João P. Papa

Guilherme C. Oliveira, Gustavo H. Rosa, Daniel C. G. Pedronette et al. · microsoft-research

Deep learning applications for assessing medical images are limited because the datasets are often small and imbalanced. The use of synthetic data has been proposed in the literature, but neither a robust comparison of the different methods nor generalizability has been reported. Our approach integrates a retinal image quality assessment model and StyleGAN2 architecture to enhance Age-related Macular Degeneration (AMD) detection capabilities and improve generalizability. This work compares ten different Generative Adversarial Network (GAN) architectures to generate synthetic eye-fundus images with and without AMD. We combined subsets of three public databases (iChallenge-AMD, ODIR-2019, and RIADD) to form a single training and test set. We employed the STARE dataset for external validation, ensuring a comprehensive assessment of the proposed approach. The results show that StyleGAN2 reached the lowest Frechet Inception Distance (166.17), and clinicians could not accurately differentiate between real and synthetic images. ResNet-18 architecture obtained the best performance with 85% accuracy and outperformed the two human experts (80% and 75%) in detecting AMD fundus images. The accuracy rates were 82.8% for the test set and 81.3% for the STARE dataset, demonstrating the model's generalizability. The proposed methodology for synthetic medical image generation has been validated for robustness and accuracy, with free access to its code for further research and development in this field.

Mateus Roder, Jurandy Almeida, Gustavo H. de Rosa et al. · microsoft-research

In the last decade, exponential data growth supplied machine learning-based algorithms' capacity and enabled their usage in daily-life activities. Additionally, such an improvement is partially explained due to the advent of deep learning techniques, i.e., stacks of simple architectures that end up in more complex models. Although both factors produce outstanding results, they also pose drawbacks regarding the learning process as training complex models over large datasets are expensive and time-consuming. Such a problem is even more evident when dealing with video analysis. Some works have considered transfer learning or domain adaptation, i.e., approaches that map the knowledge from one domain to another, to ease the training burden, yet most of them operate over individual or small blocks of frames. This paper proposes a novel approach to map the knowledge from action recognition to event recognition using an energy-based model, denoted as Spectral Deep Belief Network. Such a model can process all frames simultaneously, carrying spatial and temporal information through the learning process. The experimental results conducted over two public video dataset, the HMDB-51 and the UCF-101, depict the effectiveness of the proposed model and its reduced computational burden when compared to traditional energy-based models, such as Restricted Boltzmann Machines and Deep Belief Networks.

Renato W. R. de Souza, João V. C. de Oliveira, Leandro A. Passos et al.

In the past decades, fuzzy logic has played an essential role in many research areas. Alongside, graph-based pattern recognition has shown to be of great importance due to its flexibility in partitioning the feature space using the background from graph theory. Some years ago, a new framework for both supervised, semi-supervised, and unsupervised learning named Optimum-Path Forest (OPF) was proposed with competitive results in several applications, besides comprising a low computational burden. In this paper, we propose the Fuzzy Optimum-Path Forest, an improved version of the standard OPF classifier that learns the samples' membership in an unsupervised fashion, which are further incorporated during supervised training. Such information is used to identify the most relevant training samples, thus improving the classification step. Experiments conducted over twelve public datasets highlight the robustness of the proposed approach, which behaves similarly to standard OPF in worst-case scenarios.

Luiz C. F. Ribeiro, Mateus Roder, Gustavo H. de Rosa et al. · microsoft-research

The continuous computational power growth in the last decades has made solving several optimization problems significant to humankind a tractable task; however, tackling some of them remains a challenge due to the overwhelming amount of candidate solutions to be evaluated, even by using sophisticated algorithms. In such a context, a set of nature-inspired stochastic methods, called meta-heuristic optimization, can provide robust approximate solutions to different kinds of problems with a small computational burden, such as derivative-free real function optimization. Nevertheless, these methods may converge to inadequate solutions if the function landscape is too harsh, e.g., enclosing too many local optima. Previous works addressed this issue by employing a hypercomplex representation of the search space, like quaternions, where the landscape becomes smoother and supposedly easier to optimize. Under this approach, meta-heuristic computations happen in the hypercomplex space, whereas variables are mapped back to the real domain before function evaluation. Despite this latter operation being performed by the Euclidean norm, we have found that after the optimization procedure has finished, it is usually possible to obtain even better solutions by employing the Minkowski $p$-norm instead and fine-tuning $p$ through an auxiliary sub-problem with neglecting additional cost and no hyperparameters. Such behavior was observed in eight well-established benchmarking functions, thus fostering a new research direction for hypercomplex meta-heuristic optimization.

