Amy Tabb

Abubakar Siddique, Amy Tabb, Henry Medeiros

Convolutional neural networks trained using manually generated labels are commonly used for semantic or instance segmentation. In precision agriculture, automated flower detection methods use supervised models and post-processing techniques that may not perform consistently as the appearance of the flowers and the data acquisition conditions vary. We propose a self-supervised learning strategy to enhance the sensitivity of segmentation models to different flower species using automatically generated pseudo-labels. We employ a data augmentation and refinement approach to improve the accuracy of the model predictions. The augmented semantic predictions are then converted to panoptic pseudo-labels to iteratively train a multi-task model. The self-supervised model predictions can be refined with existing post-processing approaches to further improve their accuracy. An evaluation on a multi-species fruit tree flower dataset demonstrates that our method outperforms state-of-the-art models without computationally expensive post-processing steps, providing a new baseline for flower detection applications.

Amy Tabb, Henry Medeiros, Mitchell J. Feldmann et al.

This paper describes CALICO, a method for multi-camera calibration suitable for challenging contexts: stationary and mobile multi-camera systems, cameras without overlapping fields of view, and non-synchronized cameras. Recent approaches are roughly divided into infrastructure- and pattern-based. Infrastructure-based approaches use the scene's features to calibrate, while pattern-based approaches use calibration patterns. Infrastructure-based approaches are not suitable for stationary camera systems, and pattern-based approaches may constrain camera placement because shared fields of view or extremely large patterns are required. CALICO is a pattern-based approach, where the multi-calibration problem is formulated using rigidity constraints between patterns and cameras. We use a {\it pattern rig}: several patterns rigidly attached to each other or some structure. We express the calibration problem as that of algebraic and reprojection error minimization problems. Simulated and real experiments demonstrate the method in a variety of settings. CALICO compared favorably to Kalibr. Mean reconstruction accuracy error was $\le 0.71$ mm for real camera rigs, and $\le 1.11$ for simulated camera rigs. Code and data releases are available at \cite{tabb_amy_2019_3520866} and \url{https://github.com/amy-tabb/calico}.

Philipe A. Dias, Zhou Shen, Amy Tabb et al.

Large-scale annotation of image segmentation datasets is often prohibitively expensive, as it usually requires a huge number of worker hours to obtain high-quality results. Abundant and reliable data has been, however, crucial for the advances on image understanding tasks achieved by deep learning models. In this paper, we introduce FreeLabel, an intuitive open-source web interface that allows users to obtain high-quality segmentation masks with just a few freehand scribbles, in a matter of seconds. The efficacy of FreeLabel is quantitatively demonstrated by experimental results on the PASCAL dataset as well as on a dataset from the agricultural domain. Designed to benefit the computer vision community, FreeLabel can be used for both crowdsourced or private annotation and has a modular structure that can be easily adapted for any image dataset.

Dmytro Mishkin, Amy Tabb, Jiri Matas

We claim, and present evidence, that allowing arXiv publication before a conference or journal submission benefits researchers, especially early career, as well as the whole scientific community. Specifically, arXiving helps professional identity building, protects against independent re-discovery, idea theft and gate-keeping; it facilitates open research result distribution and reduces inequality. The advantages dwarf the drawbacks -- mainly the relative increase in acceptance rate of papers of well-known authors -- which studies show to be marginal. Analyzing the pros and cons of arXiving papers, we conclude that requiring preprints be anonymous is nearly as detrimental as not allowing them. We see no reasons why anyone but the authors should decide whether to arXiv or not.

Qin Zhang, Manoj Karkee, Amy Tabb

Book chapter that summarizes recent research on agricultural robotics in orchard management, including Robotic pruning, Robotic thinning, Robotic spraying, Robotic harvesting, Robotic fruit transportation, and future trends.

Amy Tabb, Khalil M. Ahmad Yousef

Robot-world, hand-eye calibration is the problem of determining the transformation between the robot end-effector and a camera, as well as the transformation between the robot base and the world coordinate system. This relationship has been modeled as $\mathbf{AX}=\mathbf{ZB}$, where $\mathbf{X}$ and $\mathbf{Z}$ are unknown homogeneous transformation matrices. The successful execution of many robot manipulation tasks depends on determining these matrices accurately, and we are particularly interested in the use of calibration for use in vision tasks. In this work, we describe a collection of methods consisting of two cost function classes, three different parameterizations of rotation components, and separable versus simultaneous formulations. We explore the behavior of this collection of methods on real datasets and simulated datasets, and compare to seven other state-of-the-art methods. Our collection of methods return greater accuracy on many metrics as compared to the state-of-the-art. The collection of methods is extended to the problem of robot-world hand-multiple-eye calibration, and results are shown with two and three cameras mounted on the same robot.

Amy Tabb, Germán A Holguín, Rachel Naegele

Images are used frequently in plant phenotyping to capture measurements. This chapter offers a repeatable method for capturing two-dimensional measurements of plant parts in field or laboratory settings using a variety of camera styles (cellular phone, DSLR), with the addition of a printed calibration pattern. The method is based on calibrating the camera using information available from the EXIF tags from the image, as well as visual information from the pattern. Code is provided to implement the method, as well as a dataset for testing. We include steps to verify protocol correctness by imaging an artifact. The use of this protocol for two-dimensional plant phenotyping will allow data capture from different cameras and environments, with comparison on the same physical scale. We abbreviate this method as CASS, for CAmera aS Scanner. Code and data is available at http://doi.org/10.5281/zenodo.3677473.

Brian Stumph, Miguel Hernandez Virto, Henry Medeiros et al.

