Guillem Pascual

Guillem Pascual, Pablo Laiz, Albert García et al.

State-of-the-art machine learning models, and especially deep learning ones, are significantly data-hungry; they require vast amounts of manually labeled samples to function correctly. However, in most medical imaging fields, obtaining said data can be challenging. Not only the volume of data is a problem, but also the imbalances within its classes; it is common to have many more images of healthy patients than of those with pathology. Computer-aided diagnostic systems suffer from these issues, usually over-designing their models to perform accurately. This work proposes using self-supervised learning for wireless endoscopy videos by introducing a custom-tailored method that does not initially need labels or appropriate balance. We prove that using the inferred inherent structure learned by our method, extracted from the temporal axis, improves the detection rate on several domain-specific applications even under severe imbalance.

Gerard Calvo Bartra, Filip Lemic, Guillem Pascual et al.

Contemporary research advances in nanotechnology and material science are rooted in the emergence of nanodevices as a versatile tool that harmonizes sensing, computing, wireless communication, data storage, and energy harvesting. These devices offer novel pathways for disease diagnostics, treatment, and monitoring within the bloodstreams. Ensuring precise localization of events of diagnostic interest, which underpins the concept of flow-guided in-body nanoscale localization, would provide an added diagnostic value to the detected events. Raw data generated by the nanodevices is pivotal for this localization and consist of an event detection indicator and the time elapsed since the last passage of a nanodevice through the heart. The energy constraints of the nanodevices lead to intermittent operation and unreliable communication, intrinsically affecting this data. This posits a need for comprehensively modelling the features of this data. These imperfections also have profound implications for the viability of existing flow-guided localization approaches, which are ill-prepared to address the intricacies of the environment. Our first contribution lies in an analytical model of raw data for flow-guided localization, dissecting how communication and energy capabilities influence the nanodevices' data output. This model acts as a vital bridge, reconciling idealized assumptions with practical challenges of flow-guided localization. Toward addressing these practical challenges, we also present an integration of Graph Neural Networks (GNNs) into the flow-guided localization paradigm. GNNs excel in capturing complex dynamic interactions inherent to the localization of events sensed by the nanodevices. Our results highlight the potential of GNNs not only to enhance localization accuracy but also extend coverage to encompass the entire bloodstream.

Guillem Pascual, Filip Lemic, Carmen Delgado et al.

Advancements in nanotechnology and material science are paving the way toward nanoscale devices that combine sensing, computing, data and energy storage, and wireless communication. In precision medicine, these nanodevices show promise for disease diagnostics, treatment, and monitoring from within the patients' bloodstreams. Assigning the location of a sensed biological event with the event itself, which is the main proposition of flow-guided in-body nanoscale localization, would be immensely beneficial from the perspective of precision medicine. The nanoscale nature of the nanodevices and the challenging environment that the bloodstream represents, result in current flow-guided localization approaches being constrained in their communication and energy-related capabilities. The communication and energy constraints of the nanodevices result in different features of raw data for flow-guided localization, in turn affecting its performance. An analytical modeling of the effects of imperfect communication and constrained energy causing intermittent operation of the nanodevices on the raw data produced by the nanodevices would be beneficial. Hence, we propose an analytical model of raw data for flow-guided localization, where the raw data is modeled as a function of communication and energy-related capabilities of the nanodevice. We evaluate the model by comparing its output with the one obtained through the utilization of a simulator for objective evaluation of flow-guided localization, featuring comparably higher level of realism. Our results across a number of scenarios and heterogeneous performance metrics indicate high similarity between the model and simulator-generated raw datasets.

Guillem Pascual, Sonia Martínez

This paper proposes a new notion of distributional Input-to-State Stability (dISS) for dynamic systems evolving in probability spaces over a domain. Unlike other norm-based ISS concepts, we rely on the Wasserstein metric, which captures more precisely the effects of the disturbances on atomic and non-atomic measures. We show how dISS unifies both ISS and Noise to State Stability (NSS) over compact domains for particle dynamics, while extending the classical notions to sets of probability distributions. We then apply the dISS framework to study the robustness of various Wasserstein gradient flows with respect to perturbations. In particular, we establish dISS for gradient flows defined by a class of $l$-smooth functionals subject to bounded disturbances, such as those induced by entropy in optimal transport. Further, we study the dISS robustness of the large-scale algorithms when using Kernel and sample-based approximations. This results into a characterization of the error incurred when using a finite number of agents, which can guide the selection of the swarm size to achieve a mean-field objective with prescribed accuracy and stability guarantees.

Guillem Pascual, Santi Seguí, Jordi Vitrià

The production of thematic maps depicting land cover is one of the most common applications of remote sensing. To this end, several semantic segmentation approaches, based on deep learning, have been proposed in the literature, but land cover segmentation is still considered an open problem due to some specific problems related to remote sensing imaging. In this paper we propose a novel approach to deal with the problem of modelling multiscale contexts surrounding pixels of different land cover categories. The approach leverages the computation of a heteroscedastic measure of uncertainty when classifying individual pixels in an image. This classification uncertainty measure is used to define a set of memory gates between layers that allow a principled method to select the optimal decision for each pixel.

Santi Seguí, Michal Drozdzal, Guillem Pascual et al.

The interpretation and analysis of the wireless capsule endoscopy recording is a complex task which requires sophisticated computer aided decision (CAD) systems in order to help physicians with the video screening and, finally, with the diagnosis. Most of the CAD systems in the capsule endoscopy share a common system design, but use very different image and video representations. As a result, each time a new clinical application of WCE appears, new CAD system has to be designed from scratch. This characteristic makes the design of new CAD systems a very time consuming. Therefore, in this paper we introduce a system for small intestine motility characterization, based on Deep Convolutional Neural Networks, which avoids the laborious step of designing specific features for individual motility events. Experimental results show the superiority of the learned features over alternative classifiers constructed by using state of the art hand-crafted features. In particular, it reaches a mean classification accuracy of 96% for six intestinal motility events, outperforming the other classifiers by a large margin (a 14% relative performance increase).