LGSep 19, 2022
A cost-based multi-layer network approach for the discovery of patient phenotypesClara Puga, Uli Niemann, Winfried Schlee et al.
Clinical records frequently include assessments of the characteristics of patients, which may include the completion of various questionnaires. These questionnaires provide a variety of perspectives on a patient's current state of well-being. Not only is it critical to capture the heterogeneity given by these perspectives, but there is also a growing demand for developing cost-effective technologies for clinical phenotyping. Filling out many questionnaires may be a strain for the patients and therefore costly. In this work, we propose COBALT -- a cost-based layer selector model for detecting phenotypes using a community detection approach. Our goal is to minimize the number of features used to build these phenotypes while preserving its quality. We test our model using questionnaire data from chronic tinnitus patients and represent the data in a multi-layer network structure. The model is then evaluated by predicting post-treatment data using baseline features (age, gender, and pre-treatment data) as well as the identified phenotypes as a feature. For some post-treatment variables, predictors using phenotypes from COBALT as features outperformed those using phenotypes detected by traditional clustering methods. Moreover, using phenotype data to predict post-treatment data proved beneficial in comparison with predictors that were solely trained with baseline features.
LGJun 10, 2024
Training and Validating a Treatment Recommender with Partial Verification EvidenceVishnu Unnikrishnan, Clara Puga, Miro Schleicher et al.
Current clinical decision support systems (DSS) are trained and validated on observational data from the target clinic. This is problematic for treatments validated in a randomized clinical trial (RCT), but not yet introduced in any clinic. In this work, we report on a method for training and validating the DSS using the RCT data. The key challenges we address are of missingness -- missing rationale for treatment assignment (the assignment is at random), and missing verification evidence, since the effectiveness of a treatment for a patient can only be verified (ground truth) for treatments what were actually assigned to a patient. We use data from a multi-armed RCT that investigated the effectiveness of single- and combination- treatments for 240+ tinnitus patients recruited and treated in 5 clinical centers. To deal with the 'missing rationale' challenge, we re-model the target variable (outcome) in order to suppress the effect of the randomly-assigned treatment, and control on the effect of treatment in general. Our methods are also robust to missing values in features and with a small number of patients per RCT arm. We deal with 'missing verification evidence' by using counterfactual treatment verification, which compares the effectiveness of the DSS recommendations to the effectiveness of the RCT assignments when they are aligned v/s not aligned. We demonstrate that our approach leverages the RCT data for learning and verification, by showing that the DSS suggests treatments that improve the outcome. The results are limited through the small number of patients per treatment; while our ensemble is designed to mitigate this effect, the predictive performance of the methods is affected by the smallness of the data. We provide a basis for the establishment of decision supporting routines on treatments that have been tested in RCTs but have not yet been deployed clinically.
HCJul 2, 2021
Are Non-Experts Able to Comprehend Business Process Models -- Study Insights Involving Novices and ExpertsMichael Winter, Rüdiger Pryss, Thomas Probst et al.
The comprehension of business process models is crucial for enterprises. Prior research has shown that children as well as adolescents perceive and interpret graphical representations in a different manner compared to grown-ups. To evaluate this, observations in the context of business process models are presented in this paper obtained from a study on visual literacy in cultural education. We demonstrate that adolescents without expertise in process model comprehension are able to correctly interpret business process models expressed in terms of BPMN 2.0. In a comprehensive study, n = 205 learners (i.e., pupils at the age of 15) needed to answer questions related to process models they were confronted with, reflecting different levels of complexity. In addition, process models were created with varying styles of element labels. Study results indicate that an abstract description (i.e., using only alphabetic letters) of process models is understood more easily compared to concrete or pseudo} descriptions. As benchmark, results are compared with the ones of modeling experts (n = 40). Amongst others, study findings suggest using abstract descriptions in order to introduce novices to process modeling notations. With the obtained insights, we highlight that process models can be properly comprehended by novices.
SEApr 28, 2021
Medical device regulation efforts for mHealth apps -- An experience report of Corona Check and Corona HealthMarc Holfelder, Lena Mulansky, Winfried Schlee et al.
