests that adapt to the complexity of the relationship between the variables, promising robust power across scenarios. Building on the distance correlation, we introduce a family of adaptive independence criteria based on nonlinear monotonic transformations of distances. We show that these criteria, like the distance correlation and RKHS-based criteria, provide dependence indicators. We propose a class of adaptive (multi-threshold) test statistics, which form the basis for permutation tests. These tests empirically outperform some of the established tests in average and worst-case statistical sensitivity across a range of univariate and multivariate relationships, offer useful insights to the data and may deserve further exploration.

Baihan Lin, Djallel Bouneffouf, Guillermo Cecchi et al.

We consider an online decision making setting known as contextual bandit problem, and propose an approach for improving contextual bandit performance by using an adaptive feature extraction (representation learning) based on online clustering. Our approach starts with an off-line pre-training on unlabeled history of contexts (which can be exploited by our approach, but not by the standard contextual bandit), followed by an online selection and adaptation of encoders. Specifically, given an input sample (context), the proposed approach selects the most appropriate encoding function to extract a feature vector which becomes an input for a contextual bandit, and updates both the bandit and the encoding function based on the context and on the feedback (reward). Our experiments on a variety of datasets, and both in stationary and non-stationary environments of several kinds demonstrate clear advantages of the proposed adaptive representation learning over the standard contextual bandit based on "raw" input contexts.

Avinash Bukkittu, Baihan Lin, Trung Vu et al.

We search for digital biomarkers from Parkinson's Disease by observing approximate repetitive patterns matching hypothesized step and stride periodic cycles. These observations were modeled as a cycle of hidden states with randomness allowing deviation from a canonical pattern of transitions and emissions, under the hypothesis that the averaged features of hidden states would serve to informatively characterize classes of patients/controls. We propose a Hidden Semi-Markov Model (HSMM), a latent-state model, emitting 3D-acceleration vectors. Transitions and emissions are inferred from data. We fit separate models per unique device and training label. Hidden Markov Models (HMM) force geometric distributions of the duration spent at each state before transition to a new state. Instead, our HSMM allows us to specify the distribution of state duration. This modified version is more effective because we are interested more in each state's duration than the sequence of distinct states, allowing inclusion of these durations the feature vector.