Alexander Campbell

Alexander Campbell, Antonio Giuliano Zippo, Luca Passamonti et al.

Graph neural networks (GNNs) have demonstrated success in learning representations of brain graphs derived from functional magnetic resonance imaging (fMRI) data. However, existing GNN methods assume brain graphs are static over time and the graph adjacency matrix is known prior to model training. These assumptions contradict evidence that brain graphs are time-varying with a connectivity structure that depends on the choice of functional connectivity measure. Incorrectly representing fMRI data with noisy brain graphs can adversely affect GNN performance. To address this, we propose DynDepNet, a novel method for learning the optimal time-varying dependency structure of fMRI data induced by downstream prediction tasks. Experiments on real-world fMRI datasets, for the task of sex classification, demonstrate that DynDepNet achieves state-of-the-art results, outperforming the best baseline in terms of accuracy by approximately 8 and 6 percentage points, respectively. Furthermore, analysis of the learned dynamic graphs reveals prediction-related brain regions consistent with existing neuroscience literature.

Alexander Campbell, Simeon Spasov, Nicola Toschi et al.

Graphs are a natural representation of brain activity derived from functional magnetic imaging (fMRI) data. It is well known that clusters of anatomical brain regions, known as functional connectivity networks (FCNs), encode temporal relationships which can serve as useful biomarkers for understanding brain function and dysfunction. Previous works, however, ignore the temporal dynamics of the brain and focus on static graphs. In this paper, we propose a dynamic brain graph deep generative model (DBGDGM) which simultaneously clusters brain regions into temporally evolving communities and learns dynamic unsupervised node embeddings. Specifically, DBGDGM represents brain graph nodes as embeddings sampled from a distribution over communities that evolve over time. We parameterise this community distribution using neural networks that learn from subject and node embeddings as well as past community assignments. Experiments demonstrate DBGDGM outperforms baselines in graph generation, dynamic link prediction, and is comparable for graph classification. Finally, an analysis of the learnt community distributions reveals overlap with known FCNs reported in neuroscience literature.

James King, Ramon Viñas Torné, Alexander Campbell et al.

There have been several successful deep learning models that perform audio super-resolution. Many of these approaches involve using preprocessed feature extraction which requires a lot of domain-specific signal processing knowledge to implement. Convolutional Neural Networks (CNNs) improved upon this framework by automatically learning filters. An example of a convolutional approach is AudioUNet, which takes inspiration from novel methods of upsampling images. Our paper compares the pre-upsampling AudioUNet to a new generative model that upsamples the signal before using deep learning to transform it into a more believable signal. Based on the EDSR network for image super-resolution, the newly proposed model outperforms UNet with a 20% increase in log spectral distance and a mean opinion score of 4.06 compared to 3.82 for the two times upsampling case. AudioEDSR also has 87% fewer parameters than AudioUNet. How incorporating AudioUNet into a Wasserstein GAN (with gradient penalty) (WGAN-GP) structure can affect training is also explored. Finally the effects artifacting has on the current state of the art is analysed and solutions to this problem are proposed. The methods used in this paper have broad applications to telephony, audio recognition and audio generation tasks.

Lorena Qendro, Alexander Campbell, Pietro Liò et al.

Electroencephalography (EEG) is crucial for the monitoring and diagnosis of brain disorders. However, EEG signals suffer from perturbations caused by non-cerebral artifacts limiting their efficacy. Current artifact detection pipelines are resource-hungry and rely heavily on hand-crafted features. Moreover, these pipelines are deterministic in nature, making them unable to capture predictive uncertainty. We propose E4G, a deep learning framework for high frequency EEG artifact detection. Our framework exploits the early exit paradigm, building an implicit ensemble of models capable of capturing uncertainty. We evaluate our approach on the Temple University Hospital EEG Artifact Corpus (v2.0) achieving state-of-the-art classification results. In addition, E4G provides well-calibrated uncertainty metrics comparable to sampling techniques like Monte Carlo dropout in just a single forward pass. E4G opens the door to uncertainty-aware artifact detection supporting clinicians-in-the-loop frameworks.