TOJul 7, 2022
Uncertainty-Aware Self-supervised Neural Network for Liver $T_{1ρ}$ Mapping with Relaxation ConstraintChaoxing Huang, Yurui Qian, Simon Chun Ho Yu et al.
$T_{1ρ}$ mapping is a promising quantitative MRI technique for the non-invasive assessment of tissue properties. Learning-based approaches can map $T_{1ρ}$ from a reduced number of $T_{1ρ}$ weighted images, but requires significant amounts of high quality training data. Moreover, existing methods do not provide the confidence level of the $T_{1ρ}$ estimation. To address these problems, we proposed a self-supervised learning neural network that learns a $T_{1ρ}$ mapping using the relaxation constraint in the learning process. Epistemic uncertainty and aleatoric uncertainty are modelled for the $T_{1ρ}$ quantification network to provide a Bayesian confidence estimation of the $T_{1ρ}$ mapping. The uncertainty estimation can also regularize the model to prevent it from learning imperfect data. We conducted experiments on $T_{1ρ}$ data collected from 52 patients with non-alcoholic fatty liver disease. The results showed that our method outperformed the existing methods for $T_{1ρ}$ quantification of the liver using as few as two $T_{1ρ}$-weighted images. Our uncertainty estimation provided a feasible way of modelling the confidence of the self-supervised learning based $T_{1ρ}$ estimation, which is consistent with the reality in liver $T_{1ρ}$ imaging.
MED-PHJul 2, 2024
Chemical Shift Encoding based Double Bonds Quantification in Triglycerides using Deep Image PriorChaoxing Huang, Ziqiang Yu, Zijian Gao et al.
Fatty acid can potentially serve as biomarker for evaluating metabolic disorder and inflammation condition, and quantifying the double bonds is the key for revealing fatty acid information. This study presents an assessment of a deep learning approach utilizing Deep Image Prior (DIP) for the quantification of double bonds and methylene-interrupted double bonds of triglyceride derived from chemical-shift encoded multi-echo gradient echo images, all achieved without the necessity for network training. The methodology implemented a cost function grounded in signal constraints to continually refine the neural network's parameters on a single slice of images through iterative processes. Validation procedures encompassed both phantom experiments and in-vivo scans. The outcomes evidenced a concordance between the quantified values and the established reference standards, notably exemplified by a Pearson correlation coefficient of 0.96 (p = 0.0005) derived from the phantom experiments. The results in water-oil phantom also demonstrate the quantification reliability of the DIP method under the condition of having a relatively low-fat signal. Furthermore, the in-vivo assessments showcased the method's competency by showcasing consistent quantification results that closely mirrored previously published findings concerning subcutaneous fat. In summary, the study underscores the potential of Deep Image Prior in enabling the quantification of double bonds and methylene-interrupted double bonds from chemical-shift encoded multi-echo magnetic resonance imaging (MRI) data, suggesting potential avenues for future research and clinical applications in the field.
LGOct 31, 2016
Temporal Matrix Completion with Locally Linear Latent Factors for Medical ApplicationsFrodo Kin Sun Chan, Andy J Ma, Pong C Yuen et al.
Regular medical records are useful for medical practitioners to analyze and monitor patient health status especially for those with chronic disease, but such records are usually incomplete due to unpunctuality and absence of patients. In order to resolve the missing data problem over time, tensor-based model is suggested for missing data imputation in recent papers because this approach makes use of low rank tensor assumption for highly correlated data. However, when the time intervals between records are long, the data correlation is not high along temporal direction and such assumption is not valid. To address this problem, we propose to decompose a matrix with missing data into its latent factors. Then, the locally linear constraint is imposed on these factors for matrix completion in this paper. By using a publicly available dataset and two medical datasets collected from hospital, experimental results show that the proposed algorithm achieves the best performance by comparing with the existing methods.