Daniel F. S. Santos, Rafael G. Pires, Leandro A. Passos et al.

Research on remote sensing image classification significantly impacts essential human routine tasks such as urban planning and agriculture. Nowadays, the rapid advance in technology and the availability of many high-quality remote sensing images create a demand for reliable automation methods. The current paper proposes two novel deep learning-based architectures for image classification purposes, i.e., the Discriminant Deep Image Prior Network and the Discriminant Deep Image Prior Network+, which combine Deep Image Prior and Triplet Networks learning strategies. Experiments conducted over three well-known public remote sensing image datasets achieved state-of-the-art results, evidencing the effectiveness of using deep image priors for remote sensing image classification.

Talita A. Pereira, Regina C. Popim, Leandro A. Passos et al.

Complex wounds usually face partial or total loss of skin thickness, healing by secondary intention. They can be acute or chronic, figuring infections, ischemia and tissue necrosis, and association with systemic diseases. Research institutes around the globe report countless cases, ending up in a severe public health problem, for they involve human resources (e.g., physicians and health care professionals) and negatively impact life quality. This paper presents a new database for automatically categorizing complex wounds with five categories, i.e., non-wound area, granulation, fibrinoid tissue, and dry necrosis, hematoma. The images comprise different scenarios with complex wounds caused by pressure, vascular ulcers, diabetes, burn, and complications after surgical interventions. The dataset, called ComplexWoundDB, is unique because it figures pixel-level classifications from $27$ images obtained in the wild, i.e., images are collected at the patients' homes, labeled by four health professionals. Further experiments with distinct machine learning techniques evidence the challenges in addressing the problem of computer-aided complex wound tissue categorization. The manuscript sheds light on future directions in the area, with a detailed comparison among other databased widely used in the literature.

Daniel F. S. Santos, Rafael G. Pires, Danilo Colombo et al.

Scene change detection is an image processing problem related to partitioning pixels of a digital image into foreground and background regions. Mostly, visual knowledge-based computer intelligent systems, like traffic monitoring, video surveillance, and anomaly detection, need to use change detection techniques. Amongst the most prominent detection methods, there are the learning-based ones, which besides sharing similar training and testing protocols, differ from each other in terms of their architecture design strategies. Such architecture design directly impacts on the quality of the detection results, and also in the device resources capacity, like memory. In this work, we propose a novel Multiscale Cascade Residual Convolutional Neural Network that integrates multiscale processing strategy through a Residual Processing Module, with a Segmentation Convolutional Neural Network. Experiments conducted on two different datasets support the effectiveness of the proposed approach, achieving average overall $\boldsymbol{F\text{-}measure}$ results of $\boldsymbol{0.9622}$ and $\boldsymbol{0.9664}$ over Change Detection 2014 and PetrobrasROUTES datasets respectively, besides comprising approximately eight times fewer parameters. Such obtained results place the proposed technique amongst the top four state-of-the-art scene change detection methods.

Daniel F. S. Santos, Rafael G. Pires, Danilo Colombo et al.

Video segmentation consists of a frame-by-frame selection process of meaningful areas related to foreground moving objects. Some applications include traffic monitoring, human tracking, action recognition, efficient video surveillance, and anomaly detection. In these applications, it is not rare to face challenges such as abrupt changes in weather conditions, illumination issues, shadows, subtle dynamic background motions, and also camouflage effects. In this work, we address such shortcomings by proposing a novel deep learning video segmentation approach that incorporates residual information into the foreground detection learning process. The main goal is to provide a method capable of generating an accurate foreground detection given a grayscale video. Experiments conducted on the Change Detection 2014 and on the private dataset PetrobrasROUTES from Petrobras support the effectiveness of the proposed approach concerning some state-of-the-art video segmentation techniques, with overall F-measures of $\mathbf{0.9535}$ and $\mathbf{0.9636}$ in the Change Detection 2014 and PetrobrasROUTES datasets, respectively. Such a result places the proposed technique amongst the top 3 state-of-the-art video segmentation methods, besides comprising approximately seven times less parameters than its top one counterpart.

