Queenie Chan

Chaoxing Huang, Yurui Qian, Simon Chun Ho Yu et al.

$T_{1ρ}$ mapping is a promising quantitative MRI technique for the non-invasive assessment of tissue properties. Learning-based approaches can map $T_{1ρ}$ from a reduced number of $T_{1ρ}$ weighted images, but requires significant amounts of high quality training data. Moreover, existing methods do not provide the confidence level of the $T_{1ρ}$ estimation. To address these problems, we proposed a self-supervised learning neural network that learns a $T_{1ρ}$ mapping using the relaxation constraint in the learning process. Epistemic uncertainty and aleatoric uncertainty are modelled for the $T_{1ρ}$ quantification network to provide a Bayesian confidence estimation of the $T_{1ρ}$ mapping. The uncertainty estimation can also regularize the model to prevent it from learning imperfect data. We conducted experiments on $T_{1ρ}$ data collected from 52 patients with non-alcoholic fatty liver disease. The results showed that our method outperformed the existing methods for $T_{1ρ}$ quantification of the liver using as few as two $T_{1ρ}$-weighted images. Our uncertainty estimation provided a feasible way of modelling the confidence of the self-supervised learning based $T_{1ρ}$ estimation, which is consistent with the reality in liver $T_{1ρ}$ imaging.

Chaoxing Huang, Vincent Wai Sun Wong, Queenie Chan et al.

Objective: Quantitative $T_1ρ$ imaging has potential for assessment of biochemical alterations of liver pathologies. Deep learning methods have been employed to accelerate quantitative $T_1ρ$ imaging. To employ artificial intelligence-based quantitative imaging methods in complicated clinical environment, it is valuable to estimate the uncertainty of the predicated $T_1ρ$ values to provide the confidence level of the quantification results. The uncertainty should also be utilized to aid the post-hoc quantitative analysis and model learning tasks. Approach: To address this need, we propose a parametric map refinement approach for learning-based $T_1ρ$ mapping and train the model in a probabilistic way to model the uncertainty. We also propose to utilize the uncertainty map to spatially weight the training of an improved $T_1ρ$ mapping network to further improve the mapping performance and to remove pixels with unreliable $T_1ρ$ values in the region of interest. The framework was tested on a dataset of 51 patients with different liver fibrosis stages. Main results: Our results indicate that the learning-based map refinement method leads to a relative mapping error of less than 3% and provides uncertainty estimation simultaneously. The estimated uncertainty reflects the actual error level, and it can be used to further reduce relative $T_1ρ$ mapping error to 2.60% as well as removing unreliable pixels in the region of interest effectively. Significance: Our studies demonstrate the proposed approach has potential to provide a learning-based quantitative MRI system for trustworthy $T_1ρ$ mapping of the liver.

Chaoxing Huang, Ziqiang Yu, Zijian Gao et al.

Fatty acid can potentially serve as biomarker for evaluating metabolic disorder and inflammation condition, and quantifying the double bonds is the key for revealing fatty acid information. This study presents an assessment of a deep learning approach utilizing Deep Image Prior (DIP) for the quantification of double bonds and methylene-interrupted double bonds of triglyceride derived from chemical-shift encoded multi-echo gradient echo images, all achieved without the necessity for network training. The methodology implemented a cost function grounded in signal constraints to continually refine the neural network's parameters on a single slice of images through iterative processes. Validation procedures encompassed both phantom experiments and in-vivo scans. The outcomes evidenced a concordance between the quantified values and the established reference standards, notably exemplified by a Pearson correlation coefficient of 0.96 (p = 0.0005) derived from the phantom experiments. The results in water-oil phantom also demonstrate the quantification reliability of the DIP method under the condition of having a relatively low-fat signal. Furthermore, the in-vivo assessments showcased the method's competency by showcasing consistent quantification results that closely mirrored previously published findings concerning subcutaneous fat. In summary, the study underscores the potential of Deep Image Prior in enabling the quantification of double bonds and methylene-interrupted double bonds from chemical-shift encoded multi-echo magnetic resonance imaging (MRI) data, suggesting potential avenues for future research and clinical applications in the field.