Stephen Casey

Stephen Casey

The best way to model, understand, and quantify the information contained in complex systems is an open question in physics, mathematics, and computer science. The uncertain relationship between entropy and complexity further complicates this question. With ideas drawn from the object-relations theory of psychology, this paper develops an object-relations model of complex systems which generalizes to systems of all types, including mathematical operations, machines, biological organisms, and social structures. The resulting Complex Information Entropy (CIE) equation is a robust method to quantify complexity across various contexts. The paper also describes algorithms to iteratively update and improve approximate solutions to the CIE equation, to recursively infer the composition of complex systems, and to discover the connections among objects across different lengthscales and timescales. Applications are discussed in the fields of engineering design, atomic and molecular physics, chemistry, materials science, neuroscience, psychology, sociology, ecology, economics, and medicine.

Willis Hoke, Daniel Shea, Stephen Casey

Molecular dynamics simulations produce data with complex nonlinear dynamics. If the timestep behavior of such a dynamic system can be represented by a linear operator, future states can be inferred directly without expensive simulations. The use of an autoencoder in combination with a physical timestep operator allows both the relevant structural characteristics of the molecular graphs and the underlying physics of the system to be isolated during the training process. In this work, we develop a pipeline for establishing graph-structured representations of time-series volumetric data from molecular dynamics simulations. We then train an autoencoder to find nonlinear mappings to a latent space where future timesteps can be predicted through application of a linear operator trained in tandem with the autoencoder. Increasing the dimensionality of the autoencoder output is shown to improve the accuracy of the physical timestep operator.