Lucas Biaggi, João P. Papa, Kelton A. P Costa et al.

Identifying anomalies has become one of the primary strategies towards security and protection procedures in computer networks. In this context, machine learning-based methods emerge as an elegant solution to identify such scenarios and learn irrelevant information so that a reduction in the identification time and possible gain in accuracy can be obtained. This paper proposes a novel feature selection approach called Finite Element Machines for Feature Selection (FEMa-FS), which uses the framework of finite elements to identify the most relevant information from a given dataset. Although FEMa-FS can be applied to any application domain, it has been evaluated in the context of anomaly detection in computer networks. The outcomes over two datasets showed promising results.

Claudio Filipi Goncalves do Santos, Mateus Roder, Leandro A. Passos et al.

In the last decade, exponential data growth supplied the machine learning-based algorithms' capacity and enabled their usage in daily life activities. Additionally, such an improvement is partially explained due to the advent of deep learning techniques, i.e., stacks of simple architectures that end up in more complex models. Although both factors produce outstanding results, they also pose drawbacks regarding the learning process since training complex models denotes an expensive task and results are prone to overfit the training data. A supervised regularization technique called MaxDropout was recently proposed to tackle the latter, providing several improvements concerning traditional regularization approaches. In this paper, we present its improved version called MaxDropoutV2. Results considering two public datasets show that the model performs faster than the standard version and, in most cases, provides more accurate results.

Luis C. S. Afonso, Clayton R. Pereira, Silke A. T. Weber et al.

Bag-of-Visual Words (BoVW) and deep learning techniques have been widely used in several domains, which include computer-assisted medical diagnoses. In this work, we are interested in developing tools for the automatic identification of Parkinson's disease using machine learning and the concept of BoVW. The proposed approach concerns a hierarchical-based learning technique to design visual dictionaries through the Deep Optimum-Path Forest classifier. The proposed method was evaluated in six datasets derived from data collected from individuals when performing handwriting exams. Experimental results showed the potential of the technique, with robust achievements.

Nathalia Q. Ascenção, Luis C. S. Afonso, Danilo Colombo et al.

The task of learning to rank has been widely studied by the machine learning community, mainly due to its use and great importance in information retrieval, data mining, and natural language processing. Therefore, ranking accurately and learning to rank are crucial tasks. Context-Based Information Retrieval systems have been of great importance to reduce the effort of finding relevant data. Such systems have evolved by using machine learning techniques to improve their results, but they are mainly dependent on user feedback. Although information retrieval has been addressed in different works along with classifiers based on Optimum-Path Forest (OPF), these have so far not been applied to the learning to rank task. Therefore, the main contribution of this work is to evaluate classifiers based on Optimum-Path Forest, in such a context. Experiments were performed considering the image retrieval and ranking scenarios, and the performance of OPF-based approaches was compared to the well-known SVM-Rank pairwise technique and a baseline based on distance calculation. The experiments showed competitive results concerning precision and outperformed traditional techniques in terms of computational load.

Luis A. de Souza, Luis C. S. Afonso, Alanna Ebigbo et al.

In this work, we introduce the unsupervised Optimum-Path Forest (OPF) classifier for learning visual dictionaries in the context of Barrett's esophagus (BE) and automatic adenocarcinoma diagnosis. The proposed approach was validated in two datasets (MICCAI 2015 and Augsburg) using three different feature extractors (SIFT, SURF, and the not yet applied to the BE context A-KAZE), as well as five supervised classifiers, including two variants of the OPF, Support Vector Machines with Radial Basis Function and Linear kernels, and a Bayesian classifier. Concerning MICCAI 2015 dataset, the best results were obtained using unsupervised OPF for dictionary generation using supervised OPF for classification purposes and using SURF feature extractor with accuracy nearly to 78% for distinguishing BE patients from adenocarcinoma ones. Regarding the Augsburg dataset, the most accurate results were also obtained using both OPF classifiers but with A-KAZE as the feature extractor with accuracy close to 73%. The combination of feature extraction and bag-of-visual-words techniques showed results that outperformed others obtained recently in the literature, as well as we highlight new advances in the related research area. Reinforcing the significance of this work, to the best of our knowledge, this is the first one that aimed at addressing computer-aided BE identification using bag-of-visual-words and OPF classifiers, being this application of unsupervised technique in the BE feature calculation the major contribution of this work. It is also proposed a new BE and adenocarcinoma description using the A-KAZE features, not yet applied in the literature.

