Masoud Rouhizadeh

Ali Zolnour, Hossein Azadmaleki, Yasaman Haghbin et al.

Alzheimer's disease and related dementias(ADRD) affect nearly five million older adults in the United States, yet more than half remain undiagnosed. Speech-based natural language processing(NLP) offers a scalable approach for detecting early cognitive decline through subtle linguistic markers that may precede clinical diagnosis. This study develops and evaluates a speech-based screening pipeline integrating transformer embeddings with handcrafted linguistic features, synthetic augmentation using large language models(LLMs), and benchmarking of unimodal and multimodal classifiers. External validation assessed generalizability to a MCI-only cohort. Transcripts were drawn from the ADReSSo 2021 benchmark dataset(n=237, Pitt Corpus) and the DementiaBank Delaware corpus(n=205, MCI vs. controls). Ten transformer models were tested under three fine-tuning strategies. A late-fusion model combined embeddings from the top transformer with 110 linguistic features. Five LLMs(LLaMA8B/70B, MedAlpaca7B, Ministral8B,GPT-4o) generated label-conditioned synthetic speech for augmentation, and three multimodal LLMs(GPT-4o,Qwen-Omni,Phi-4) were evaluated in zero-shot and fine-tuned modes. On ADReSSo, the fusion model achieved F1=83.3(AUC=89.5), outperforming transformer-only and linguistic baselines. MedAlpaca7B augmentation(2x) improved F1=85.7, though larger scales reduced gains. Fine-tuning boosted unimodal LLMs(MedAlpaca7B F1=47.7=>78.7), while multimodal models performed lower (Phi-4=71.6;GPT-4o=67.6). On Delaware, the fusion plus 1x MedAlpaca7B model achieved F1=72.8(AUC=69.6). Integrating transformer and linguistic features enhances ADRD detection. LLM-based augmentation improves data efficiency but yields diminishing returns, while current multimodal models remain limited. Validation on an independent MCI cohort supports the pipeline's potential for scalable, clinically relevant early screening.

Yuxin Zhu, Sahithi Lakamana, Masoud Rouhizadeh et al.

Treatment-resistant depression (TRD) is a severe form of major depressive disorder in which patients do not achieve remission despite multiple adequate treatment trials. Evidence across pharmacologic options for TRD remains limited, and trials often do not fully capture patient-reported tolerability. Large-scale online peer-support narratives therefore offer a complementary lens on how patients describe and evaluate medications in real-world use. In this study, we curated a corpus of 5,059 Reddit posts explicitly referencing TRD from 3,480 subscribers across 28 mental health-related subreddits from 2010 to 2025. Of these, 3,839 posts mentioned at least one medication, yielding 23,399 mentions of 81 generic-name medications after lexicon-based normalization of brand names, misspellings, and colloquialisms. We developed an aspect-based sentiment classifier by fine-tuning DeBERTa-v3 on the SMM4H 2023 therapy-sentiment Twitter corpus with large language model based data augmentation, achieving a micro-F1 score of 0.800 on the shared-task test set. Applying this classifier to Reddit, we quantified sentiment toward individual medications across three categories: positive, neutral, and negative, and tracked patterns by drug, subscriber, subreddit, and year. Overall, 72.1% of medication mentions were neutral, 14.8% negative, and 13.1% positive. Conventional antidepressants, especially SSRIs and SNRIs, showed consistently higher negative than positive proportions, whereas ketamine and esketamine showed comparatively more favorable sentiment profiles. These findings show that normalized medication extraction combined with aspect-based sentiment analysis can help characterize patient-perceived treatment experiences in TRD-related Reddit discourse, complementing clinical evidence with large-scale patient-generated perspectives.

Sijia Liu, Andrew Wen, Liwei Wang et al.

