Hjalmar S. Kühl

Timm Haucke, Hjalmar S. Kühl, Volker Steinhage

The development and application of modern technology is an essential basis for the efficient monitoring of species in natural habitats and landscapes to trace the development of ecosystems, species communities, and populations, and to analyze reasons of changes. For estimating animal abundance using methods such as camera trap distance sampling, spatial information of natural habitats in terms of 3D (three-dimensional) measurements is crucial. Additionally, 3D information improves the accuracy of animal detection using camera trapping. This study presents a novel approach to 3D camera trapping featuring highly optimized hardware and software. This approach employs stereo vision to infer 3D information of natural habitats and is designated as StereO CameRA Trap for monitoring of biodivErSity (SOCRATES). A comprehensive evaluation of SOCRATES shows not only a $3.23\%$ improvement in animal detection (bounding box $\text{mAP}_{75}$) but also its superior applicability for estimating animal abundance using camera trap distance sampling. The software and documentation of SOCRATES is provided at https://github.com/timmh/socrates

Franz Anders, Ammie K. Kalan, Hjalmar S. Kühl et al.

Automatic detection systems are important in passive acoustic monitoring (PAM) systems, as these record large amounts of audio data which are infeasible for humans to evaluate manually. In this paper we evaluated methods for compensating class imbalance for deep-learning based automatic detection of acoustic chimpanzee calls. The prevalence of chimpanzee calls in natural habitats is very rare, i.e. databases feature a heavy imbalance between background and target calls. Such imbalances can have negative effects on classifier performances. We employed a state-of-the-art detection approach based on convolutional recurrent neural networks (CRNNs). We extended the detection pipeline through various stages for compensating class imbalance. These included (1) spectrogram denoising, (2) alternative loss functions, and (3) resampling. Our key findings are: (1) spectrogram denoising operations significantly improved performance for both target classes, (2) standard binary cross entropy reached the highest performance, and (3) manipulating relative class imbalance through resampling either decreased or maintained performance depending on the target class. Finally, we reached detection performances of 33% for drumming and 5% for vocalization, which is a >7 fold increase compared to previously published results. We conclude that supporting the network to learn decoupling noise conditions from foreground classes is of primary importance for increasing performance.

Timm Haucke, Hjalmar S. Kühl, Jacqueline Hoyer et al.

The biodiversity crisis is still accelerating, despite increasing efforts by the international community. Estimating animal abundance is of critical importance to assess, for example, the consequences of land-use change and invasive species on community composition, or the effectiveness of conservation interventions. Various approaches have been developed to estimate abundance of unmarked animal populations. Whereas these approaches differ in methodological details, they all require the estimation of the effective area surveyed in front of a camera trap. Until now camera-to-animal distance measurements are derived by laborious, manual and subjective estimation methods. To overcome this distance estimation bottleneck, this study proposes an automatized pipeline utilizing monocular depth estimation and depth image calibration methods. We are able to reduce the manual effort required by a factor greater than 21 and provide our system at https://timm.haucke.xyz/publications/distance-estimation-animal-abundance