Jonathan P. Epperlein

Jonathan P. Epperlein, Sergiy Zhuk

With a video data source, such as multispectral video acquired during administration of fluorescent tracers, extraction of time-resolved data typically requires the compensation of motion. While this can be done manually, which is arduous, or using off-the-shelf object tracking software, which often yields unsatisfactory performance, we present an algorithm which is simple and performant. Most importantly, we provide an open-source implementation, with an easy-to-use interface for researchers not inclined to write their own code, as well as Python modules that can be used programmatically.

Ambrish Rawat, Giulio Zizzo, Swanand Kadhe et al.

In this work, we devise robust and efficient learning protocols for orchestrating a Federated Learning (FL) process for the Federated Tumor Segmentation Challenge (FeTS 2022). Enabling FL for FeTS setup is challenging mainly due to data heterogeneity among collaborators and communication cost of training. To tackle these challenges, we propose Robust Learning Protocol (RoLePRO) which is a combination of server-side adaptive optimisation (e.g., server-side Adam) and judicious parameter (weights) aggregation schemes (e.g., adaptive weighted aggregation). RoLePRO takes a two-phase approach, where the first phase consists of vanilla Federated Averaging, while the second phase consists of a judicious aggregation scheme that uses a sophisticated reweighting, all in the presence of an adaptive optimisation algorithm at the server. We draw insights from extensive experimentation to tune learning rates for the two phases.

Jonathan P. Epperlein, Roman Overko, Sergiy Zhuk et al.

Reinforcement learning (RL) algorithms aim to learn optimal decisions in unknown environments through experience of taking actions and observing the rewards gained. In some cases, the environment is not influenced by the actions of the RL agent, in which case the problem can be modeled as a contextual multi-armed bandit and lightweight myopic algorithms can be employed. On the other hand, when the RL agent's actions affect the environment, the problem must be modeled as a Markov decision process and more complex RL algorithms are required which take the future effects of actions into account. Moreover, in practice, it is often unknown from the outset whether or not the agent's actions will impact the environment and it is therefore not possible to determine which RL algorithm is most fitting. In this work, we propose to avoid this difficult decision entirely and incorporate a choice mechanism into our RL framework. Rather than assuming a specific problem structure, we use a probabilistic structure estimation procedure based on a likelihood-ratio (LR) test to make a more informed selection of learning algorithm. We derive a sufficient condition under which myopic policies are optimal, present an LR test for this condition, and derive a bound on the regret of our framework. We provide examples of real-world scenarios where our framework is needed and provide extensive simulations to validate our approach.

Sergiy Zhuk, Jonathan P. Epperlein, Rahul Nair et al.

Intra-operative identification of malignant versus benign or healthy tissue is a major challenge in fluorescence guided cancer surgery. We propose a perfusion quantification method for computer-aided interpretation of subtle differences in dynamic perfusion patterns which can be used to distinguish between normal tissue and benign or malignant tumors intra-operatively in real-time by using multispectral endoscopic videos. The method exploits the fact that vasculature arising from cancer angiogenesis gives tumors differing perfusion patterns from the surrounding tissue, and defines a signature of tumor which could be used to differentiate tumors from normal tissues. Experimental evaluation of our method on a cohort of colorectal cancer surgery endoscopic videos suggests that the proposed tumor signature is able to successfully discriminate between healthy, cancerous and benign tissue with 95% accuracy.

Jonathan P. Epperlein, Julien Monteil, Mingming Liu et al.

We present here a general framework and a specific algorithm for predicting the destination, route, or more generally a pattern, of an ongoing journey, building on the recent work of [Y. Lassoued, J. Monteil, Y. Gu, G. Russo, R. Shorten, and M. Mevissen, "Hidden Markov model for route and destination prediction," in IEEE International Conference on Intelligent Transportation Systems, 2017]. In the presented framework, known journey patterns are modelled as stochastic processes, emitting the road segments visited during the journey, and the ongoing journey is predicted by updating the posterior probability of each journey pattern given the road segments visited so far. In this contribution, we use Markov chains as models for the journey patterns, and consider the prediction as final, once one of the posterior probabilities crosses a predefined threshold. Despite the simplicity of both, examples run on a synthetic dataset demonstrate high accuracy of the made predictions.