Anuroop Sriram

LG
h-index90
35papers
6,425citations
Novelty47%
AI Score49

35 Papers

MTRL-SCIJun 17, 2022Code
The Open Catalyst 2022 (OC22) Dataset and Challenges for Oxide Electrocatalysts

Richard Tran, Janice Lan, Muhammed Shuaibi et al. · baidu, cmu

The development of machine learning models for electrocatalysts requires a broad set of training data to enable their use across a wide variety of materials. One class of materials that currently lacks sufficient training data is oxides, which are critical for the development of OER catalysts. To address this, we developed the OC22 dataset, consisting of 62,331 DFT relaxations (~9,854,504 single point calculations) across a range of oxide materials, coverages, and adsorbates. We define generalized total energy tasks that enable property prediction beyond adsorption energies; we test baseline performance of several graph neural networks; and we provide pre-defined dataset splits to establish clear benchmarks for future efforts. In the most general task, GemNet-OC sees a ~36% improvement in energy predictions when combining the chemically dissimilar OC20 and OC22 datasets via fine-tuning. Similarly, we achieved a ~19% improvement in total energy predictions on OC20 and a ~9% improvement in force predictions in OC22 when using joint training. We demonstrate the practical utility of a top performing model by capturing literature adsorption energies and important OER scaling relationships. We expect OC22 to provide an important benchmark for models seeking to incorporate intricate long-range electrostatic and magnetic interactions in oxide surfaces. Dataset and baseline models are open sourced, and a public leaderboard is available to encourage continued community developments on the total energy tasks and data.

MTRL-SCINov 1, 2023Code
The Open DAC 2023 Dataset and Challenges for Sorbent Discovery in Direct Air Capture

Anuroop Sriram, Sihoon Choi, Xiaohan Yu et al. · baidu, cmu

New methods for carbon dioxide removal are urgently needed to combat global climate change. Direct air capture (DAC) is an emerging technology to capture carbon dioxide directly from ambient air. Metal-organic frameworks (MOFs) have been widely studied as potentially customizable adsorbents for DAC. However, discovering promising MOF sorbents for DAC is challenging because of the vast chemical space to explore and the need to understand materials as functions of humidity and temperature. We explore a computational approach benefiting from recent innovations in machine learning (ML) and present a dataset named Open DAC 2023 (ODAC23) consisting of more than 38M density functional theory (DFT) calculations on more than 8,400 MOF materials containing adsorbed $CO_2$ and/or $H_2O$. ODAC23 is by far the largest dataset of MOF adsorption calculations at the DFT level of accuracy currently available. In addition to probing properties of adsorbed molecules, the dataset is a rich source of information on structural relaxation of MOFs, which will be useful in many contexts beyond specific applications for DAC. A large number of MOFs with promising properties for DAC are identified directly in ODAC23. We also trained state-of-the-art ML models on this dataset to approximate calculations at the DFT level. This open-source dataset and our initial ML models will provide an important baseline for future efforts to identify MOFs for a wide range of applications, including DAC.

LGApr 6, 2022Code
GemNet-OC: Developing Graph Neural Networks for Large and Diverse Molecular Simulation Datasets

Johannes Gasteiger, Muhammed Shuaibi, Anuroop Sriram et al. · baidu, cmu

Recent years have seen the advent of molecular simulation datasets that are orders of magnitude larger and more diverse. These new datasets differ substantially in four aspects of complexity: 1. Chemical diversity (number of different elements), 2. system size (number of atoms per sample), 3. dataset size (number of data samples), and 4. domain shift (similarity of the training and test set). Despite these large differences, benchmarks on small and narrow datasets remain the predominant method of demonstrating progress in graph neural networks (GNNs) for molecular simulation, likely due to cheaper training compute requirements. This raises the question -- does GNN progress on small and narrow datasets translate to these more complex datasets? This work investigates this question by first developing the GemNet-OC model based on the large Open Catalyst 2020 (OC20) dataset. GemNet-OC outperforms the previous state-of-the-art on OC20 by 16% while reducing training time by a factor of 10. We then compare the impact of 18 model components and hyperparameter choices on performance in multiple datasets. We find that the resulting model would be drastically different depending on the dataset used for making model choices. To isolate the source of this discrepancy we study six subsets of the OC20 dataset that individually test each of the above-mentioned four dataset aspects. We find that results on the OC-2M subset correlate well with the full OC20 dataset while being substantially cheaper to train on. Our findings challenge the common practice of developing GNNs solely on small datasets, but highlight ways of achieving fast development cycles and generalizable results via moderately-sized, representative datasets such as OC-2M and efficient models such as GemNet-OC. Our code and pretrained model weights are open-sourced.

