Lyndon Da Cruz

Theodoros Pissas, Claudio S. Ravasio, Lyndon Da Cruz et al.

This work considers supervised contrastive learning for semantic segmentation. We apply contrastive learning to enhance the discriminative power of the multi-scale features extracted by semantic segmentation networks. Our key methodological insight is to leverage samples from the feature spaces emanating from multiple stages of a model's encoder itself requiring neither data augmentation nor online memory banks to obtain a diverse set of samples. To allow for such an extension we introduce an efficient and effective sampling process, that enables applying contrastive losses over the encoder's features at multiple scales. Furthermore, by first mapping the encoder's multi-scale representations to a common feature space, we instantiate a novel form of supervised local-global constraint by introducing cross-scale contrastive learning linking high-resolution local features to low-resolution global features. Combined, our multi-scale and cross-scale contrastive losses boost performance of various models (DeepLabV3, HRNet, OCRNet, UPerNet) with both CNN and Transformer backbones, when evaluated on 4 diverse datasets from natural (Cityscapes, PascalContext, ADE20K) but also surgical (CaDIS) domains. Our code is available at https://github.com/RViMLab/MS_CS_ContrSeg. datasets from natural (Cityscapes, PascalContext, ADE20K) but also surgical (CaDIS) domains.

Anestis Mablekos-Alexiou, Lyndon da Cruz, Christos Bergeles

We present a kinematic and transmission-aware design framework for a serial spherical mechanism with an additional translational degree of freedom for microsurgery. The first contribution is an analytical workspace formulation that provides geometric insight into reachable motion and enables rapid selection of rotation axis orientations without numerical optimization. The second contribution is a dynamics-informed methodology for mechanisms driven by self-locking transmissions, supporting evaluation of torque requirements for a prescribed workspace geometry. The framework is accompanied by an open-source software package for friction identification and inverse dynamics analysis. Experiments on a purpose-built robotic tool for vitreoretinal surgery validate the predictive capability of the models and demonstrate their practical utility for engineering design.

Claudio Ravasio, Lyndon Da Cruz, Christos Bergeles

We present a robust theoretical framework for the characterisation and manipulation of optical flow, i.e 2D vector fields, in the context of their use in motion estimation algorithms and beyond. The definition of two frames of reference guides the mathematical derivation of flow field application, inversion, evaluation, and composition operations. This structured approach is then used as the foundation for an implementation in Python 3, with the fully differentiable PyTorch version oflibpytorch supporting back-propagation as required for deep learning. We verify the flow composition method empirically and provide a working example for its application to optical flow ground truth in synthetic training data creation. All code is publicly available.

Theodoros Pissas, Claudio Ravasio, Lyndon Da Cruz et al.

Our work proposes neural network design choices that set the state-of-the-art on a challenging public benchmark on cataract surgery, CaDIS. Our methodology achieves strong performance across three semantic segmentation tasks with increasingly granular surgical tool class sets by effectively handling class imbalance, an inherent challenge in any surgical video. We consider and evaluate two conceptually simple data oversampling methods as well as different loss functions. We show significant performance gains across network architectures and tasks especially on the rarest tool classes, thereby presenting an approach for achieving high performance when imbalanced granular datasets are considered. Our code and trained models are available at https://github.com/RViMLab/MICCAI2021_Cataract_semantic_segmentation and qualitative results on unseen surgical video can be found at https://youtu.be/twVIPUj1WZM.

Imanol Luengo, Maria Grammatikopoulou, Rahim Mohammadi et al.

Surgical scene segmentation is essential for anatomy and instrument localization which can be further used to assess tissue-instrument interactions during a surgical procedure. In 2017, the Challenge on Automatic Tool Annotation for cataRACT Surgery (CATARACTS) released 50 cataract surgery videos accompanied by instrument usage annotations. These annotations included frame-level instrument presence information. In 2020, we released pixel-wise semantic annotations for anatomy and instruments for 4670 images sampled from 25 videos of the CATARACTS training set. The 2020 CATARACTS Semantic Segmentation Challenge, which was a sub-challenge of the 2020 MICCAI Endoscopic Vision (EndoVis) Challenge, presented three sub-tasks to assess participating solutions on anatomical structure and instrument segmentation. Their performance was assessed on a hidden test set of 531 images from 10 videos of the CATARACTS test set.