LGApr 4, 2023Code
FakET: Simulating Cryo-Electron Tomograms with Neural Style TransferPavol Harar, Lukas Herrmann, Philipp Grohs et al.
In cryo-electron microscopy, accurate particle localization and classification are imperative. Recent deep learning solutions, though successful, require extensive training data sets. The protracted generation time of physics-based models, often employed to produce these data sets, limits their broad applicability. We introduce FakET, a method based on Neural Style Transfer, capable of simulating the forward operator of any cryo transmission electron microscope. It can be used to adapt a synthetic training data set according to reference data producing high-quality simulated micrographs or tilt-series. To assess the quality of our generated data, we used it to train a state-of-the-art localization and classification architecture and compared its performance with a counterpart trained on benchmark data. Remarkably, our technique matches the performance, boosts data generation speed 750 times, uses 33 times less memory, and scales well to typical transmission electron microscope detector sizes. It leverages GPU acceleration and parallel processing. The source code is available at https://github.com/paloha/faket.
NAJul 11, 2022
Neural and spectral operator surrogates: unified construction and expression rate boundsLukas Herrmann, Christoph Schwab, Jakob Zech
Approximation rates are analyzed for deep surrogates of maps between infinite-dimensional function spaces, arising e.g. as data-to-solution maps of linear and nonlinear partial differential equations. Specifically, we study approximation rates for Deep Neural Operator and Generalized Polynomial Chaos (gpc) Operator surrogates for nonlinear, holomorphic maps between infinite-dimensional, separable Hilbert spaces. Operator in- and outputs from function spaces are assumed to be parametrized by stable, affine representation systems. Admissible representation systems comprise orthonormal bases, Riesz bases or suitable tight frames of the spaces under consideration. Algebraic expression rate bounds are established for both, deep neural and spectral operator surrogates acting in scales of separable Hilbert spaces containing domain and range of the map to be expressed, with finite Sobolev or Besov regularity. We illustrate the abstract concepts by expression rate bounds for the coefficient-to-solution map for a linear elliptic PDE on the torus.
PRNov 1, 2016
Numerical analysis of lognormal diffusions on the sphereLukas Herrmann, Annika Lang, Christoph Schwab
Numerical solutions of stationary diffusion equations on the unit sphere with isotropic lognormal diffusion coefficients are considered. Hölder regularity in $L^p$ sense for isotropic Gaussian random fields is obtained and related to the regularity of the driving lognormal coefficients. This yields regularity in $L^p$ sense of the solution to the diffusion problem in Sobolev spaces. Convergence rate estimates of multilevel Monte Carlo Finite and Spectral Element discretizations of these problems are then deduced. Specifically, a convergence analysis is provided with convergence rate estimates in terms of the number of Monte Carlo samples of the solution to the considered diffusion equation and in terms of the total number of degrees of freedom of the spatial discretization, and with bounds for the total work required by the algorithm in the case of Finite Element discretizations. The obtained convergence rates are solely in terms of the decay of the angular power spectrum of the (logarithm) of the diffusion coefficient. Numerical examples confirm the presented theory.
NAMar 9, 2021
Deep neural network approximation for high-dimensional parabolic Hamilton-Jacobi-Bellman equationsPhilipp Grohs, Lukas Herrmann
The approximation of solutions to second order Hamilton--Jacobi--Bellman (HJB) equations by deep neural networks is investigated. It is shown that for HJB equations that arise in the context of the optimal control of certain Markov processes the solution can be approximated by deep neural networks without incurring the curse of dimension. The dynamics is assumed to depend affinely on the controls and the cost depends quadratically on the controls. The admissible controls take values in a bounded set.
NAJul 10, 2020
Deep neural network approximation for high-dimensional elliptic PDEs with boundary conditionsPhilipp Grohs, Lukas Herrmann
In recent work it has been established that deep neural networks are capable of approximating solutions to a large class of parabolic partial differential equations without incurring the curse of dimension. However, all this work has been restricted to problems formulated on the whole Euclidean domain. On the other hand, most problems in engineering and the sciences are formulated on finite domains and subjected to boundary conditions. The present paper considers an important such model problem, namely the Poisson equation on a domain $D\subset \mathbb{R}^d$ subject to Dirichlet boundary conditions. It is shown that deep neural networks are capable of representing solutions of that problem without incurring the curse of dimension. The proofs are based on a probabilistic representation of the solution to the Poisson equation as well as a suitable sampling method.