31.5APMar 27
Graph Attention Network-Based Detection of Autism Spectrum DisorderAbigail Kelly, Ramchandra Rimal, Arpan Sainju
Autism Spectrum Disorder (ASD) is a neurodevelopmental condition characterized by atypical brain connectivity. One of the crucial steps in addressing ASD is its early detection. This study introduces a novel computational framework that employs an Attention-Based Graph Convolutional Network, referred to as the GATGraphClassifier, for detecting ASD. We utilize Functional Magnetic Resonance Imaging (fMRI) data from the Autism Brain Imaging Data Exchange (ABIDE) repository to construct functional connectivity matrices using Pearson correlation, which captures interactions between various brain regions. These matrices are then transformed into graph representations, where the nodes and edges represent the brain regions and functional connections, respectively. The GATGraphClassifier employs attention mechanisms to identify critical connectivity patterns, thereby enhancing the model's interpretability and diagnostic accuracy. Our proposed framework demonstrates superior performance across all standard classification metrics compared to existing state-of-the-art methods. Notably, we achieved an average accuracy of 88.79\% on the test data over 30 independent runs, surpassing the benchmark model's performance by 12.27\%. In addition, we identified the crucial brain regions associated with ASD, consistent with the previous studies, and a few novel regions. This study not only contributes to the advancement of ASD detection but also shows the potential for broader adaptability of GATGraphClassifier in analyzing complex relational data in various fields, where understanding intricate connectivity and interaction patterns is essential.
IVSep 18, 2022
Comparative study of machine learning and deep learning methods on ASD classificationRamchandra Rimal, Mitchell Brannon, Yingxin Wang et al.
The autism dataset is studied to identify the differences between autistic and healthy groups. For this, the resting-state Functional Magnetic Resonance Imaging (rs-fMRI) data of the two groups are analyzed, and networks of connections between brain regions were created. Several classification frameworks are developed to distinguish the connectivity patterns between the groups. The best models for statistical inference and precision were compared, and the tradeoff between precision and model interpretability was analyzed. Finally, the classification accuracy measures were reported to justify the performance of our framework. Our best model can classify autistic and healthy patients on the multisite ABIDE I data with 71% accuracy.
MLOct 3, 2019
Sparse Popularity Adjusted Stochastic Block ModelMajid Noroozi, Marianna Pensky, Ramchandra Rimal
In the present paper we study a sparse stochastic network enabled with a block structure. The popular Stochastic Block Model (SBM) and the Degree Corrected Block Model (DCBM) address sparsity by placing an upper bound on the maximum probability of connections between any pair of nodes. As a result, sparsity describes only the behavior of network as a whole, without distinguishing between the block-dependent sparsity patterns. To the best of our knowledge, the recently introduced Popularity Adjusted Block Model (PABM) is the only block model that allows to introduce a {\it structural sparsity} where some probabilities of connections are identically equal to zero while the rest of them remain above a certain threshold. The latter presents a more nuanced view of the network.