João E. Batista

João Eduardo Batista

Feature engineering is mandatory in the machine learning pipeline to obtain robust models. While evolutionary computation is well-known for its great results both in feature selection and feature construction, its methods are computationally expensive due to the large number of evaluations required to induce the final model. Part of the reason why these algorithms require a large number of evaluations is their lack of domain-specific knowledge, resulting in a lot of random guessing during evolution. In this work, we propose using Large Language Models (LLMs) as an initial feature construction step to add knowledge to the dataset. By doing so, our results show that the evolution can converge faster, saving us computational resources. The proposed approach only provides the names of the features in the dataset and the target objective to the LLM, making it usable even when working with datasets containing private data. While consistent improvements to test performance were only observed for one-third of the datasets (CSS, PM, and IM10), possibly due to problems being easily explored by LLMs, this approach only decreased the model performance in 1/77 test cases. Additionally, this work introduces the M6GP feature engineering algorithm to symbolic regression, showing it can improve the results of the random forest regressor and produce competitive results with its predecessor, M3GP.

João Eduardo Batista, Emil Vatai, Mohamed Wahib

Large Language Models (LLMs) are increasingly applied in various science domains, yet their broader adoption remains constrained by a critical challenge: the lack of trustworthy, verifiable outputs. Current LLMs often generate answers without reliable source attribution, or worse, with incorrect attributions, posing a barrier to their use in scientific and high-stakes settings, where traceability and accountability are paramount. To be reliable, attribution systems require high accuracy for short-length attribution on retrieved data, i.e., attribution to a sentence within a document rather than the entire document. We propose SAFE, a Sentence-level A ttribution FramEwork for Retrieve-Augmented Generation (RAG) systems that attributes generated sentences during generation. This allows users to verify sentences as they read them and correct the model when the attribution indicates the generated text is not grounded in the documents, increasing the safety of LLM systems. This framework consists of two steps: predicting the required number of references for a sentence, and attributing the sentence. Our approach achieved 95% accuracy in the first step, which translated to 2.1\~6.0% improvements in the accuracy (normalized for maximum possible accuracy) of all attribution algorithms in our clean dataset, when compared to their top-1 accuracy. We also applied SAFE in real-world scenarios with documents containing hundreds to thousands of sentences. In these settings, SAFE reliably attributed sentences to their source documents, demonstrating that the method generalizes beyond controlled benchmarks. The SAFE framework and the training dataset are publicly available on GitHub.

Nuno M. Rodrigues, João E. Batista, Leonardo Trujillo et al.

We present a novel approach for time series classification where we represent time series data as plot images and feed them to a simple CNN, outperforming several state-of-the-art methods. We propose a simple and highly replicable way of plotting the time series, and feed these images as input to a non-optimized shallow CNN, without any normalization or residual connections. These representations are no more than default line plots using the time series data, where the only pre-processing applied is to reduce the number of white pixels in the image. We compare our method with different state-of-the-art methods specialized in time series classification on two real-world non public datasets, as well as 98 datasets of the UCR dataset collection. The results show that our approach is very promising, achieving the best results on both real-world datasets and matching / beating the best state-of-the-art methods in six UCR datasets. We argue that, if a simple naive design like ours can obtain such good results, it is worth further exploring the capabilities of using image representation of time series data, along with more powerful CNNs, for classification and other related tasks.

João E. Batista, Sara Silva

One problem found when working with satellite images is the radiometric variations across the image and different images. Intending to improve remote sensing models for the classification of burnt areas, we set two objectives. The first is to understand the relationship between feature spaces and the predictive ability of the models, allowing us to explain the differences between learning and generalization when training and testing in different datasets. We find that training on datasets built from more than one image provides models that generalize better. These results are explained by visualizing the dispersion of values on the feature space. The second objective is to evolve hyper-features that improve the performance of different classifiers on a variety of test sets. We find the hyper-features to be beneficial, and obtain the best models with XGBoost, even if the hyper-features are optimized for a different method.

Nuno M. Rodrigues, João E. Batista, Sara Silva

Ensemble learning is a powerful paradigm that has been usedin the top state-of-the-art machine learning methods like Random Forestsand XGBoost. Inspired by the success of such methods, we have devel-oped a new Genetic Programming method called Ensemble GP. The evo-lutionary cycle of Ensemble GP follows the same steps as other GeneticProgramming systems, but with differences in the population structure,fitness evaluation and genetic operators. We have tested this method oneight binary classification problems, achieving results significantly betterthan standard GP, with much smaller models. Although other methodslike M3GP and XGBoost were the best overall, Ensemble GP was able toachieve exceptionally good generalization results on a particularly hardproblem where none of the other methods was able to succeed.