Christopher Chute

Elena Casiraghi, Rachel Wong, Margaret Hall et al.

Healthcare datasets obtained from Electronic Health Records have proven to be extremely useful to assess associations between patients' predictors and outcomes of interest. However, these datasets often suffer from missing values in a high proportion of cases and the simple removal of these cases may introduce severe bias. For these reasons, several multiple imputation algorithms have been proposed to attempt to recover the missing information. Each algorithm presents strengths and weaknesses, and there is currently no consensus on which multiple imputation algorithms works best in a given scenario. Furthermore, the selection of each algorithm parameters and data-related modelling choices are also both crucial and challenging. In this paper, we propose a novel framework to numerically evaluate strategies for handling missing data in the context of statistical analysis, with a particular focus on multiple imputation techniques. We demonstrate the feasibility of our approach on a large cohort of type-2 diabetes patients provided by the National COVID Cohort Collaborative (N3C) Enclave, where we explored the influence of various patient characteristics on outcomes related to COVID-19. Our analysis included classic multiple imputation techniques as well as simple complete-case Inverse Probability Weighted models. The experiments presented here show that our approach could effectively highlight the most valid and performant missing-data handling strategy for our case study. Moreover, our methodology allowed us to gain an understanding of the behavior of the different models and of how it changed as we modified their parameters. Our method is general and can be applied to different research fields and on datasets containing heterogeneous types.

Aditya Grover, Christopher Chute, Rui Shu et al.

Given datasets from multiple domains, a key challenge is to efficiently exploit these data sources for modeling a target domain. Variants of this problem have been studied in many contexts, such as cross-domain translation and domain adaptation. We propose AlignFlow, a generative modeling framework that models each domain via a normalizing flow. The use of normalizing flows allows for a) flexibility in specifying learning objectives via adversarial training, maximum likelihood estimation, or a hybrid of the two methods; and b) learning and exact inference of a shared representation in the latent space of the generative model. We derive a uniform set of conditions under which AlignFlow is marginally-consistent for the different learning objectives. Furthermore, we show that AlignFlow guarantees exact cycle consistency in mapping datapoints from a source domain to target and back to the source domain. Empirically, AlignFlow outperforms relevant baselines on image-to-image translation and unsupervised domain adaptation and can be used to simultaneously interpolate across the various domains using the learned representation.