Mateus Roder, Gustavo H. de Rosa, Victor Hugo C. de Albuquerque et al.

Deep learning architectures have been widely fostered throughout the last years, being used in a wide range of applications, such as object recognition, image reconstruction, and signal processing. Nevertheless, such models suffer from a common problem known as overfitting, which limits the network from predicting unseen data effectively. Regularization approaches arise in an attempt to address such a shortcoming. Among them, one can refer to the well-known Dropout, which tackles the problem by randomly shutting down a set of neurons and their connections according to a certain probability. Therefore, this approach does not consider any additional knowledge to decide which units should be disconnected. In this paper, we propose an energy-based Dropout (E-Dropout) that makes conscious decisions whether a neuron should be dropped or not. Specifically, we design this regularization method by correlating neurons and the model's energy as an importance level for further applying it to energy-based models, such as Restricted Boltzmann Machines (RBMs). The experimental results over several benchmark datasets revealed the proposed approach's suitability compared to the traditional Dropout and the standard RBMs.

Leandro Aparecido Passos, Danilo Samuel Jodas, Luiz C. F. Ribeiro et al.

Breast cancer is among the most deadly diseases, distressing mostly women worldwide. Although traditional methods for detection have presented themselves as valid for the task, they still commonly present low accuracies and demand considerable time and effort from professionals. Therefore, a computer-aided diagnosis (CAD) system capable of providing early detection becomes hugely desirable. In the last decade, machine learning-based techniques have been of paramount importance in this context, since they are capable of extracting essential information from data and reasoning about it. However, such approaches still suffer from imbalanced data, specifically on medical issues, where the number of healthy people samples is, in general, considerably higher than the number of patients. Therefore this paper proposes the $\text{O}^2$PF, a data oversampling method based on the unsupervised Optimum-Path Forest Algorithm. Experiments conducted over the full oversampling scenario state the robustness of the model, which is compared against three well-established oversampling methods considering three breast cancer and three general-purpose tasks for medical issues datasets.

Gustavo H. de Rosa, Mateus Roder, João P. Papa

Machine Learning has been applied in a wide range of tasks throughout the last years, ranging from image classification to autonomous driving and natural language processing. Restricted Boltzmann Machine (RBM) has received recent attention and relies on an energy-based structure to model data probability distributions. Notwithstanding, such a technique is susceptible to adversarial manipulation, i.e., slightly or profoundly modified data. An alternative to overcome the adversarial problem lies in the Generative Adversarial Networks (GAN), capable of modeling data distributions and generating adversarial data that resemble the original ones. Therefore, this work proposes to artificially generate RBMs using Adversarial Learning, where pre-trained weight matrices serve as the GAN inputs. Furthermore, it proposes to sample copious amounts of matrices and combine them into ensembles, alleviating the burden of training new models'. Experimental results demonstrate the suitability of the proposed approach under image reconstruction and image classification tasks, and describe how artificial-based ensembles are alternatives to pre-training vast amounts of RBMs.

Gustavo H. de Rosa, Douglas Rodrigues, João P. Papa

Optimization aims at selecting a feasible set of parameters in an attempt to solve a particular problem, being applied in a wide range of applications, such as operations research, machine learning fine-tuning, and control engineering, among others. Nevertheless, traditional iterative optimization methods use the evaluation of gradients and Hessians to find their solutions, not being practical due to their computational burden and when working with non-convex functions. Recent biological-inspired methods, known as meta-heuristics, have arisen in an attempt to fulfill these problems. Even though they do not guarantee to find optimal solutions, they usually find a suitable solution. In this paper, we proposed a Python-based meta-heuristic optimization framework denoted as Opytimizer. Several methods and classes are implemented to provide a user-friendly workspace among diverse meta-heuristics, ranging from evolutionary- to swarm-based techniques.