Balázs Gulyás

Jiaxing Xu, Qingtian Bian, Xinhang Li et al.

Functional magnetic resonance imaging (fMRI) is a commonly used technique to measure neural activation. Its application has been particularly important in identifying underlying neurodegenerative conditions such as Parkinson's, Alzheimer's, and Autism. Recent analysis of fMRI data models the brain as a graph and extracts features by graph neural networks (GNNs). However, the unique characteristics of fMRI data require a special design of GNN. Tailoring GNN to generate effective and domain-explainable features remains challenging. In this paper, we propose a contrastive dual-attention block and a differentiable graph pooling method called ContrastPool to better utilize GNN for brain networks, meeting fMRI-specific requirements. We apply our method to 5 resting-state fMRI brain network datasets of 3 diseases and demonstrate its superiority over state-of-the-art baselines. Our case study confirms that the patterns extracted by our method match the domain knowledge in neuroscience literature, and disclose direct and interesting insights. Our contributions underscore the potential of ContrastPool for advancing the understanding of brain networks and neurodegenerative conditions. The source code is available at https://github.com/AngusMonroe/ContrastPool.

Muyun Jiang, Yi Ding, Wei Zhang et al.

Covert speech involves imagining speaking without audible sound or any movements. Decoding covert speech from electroencephalogram (EEG) is challenging due to a limited understanding of neural pronunciation mapping and the low signal-to-noise ratio of the signal. In this study, we developed a large-scale multi-utterance speech EEG dataset from 57 right-handed native English-speaking subjects, each performing covert and overt speech tasks by repeating the same word in five utterances within a ten-second duration. Given the spatio-temporal nature of the neural activation process during speech pronunciation, we developed a Functional Areas Spatio-temporal Transformer (FAST), an effective framework for converting EEG signals into tokens and utilizing transformer architecture for sequence encoding. Our results reveal distinct and interpretable speech neural features by the visualization of FAST-generated activation maps across frontal and temporal brain regions with each word being covertly spoken, providing new insights into the discriminative features of the neural representation of covert speech. This is the first report of such a study, which provides interpretable evidence for speech decoding from EEG. The code for this work has been made public at https://github.com/Jiang-Muyun/FAST

Satya P. Singh, Lipo Wang, Sukrit Gupta et al.

The rapid advancements in machine learning, graphics processing technologies and the availability of medical imaging data have led to a rapid increase in the use of deep learning models in the medical domain. This was exacerbated by the rapid advancements in convolutional neural network (CNN) based architectures, which were adopted by the medical imaging community to assist clinicians in disease diagnosis. Since the grand success of AlexNet in 2012, CNNs have been increasingly used in medical image analysis to improve the efficiency of human clinicians. In recent years, three-dimensional (3D) CNNs have been employed for the analysis of medical images. In this paper, we trace the history of how the 3D CNN was developed from its machine learning roots, we provide a brief mathematical description of 3D CNN and provide the preprocessing steps required for medical images before feeding them to 3D CNNs. We review the significant research in the field of 3D medical imaging analysis using 3D CNNs (and its variants) in different medical areas such as classification, segmentation, detection and localization. We conclude by discussing the challenges associated with the use of 3D CNNs in the medical imaging domain (and the use of deep learning models in general) and possible future trends in the field.