While we pay attention to the latest advances in clinical natural language processing (NLP), we can notice some resistance in the clinical and translational research community to adopt NLP models due to limited transparency, interpretability, and usability. In this study, we proposed an open natural language processing development framework. We evaluated it through the implementation of NLP algorithms for the National COVID Cohort Collaborative (N3C). Based on the interests in information extraction from COVID-19 related clinical notes, our work includes 1) an open data annotation process using COVID-19 signs and symptoms as the use case, 2) a community-driven ruleset composing platform, and 3) a synthetic text data generation workflow to generate texts for information extraction tasks without involving human subjects. The corpora were derived from texts from three different institutions (Mayo Clinic, University of Kentucky, University of Minnesota). The gold standard annotations were tested with a single institution's (Mayo) ruleset. This resulted in performances of 0.876, 0.706, and 0.694 in F-scores for Mayo, Minnesota, and Kentucky test datasets, respectively. The study as a consortium effort of the N3C NLP subgroup demonstrates the feasibility of creating a federated NLP algorithm development and benchmarking platform to enhance multi-institution clinical NLP study and adoption. Although we use COVID-19 as a use case in this effort, our framework is general enough to be applied to other domains of interest in clinical NLP.

Rachel Dorn, Alicia L. Nobles, Masoud Rouhizadeh et al.

The identification and removal/replacement of protected information from social media data is an understudied problem, despite being desirable from an ethical and legal perspective. This paper identifies types of potentially directly identifiable information (inspired by protected health information in clinical texts) contained in tweets that may be readily removed using off-the-shelf algorithms, introduces an English dataset of tweets annotated for identifiable information, and compiles these off-the-shelf algorithms into a tool (Nightjar) to evaluate the feasibility of using Nightjar to remove directly identifiable information from the tweets. Nightjar as well as the annotated data can be retrieved from https://bitbucket.org/mdredze/nightjar.

Jingqi Wang, Noor Abu-el-rub, Josh Gray et al.

The COVID-19 pandemic swept across the world rapidly, infecting millions of people. An efficient tool that can accurately recognize important clinical concepts of COVID-19 from free text in electronic health records (EHRs) will be valuable to accelerate COVID-19 clinical research. To this end, this study aims at adapting the existing CLAMP natural language processing tool to quickly build COVID-19 SignSym, which can extract COVID-19 signs/symptoms and their 8 attributes (body location, severity, temporal expression, subject, condition, uncertainty, negation, and course) from clinical text. The extracted information is also mapped to standard concepts in the Observational Medical Outcomes Partnership common data model. A hybrid approach of combining deep learning-based models, curated lexicons, and pattern-based rules was applied to quickly build the COVID-19 SignSym from CLAMP, with optimized performance. Our extensive evaluation using 3 external sites with clinical notes of COVID-19 patients, as well as the online medical dialogues of COVID-19, shows COVID-19 Sign-Sym can achieve high performance across data sources. The workflow used for this study can be generalized to other use cases, where existing clinical natural language processing tools need to be customized for specific information needs within a short time. COVID-19 SignSym is freely accessible to the research community as a downloadable package (https://clamp.uth.edu/covid/nlp.php) and has been used by 16 healthcare organizations to support clinical research of COVID-19.

Andriy Mulyar, Elliot Schumacher, Masoud Rouhizadeh et al.

Clinical notes contain an extensive record of a patient's health status, such as smoking status or the presence of heart conditions. However, this detail is not replicated within the structured data of electronic health systems. Phenotyping, the extraction of patient conditions from free clinical text, is a critical task which supports avariety of downstream applications such as decision support and secondary use of medical records. Previous work has resulted in systems which are high performing but require hand engineering, often of rules. Recent work in pretrained contextualized language models have enabled advances in representing text for a variety of tasks. We therefore explore several architectures for modeling pheno-typing that rely solely on BERT representations of the clinical note, removing the need for manual engineering. We find these architectures are competitive with or outperform existing state of the art methods on two phenotyping tasks.

Joao Sedoc, Derry Wijaya, Masoud Rouhizadeh et al.

Hand-built verb clusters such as the widely used Levin classes (Levin, 1993) have proved useful, but have limited coverage. Verb classes automatically induced from corpus data such as those from VerbKB (Wijaya, 2016), on the other hand, can give clusters with much larger coverage, and can be adapted to specific corpora such as Twitter. We present a method for clustering the outputs of VerbKB: verbs with their multiple argument types, e.g. "marry(person, person)", "feel(person, emotion)." We make use of a novel low-dimensional embedding of verbs and their arguments to produce high quality clusters in which the same verb can be in different clusters depending on its argument type. The resulting verb clusters do a better job than hand-built clusters of predicting sarcasm, sentiment, and locus of control in tweets.