Wenjun Zhao

2papers

2 Papers

LGJun 2, 2022Code
A memory-efficient neural ODE framework based on high-level adjoint differentiation

Hong Zhang, Wenjun Zhao

Neural ordinary differential equations (neural ODEs) have emerged as a novel network architecture that bridges dynamical systems and deep learning. However, the gradient obtained with the continuous adjoint method in the vanilla neural ODE is not reverse-accurate. Other approaches suffer either from an excessive memory requirement due to deep computational graphs or from limited choices for the time integration scheme, hampering their application to large-scale complex dynamical systems. To achieve accurate gradients without compromising memory efficiency and flexibility, we present a new neural ODE framework, PNODE, based on high-level discrete adjoint algorithmic differentiation. By leveraging discrete adjoint time integrators and advanced checkpointing strategies tailored for these integrators, PNODE can provide a balance between memory and computational costs, while computing the gradients consistently and accurately. We provide an open-source implementation based on PyTorch and PETSc, one of the most commonly used portable, scalable scientific computing libraries. We demonstrate the performance through extensive numerical experiments on image classification and continuous normalizing flow problems. We show that PNODE achieves the highest memory efficiency when compared with other reverse-accurate methods. On the image classification problems, PNODE is up to two times faster than the vanilla neural ODE and up to 2.3 times faster than the best existing reverse-accurate method. We also show that PNODE enables the use of the implicit time integration methods that are needed for stiff dynamical systems.

IVJun 14, 2024
A Deep Learning System for Rapid and Accurate Warning of Acute Aortic Syndrome on Non-contrast CT in China

Yujian Hu, Yilang Xiang, Yan-Jie Zhou et al.

The accurate and timely diagnosis of acute aortic syndromes (AAS) in patients presenting with acute chest pain remains a clinical challenge. Aortic CT angiography (CTA) is the imaging protocol of choice in patients with suspected AAS. However, due to economic and workflow constraints in China, the majority of suspected patients initially undergo non-contrast CT as the initial imaging testing, and CTA is reserved for those at higher risk. In this work, we present an artificial intelligence-based warning system, iAorta, using non-contrast CT for AAS identification in China, which demonstrates remarkably high accuracy and provides clinicians with interpretable warnings. iAorta was evaluated through a comprehensive step-wise study. In the multi-center retrospective study (n = 20,750), iAorta achieved a mean area under the receiver operating curve (AUC) of 0.958 (95% CI 0.950-0.967). In the large-scale real-world study (n = 137,525), iAorta demonstrated consistently high performance across various non-contrast CT protocols, achieving a sensitivity of 0.913-0.942 and a specificity of 0.991-0.993. In the prospective comparative study (n = 13,846), iAorta demonstrated the capability to significantly shorten the time to correct diagnostic pathway. For the prospective pilot deployment that we conducted, iAorta correctly identified 21 out of 22 patients with AAS among 15,584 consecutive patients presenting with acute chest pain and under non-contrast CT protocol in the emergency department (ED) and enabled the average diagnostic time of these 21 AAS positive patients to be 102.1 (75-133) mins. Last, the iAorta can help avoid delayed or missed diagnosis of AAS in settings where non-contrast CT remains the unavoidable the initial or only imaging test in resource-constrained regions and in patients who cannot or did not receive intravenous contrast.