CHEM-PHJun 29, 2022
Spherical Channels for Modeling Atomic Interactions

C. Lawrence Zitnick, Abhishek Das, Adeesh Kolluru et al. · baidu, cmu

Modeling the energy and forces of atomic systems is a fundamental problem in computational chemistry with the potential to help address many of the world's most pressing problems, including those related to energy scarcity and climate change. These calculations are traditionally performed using Density Functional Theory, which is computationally very expensive. Machine learning has the potential to dramatically improve the efficiency of these calculations from days or hours to seconds. We propose the Spherical Channel Network (SCN) to model atomic energies and forces. The SCN is a graph neural network where nodes represent atoms and edges their neighboring atoms. The atom embeddings are a set of spherical functions, called spherical channels, represented using spherical harmonics. We demonstrate, that by rotating the embeddings based on the 3D edge orientation, more information may be utilized while maintaining the rotational equivariance of the messages. While equivariance is a desirable property, we find that by relaxing this constraint in both message passing and aggregation, improved accuracy may be achieved. We demonstrate state-of-the-art results on the large-scale Open Catalyst dataset in both energy and force prediction for numerous tasks and metrics.

LGMar 18, 2022
Towards Training Billion Parameter Graph Neural Networks for Atomic Simulations

Anuroop Sriram, Abhishek Das, Brandon M. Wood et al. · baidu, cmu

Recent progress in Graph Neural Networks (GNNs) for modeling atomic simulations has the potential to revolutionize catalyst discovery, which is a key step in making progress towards the energy breakthroughs needed to combat climate change. However, the GNNs that have proven most effective for this task are memory intensive as they model higher-order interactions in the graphs such as those between triplets or quadruplets of atoms, making it challenging to scale these models. In this paper, we introduce Graph Parallelism, a method to distribute input graphs across multiple GPUs, enabling us to train very large GNNs with hundreds of millions or billions of parameters. We empirically evaluate our method by scaling up the number of parameters of the recently proposed DimeNet++ and GemNet models by over an order of magnitude. On the large-scale Open Catalyst 2020 (OC20) dataset, these graph-parallelized models lead to relative improvements of 1) 15% on the force MAE metric for the S2EF task and 2) 21% on the AFbT metric for the IS2RS task, establishing new state-of-the-art results.

CLJun 27, 2022
Wav2Vec-Aug: Improved self-supervised training with limited data

Anuroop Sriram, Michael Auli, Alexei Baevski · baidu, cmu

Self-supervised learning (SSL) of speech representations has received much attention over the last few years but most work has focused on languages and domains with an abundance of unlabeled data. However, for many languages there is a shortage even in the unlabeled data which limits the effectiveness of SSL. In this work, we focus on the problem of applying SSL to domains with limited available data by leveraging data augmentation for Wav2Vec 2.0 pretraining. Further, we propose improvements to each component of the model which result in a combined relative word error rate (WER) improvement of up to 13% compared to Wav2Vec 2.0 on Librispeech test-clean / other.

LGJul 30, 2024
Distribution Learning for Molecular Regression

Nima Shoghi, Pooya Shoghi, Anuroop Sriram et al. · baidu, cmu

Using "soft" targets to improve model performance has been shown to be effective in classification settings, but the usage of soft targets for regression is a much less studied topic in machine learning. The existing literature on the usage of soft targets for regression fails to properly assess the method's limitations, and empirical evaluation is quite limited. In this work, we assess the strengths and drawbacks of existing methods when applied to molecular property regression tasks. Our assessment outlines key biases present in existing methods and proposes methods to address them, evaluated through careful ablation studies. We leverage these insights to propose Distributional Mixture of Experts (DMoE): A model-independent, and data-independent method for regression which trains a model to predict probability distributions of its targets. Our proposed loss function combines the cross entropy between predicted and target distributions and the L1 distance between their expected values to produce a loss function that is robust to the outlined biases. We evaluate the performance of DMoE on different molecular property prediction datasets -- Open Catalyst (OC20), MD17, and QM9 -- across different backbone model architectures -- SchNet, GemNet, and Graphormer. Our results demonstrate that the proposed method is a promising alternative to classical regression for molecular property prediction tasks, showing improvements over baselines on all datasets and architectures.

