Yuhang Shi

CV
5papers
38citations
Novelty32%
AI Score29

5 Papers

CVAug 5, 2024Code
Interactive 3D Medical Image Segmentation with SAM 2

Chuyun Shen, Wenhao Li, Yuhang Shi et al.

Interactive medical image segmentation (IMIS) has shown significant potential in enhancing segmentation accuracy by integrating iterative feedback from medical professionals. However, the limited availability of enough 3D medical data restricts the generalization and robustness of most IMIS methods. The Segment Anything Model (SAM), though effective for 2D images, requires expensive semi-auto slice-by-slice annotations for 3D medical images. In this paper, we explore the zero-shot capabilities of SAM 2, the next-generation Meta SAM model trained on videos, for 3D medical image segmentation. By treating sequential 2D slices of 3D images as video frames, SAM 2 can fully automatically propagate annotations from a single frame to the entire 3D volume. We propose a practical pipeline for using SAM 2 in 3D medical image segmentation and present key findings highlighting its efficiency and potential for further optimization. Concretely, numerical experiments on the BraTS2020 and the medical segmentation decathlon datasets demonstrate that SAM 2 still has a gap with supervised methods but can narrow the gap in specific settings and organ types, significantly reducing the annotation burden on medical professionals. Our code will be open-sourced and available at https://github.com/Chuyun-Shen/SAM_2_Medical_3D.

IVSep 16, 2022
Whole-Body Lesion Segmentation in 18F-FDG PET/CT

Jia Zhang, Yukun Huang, Zheng Zhang et al.

There has been growing research interest in using deep learning based method to achieve fully automated segmentation of lesion in Positron emission tomography computed tomography(PET CT) scans for the prognosis of various cancers. Recent advances in the medical image segmentation shows the nnUNET is feasible for diverse tasks. However, lesion segmentation in the PET images is not straightforward, because lesion and physiological uptake has similar distribution patterns. The Distinction of them requires extra structural information in the CT images. The present paper introduces a nnUNet based method for the lesion segmentation task. The proposed model is designed on the basis of the joint 2D and 3D nnUNET architecture to predict lesions across the whole body. It allows for automated segmentation of potential lesions. We evaluate the proposed method in the context of AutoPet Challenge, which measures the lesion segmentation performance in the metrics of dice score, false-positive volume and false-negative volume.

ITNov 30, 2023
Channel-Feedback-Free Transmission for Downlink FD-RAN: A Radio Map based Complex-valued Precoding Network Approach

Jiwei Zhao, Jiacheng Chen, Zeyu Sun et al.

As the demand for high-quality services proliferates, an innovative network architecture, the fully-decoupled RAN (FD-RAN), has emerged for more flexible spectrum resource utilization and lower network costs. However, with the decoupling of uplink base stations and downlink base stations in FD-RAN, the traditional transmission mechanism, which relies on real-time channel feedback, is not suitable as the receiver is not able to feedback accurate and timely channel state information to the transmitter. This paper proposes a novel transmission scheme without relying on physical layer channel feedback. Specifically, we design a radio map based complex-valued precoding network~(RMCPNet) model, which outputs the base station precoding based on user location. RMCPNet comprises multiple subnets, with each subnet responsible for extracting unique modal features from diverse input modalities. Furthermore, the multi-modal embeddings derived from these distinct subnets are integrated within the information fusion layer, culminating in a unified representation. We also develop a specific RMCPNet training algorithm that employs the negative spectral efficiency as the loss function. We evaluate the performance of the proposed scheme on the public DeepMIMO dataset and show that RMCPNet can achieve 16\% and 76\% performance improvements over the conventional real-valued neural network and statistical codebook approach, respectively.

CVSep 15, 2024Code
Enhancing Lesion Segmentation in PET/CT Imaging with Deep Learning and Advanced Data Preprocessing Techniques

Jiayi Liu, Qiaoyi Xue, Youdan Feng et al.

The escalating global cancer burden underscores the critical need for precise diagnostic tools in oncology. This research employs deep learning to enhance lesion segmentation in PET/CT imaging, utilizing a dataset of 900 whole-body FDG-PET/CT and 600 PSMA-PET/CT studies from the AutoPET challenge III. Our methodical approach includes robust preprocessing and data augmentation techniques to ensure model robustness and generalizability. We investigate the influence of non-zero normalization and modifications to the data augmentation pipeline, such as the introduction of RandGaussianSharpen and adjustments to the Gamma transform parameter. This study aims to contribute to the standardization of preprocessing and augmentation strategies in PET/CT imaging, potentially improving the diagnostic accuracy and the personalized management of cancer patients. Our code will be open-sourced and available at https://github.com/jiayiliu-pku/DC2024.

CVSep 15, 2024Code
Automated Lesion Segmentation in Whole-Body PET/CT in a multitracer setting

Qiaoyi Xue, Youdan Feng, Jiayi Liu et al.

This study explores a workflow for automated segmentation of lesions in FDG and PSMA PET/CT images. Due to the substantial differences in image characteristics between FDG and PSMA, specialized preprocessing steps are required. Utilizing YOLOv8 for data classification, the FDG and PSMA images are preprocessed separately before feeding them into the segmentation models, aiming to improve lesion segmentation accuracy. The study focuses on evaluating the performance of automated segmentation workflow for multitracer PET images. The findings are expected to provide critical insights for enhancing diagnostic workflows and patient-specific treatment plans. Our code will be open-sourced and available at https://github.com/jiayiliu-pku/AP2024.