Within the healthcare environment, mobile health (mHealth) applications (apps) are more and more important. The number of new mHealth apps has risen steadily in the last years. Especially the Covid-19 pandemic has led to an enormous amount of app releases. Notably, in most countries, mHealth applications have to be already compliant with several regulatory aspects in order to be declared to be a 'medical app'. However, the latest applicable medical device regulation (MDR) does not comment in more detail on the topic of the requirements for mHealth applications. When developing a medical app, it is essential that all contributors in an interdisciplinary team - especially the software engineers - are aware of the specific regulatory requirements beforehand. The development process, however, should not be stalled too long due to the integration of the MDR. Therefore, a developing framework, which includes these aspects, is required, to enable a smooth development process. The paper at hand introduces the creation of such a framework on the basis of the Corona Health and Corona Check apps. The relevant regulatory guidelines are listed and summarized to a guidance for medical app developments. In particular, the important stages and faced challenges emerged during the entire development process are highlighted.
SEMar 25, 2021
Developing Apps for Researching the COVID-19 Pandemic with the TrackYourHealth PlatformCarsten Vogel, Rüdiger Pryss, Johannes Schobel et al.
Through lockdowns and other severe changes to daily life, almost everyone is affected by the COVID-19 pandemic. Scientists and medical doctors are - among others - mainly interested in researching, monitoring, and improving physical and mental health of the general population. Mobile health apps (mHealth), and apps conducting ecological momentary assessments (EMA) respectively, can help in this context. However, developing such mobile applications poses many challenges like costly software development efforts, strict privacy rules, compliance with ethical guidelines, local laws, and regulations. In this paper, we present TrackYourHealth (TYH), a highly configurable, generic, and modular mobile data collection and EMA platform, which enabled us to develop and release two mobile multi-platform applications related to COVID-19 in just a few weeks. We present TYH and highlight specific challenges researchers and developers of similar apps may also face, especially when developing apps related to the medical field.
CYJul 4, 2018
Context Data Categories and Privacy Model for Mobile Data Collection AppsFelix Beierle, Vinh Thuy Tran, Mathias Allemand et al.
Context-aware applications stemming from diverse fields like mobile health, recommender systems, and mobile commerce potentially benefit from knowing aspects of the user's personality. As filling out personality questionnaires is tedious, we propose the prediction of the user's personality from smartphone sensor and usage data. In order to collect data for researching the relationship between smartphone data and personality, we developed the Android app TYDR (Track Your Daily Routine) which tracks smartphone data and utilizes psychometric personality questionnaires. With TYDR, we track a larger variety of smartphone data than similar existing apps, including metadata on notifications, photos taken, and music played back by the user. For the development of TYDR, we introduce a general context data model consisting of four categories that focus on the user's different types of interactions with the smartphone: physical conditions and activity, device status and usage, core functions usage, and app usage. On top of this, we develop the privacy model PM-MoDaC specifically for apps related to the collection of mobile data, consisting of nine proposed privacy measures. We present the implementation of all of those measures in TYDR. Although the utilization of the user's personality based on the usage of his or her smartphone is a challenging endeavor, it seems to be a promising approach for various types of context-aware mobile applications.
CYMar 18, 2018
TYDR - Track Your Daily Routine. Android App for Tracking Smartphone Sensor and Usage DataFelix Beierle, Vinh Thuy Tran, Mathias Allemand et al.
We present the Android app TYDR (Track Your Daily Routine) which tracks smartphone sensor and usage data and utilizes standardized psychometric personality questionnaires. With the app, we aim at collecting data for researching correlations between the tracked smartphone data and the user's personality in order to predict personality from smartphone data. In this paper, we highlight our approaches in addressing the challenges in developing such an app. We optimize the tracking of sensor data by assessing the trade-off of size of data and battery consumption and granularity of the stored information. Our user interface is designed to incentivize users to install the app and fill out questionnaires. TYDR processes and visualizes the tracked sensor and usage data as well as the results of the personality questionnaires. When developing an app that will be used in psychological studies, requirements posed by ethics commissions / institutional review boards and data protection officials have to be met. We detail our approaches concerning those requirements regarding the anonymized storing of user data, informing the users about the data collection, and enabling an opt-out option. We present our process for anonymized data storing while still being able to identify individual users who successfully completed a psychological study with the app.