A key aspect to controlling and reducing the effects invasive insect species have on agriculture is to obtain knowledge about the migration patterns of these species. Current state-of-the-art methods of studying these migration patterns involve a mark-release-recapture technique, in which insects are released after being marked and researchers attempt to recapture them later. However, this approach involves a human researcher manually searching for these insects in large fields and results in very low recapture rates. In this paper, we propose an automated system for detecting released insects using an unmanned aerial vehicle. This system utilizes ultraviolet lighting technology, digital cameras, and lightweight computer vision algorithms to more quickly and accurately detect insects compared to the current state of the art. The efficiency and accuracy that this system provides will allow for a more comprehensive understanding of invasive insect species migration patterns. Our experimental results demonstrate that our system can detect real target insects in field conditions with high precision and recall rates.

Philipe A. Dias, Amy Tabb, Henry Medeiros

In fruit production, critical crop management decisions are guided by bloom intensity, i.e., the number of flowers present in an orchard. Despite its importance, bloom intensity is still typically estimated by means of human visual inspection. Existing automated computer vision systems for flower identification are based on hand-engineered techniques that work only under specific conditions and with limited performance. This work proposes an automated technique for flower identification that is robust to uncontrolled environments and applicable to different flower species. Our method relies on an end-to-end residual convolutional neural network (CNN) that represents the state-of-the-art in semantic segmentation. To enhance its sensitivity to flowers, we fine-tune this network using a single dataset of apple flower images. Since CNNs tend to produce coarse segmentations, we employ a refinement method to better distinguish between individual flower instances. Without any pre-processing or dataset-specific training, experimental results on images of apple, peach and pear flowers, acquired under different conditions demonstrate the robustness and broad applicability of our method.

Amy Tabb, Keith E. Duncan, Christopher N. Topp

The segmentation of plant roots from soil and other growing media in X-ray computed tomography images is needed to effectively study the root system architecture without excavation. However, segmentation is a challenging problem in this context because the root and non-root regions share similar features. In this paper, we describe a method based on level sets and specifically adapted for this segmentation problem. In particular, we deal with the issues of using a level sets approach on large image volumes for root segmentation, and track active regions of the front using an occupancy grid. This method allows for straightforward modifications to a narrow-band algorithm such that excessive forward and backward movements of the front can be avoided, distance map computations in a narrow band context can be done in linear time through modification of Meijster et al.'s distance transform algorithm, and regions of the image volume are iteratively used to estimate distributions for root versus non-root classes. Results are shown of three plant species of different maturity levels, grown in three different media. Our method compares favorably to a state-of-the-art method for root segmentation in X-ray CT image volumes.

Philipe A. Dias, Amy Tabb, Henry Medeiros

To optimize fruit production, a portion of the flowers and fruitlets of apple trees must be removed early in the growing season. The proportion to be removed is determined by the bloom intensity, i.e., the number of flowers present in the orchard. Several automated computer vision systems have been proposed to estimate bloom intensity, but their overall performance is still far from satisfactory even in relatively controlled environments. With the goal of devising a technique for flower identification which is robust to clutter and to changes in illumination, this paper presents a method in which a pre-trained convolutional neural network is fine-tuned to become specially sensitive to flowers. Experimental results on a challenging dataset demonstrate that our method significantly outperforms three approaches that represent the state of the art in flower detection, with recall and precision rates higher than $90\%$. Moreover, a performance assessment on three additional datasets previously unseen by the network, which consist of different flower species and were acquired under different conditions, reveals that the proposed method highly surpasses baseline approaches in terms of generalization capability.

Amy Tabb, Henry Medeiros

The autonomous measurement of tree traits, such as branching structure, branch diameters, branch lengths, and branch angles, is required for tasks such as robotic pruning of trees as well as structural phenotyping. We propose a robotic vision system called the Robotic System for Tree Shape Estimation (RoTSE) to determine tree traits in field settings. The process is composed of the following stages: image acquisition with a mobile robot unit, segmentation, reconstruction, curve skeletonization, conversion to a graph representation, and then computation of traits. Quantitative and qualitative results on apple trees are shown in terms of accuracy, computation time, and robustness. Compared to ground truth measurements, the RoTSE produced the following estimates: branch diameter (root mean-squared error $2.97$ mm), branch length (root mean-squared error $136.92$ mm), and branch angle (mean-squared error $31.07$ degrees). The average run time was $8.47$ minutes when the voxel resolution was $3$ mm$^3$.

Amy Tabb, Henry Medeiros

We consider the problem of extracting curve skeletons of three-dimensional, elongated objects given a noisy surface, which has applications in agricultural contexts such as extracting the branching structure of plants. We describe an efficient and robust method based on breadth-first search that can determine curve skeletons in these contexts. Our approach is capable of automatically detecting junction points as well as spurious segments and loops. All of that is accomplished with only one user-adjustable parameter. The run time of our method ranges from hundreds of milliseconds to less than four seconds on large, challenging datasets, which makes it appropriate for situations where real-time decision making is needed. Experiments on synthetic models as well as on data from real world objects, some of which were collected in challenging field conditions, show that our approach compares favorably to classical thinning algorithms as well as to recent contributions to the field.

Amy Tabb, Henry Medeiros

Segmentation in dynamic outdoor environments can be difficult when the illumination levels and other aspects of the scene cannot be controlled. Specifically in orchard and vineyard automation contexts, a background material is often used to shield a camera's field of view from other rows of crops. In this paper, we describe a method that uses superpixels to determine low texture regions of the image that correspond to the background material, and then show how this information can be integrated with the color distribution of the image to compute optimal segmentation parameters to segment objects of interest. Quantitative and qualitative experiments demonstrate the suitability of this approach for dynamic outdoor environments, specifically for tree reconstruction and apple flower detection applications.