Serop Baghdadlian

Sami Ede, Serop Baghdadlian, Leander Weber et al.

The ability to continuously process and retain new information like we do naturally as humans is a feat that is highly sought after when training neural networks. Unfortunately, the traditional optimization algorithms often require large amounts of data available during training time and updates wrt. new data are difficult after the training process has been completed. In fact, when new data or tasks arise, previous progress may be lost as neural networks are prone to catastrophic forgetting. Catastrophic forgetting describes the phenomenon when a neural network completely forgets previous knowledge when given new information. We propose a novel training algorithm called training by explaining in which we leverage Layer-wise Relevance Propagation in order to retain the information a neural network has already learned in previous tasks when training on new data. The method is evaluated on a range of benchmark datasets as well as more complex data. Our method not only successfully retains the knowledge of old tasks within the neural networks but does so more resource-efficiently than other state-of-the-art solutions.

Frauke Wilm, Michaela Benz, Volker Bruns et al.

Automatic outlining of different tissue types in digitized histological specimen provides a basis for follow-up analyses and can potentially guide subsequent medical decisions. The immense size of whole-slide-images (WSI), however, poses a challenge in terms of computation time. In this regard, the analysis of non-overlapping patches outperforms pixelwise segmentation approaches, but still leaves room for optimization. Furthermore, the division into patches, regardless of the biological structures they contain, is a drawback due to the loss of local dependencies. We propose to subdivide the WSI into coherent regions prior to classification by grouping visually similar adjacent pixels into superpixels. Afterwards, only a random subset of patches per superpixel is classified and patch labels are combined into a superpixel label. We propose a metric for identifying superpixels with an uncertain classification and evaluate two medical applications, namely tumor area and invasive margin estimation and tumor composition analysis. The algorithm has been developed on 159 hand-annotated WSIs of colon resections and its performance is compared to an analysis without prior segmentation. The algorithm shows an average speed-up of 41% and an increase in accuracy from 93.8% to 95.7%. By assigning a rejection label to uncertain superpixels, we further increase the accuracy by 0.4%. Whilst tumor area estimation shows high concordance to the annotated area, the analysis of tumor composition highlights limitations of our approach. By combining superpixel segmentation and patch classification, we designed a fast and accurate framework for whole-slide cartography that is AI-model agnostic and provides the basis for various medical endpoints.