LGMar 5, 2025Code
All-atom Diffusion Transformers: Unified generative modelling of molecules and materials

Chaitanya K. Joshi, Xiang Fu, Yi-Lun Liao et al. · baidu, cmu

Diffusion models are the standard toolkit for generative modelling of 3D atomic systems. However, for different types of atomic systems -- such as molecules and materials -- the generative processes are usually highly specific to the target system despite the underlying physics being the same. We introduce the All-atom Diffusion Transformer (ADiT), a unified latent diffusion framework for jointly generating both periodic materials and non-periodic molecular systems using the same model: (1) An autoencoder maps a unified, all-atom representations of molecules and materials to a shared latent embedding space; and (2) A diffusion model is trained to generate new latent embeddings that the autoencoder can decode to sample new molecules or materials. Experiments on MP20, QM9 and GEOM-DRUGS datasets demonstrate that jointly trained ADiT generates realistic and valid molecules as well as materials, obtaining state-of-the-art results on par with molecule and crystal-specific models. ADiT uses standard Transformers with minimal inductive biases for both the autoencoder and diffusion model, resulting in significant speedups during training and inference compared to equivariant diffusion models. Scaling ADiT up to half a billion parameters predictably improves performance, representing a step towards broadly generalizable foundation models for generative chemistry. Open source code: https://github.com/facebookresearch/all-atom-diffusion-transformer

LGApr 16, 2025Code
Adjoint Sampling: Highly Scalable Diffusion Samplers via Adjoint Matching

Aaron Havens, Benjamin Kurt Miller, Bing Yan et al. · baidu, cmu

We introduce Adjoint Sampling, a highly scalable and efficient algorithm for learning diffusion processes that sample from unnormalized densities, or energy functions. It is the first on-policy approach that allows significantly more gradient updates than the number of energy evaluations and model samples, allowing us to scale to much larger problem settings than previously explored by similar methods. Our framework is theoretically grounded in stochastic optimal control and shares the same theoretical guarantees as Adjoint Matching, being able to train without the need for corrective measures that push samples towards the target distribution. We show how to incorporate key symmetries, as well as periodic boundary conditions, for modeling molecules in both cartesian and torsional coordinates. We demonstrate the effectiveness of our approach through extensive experiments on classical energy functions, and further scale up to neural network-based energy models where we perform amortized conformer generation across many molecular systems. To encourage further research in developing highly scalable sampling methods, we plan to open source these challenging benchmarks, where successful methods can directly impact progress in computational chemistry.

CHEM-PHAug 4, 2025Code
FastCSP: Accelerated Molecular Crystal Structure Prediction with Universal Model for Atoms

Vahe Gharakhanyan, Yi Yang, Luis Barroso-Luque et al. · baidu, cmu

Crystal Structure Prediction (CSP) of molecular crystals plays a central role in applications, such as pharmaceuticals and organic electronics. CSP is challenging and computationally expensive due to the need to explore a large search space with sufficient accuracy to capture energy differences of a few kJ/mol between polymorphs. Dispersion-inclusive density functional theory (DFT) provides the required accuracy but its computational cost is impractical for a large number of putative structures. We introduce FastCSP, an open-source, high-throughput CSP workflow based on machine learning interatomic potentials (MLIPs). FastCSP combines random structure generation using Genarris 3.0 with geometry relaxation and free energy calculations powered entirely by the Universal Model for Atoms (UMA) MLIP. We benchmark FastCSP on a curated set of 28 mostly rigid molecules, demonstrating that our workflow consistently generates known experimental structures and ranks them within 5 kJ/mol per molecule of the global minimum. Our results demonstrate that universal MLIPs can be used across diverse compounds without requiring system-specific tuning. Moreover, the speed and accuracy afforded by UMA eliminate the need for classical force fields in the early stages of CSP and for final re-ranking with DFT. The open-source release of the entire FastCSP workflow significantly lowers the barrier to accessing CSP. CSP results for a single system can be obtained within hours on tens of modern GPUs, making high-throughput crystal structure prediction feasible for a broad range of scientific applications.

SDApr 2, 2021Code
Robust wav2vec 2.0: Analyzing Domain Shift in Self-Supervised Pre-Training

Wei-Ning Hsu, Anuroop Sriram, Alexei Baevski et al.

Self-supervised learning of speech representations has been a very active research area but most work is focused on a single domain such as read audio books for which there exist large quantities of labeled and unlabeled data. In this paper, we explore more general setups where the domain of the unlabeled data for pre-training data differs from the domain of the labeled data for fine-tuning, which in turn may differ from the test data domain. Our experiments show that using target domain data during pre-training leads to large performance improvements across a variety of setups. On a large-scale competitive setup, we show that pre-training on unlabeled in-domain data reduces the gap between models trained on in-domain and out-of-domain labeled data by 66%-73%. This has obvious practical implications since it is much easier to obtain unlabeled target domain data than labeled data. Moreover, we find that pre-training on multiple domains improves generalization performance on domains not seen during training. Code and models will be made available at https://github.com/pytorch/fairseq.

LGFeb 6, 2024
Fine-Tuned Language Models Generate Stable Inorganic Materials as Text

Nate Gruver, Anuroop Sriram, Andrea Madotto et al. · baidu, cmu

We propose fine-tuning large language models for generation of stable materials. While unorthodox, fine-tuning large language models on text-encoded atomistic data is simple to implement yet reliable, with around 90% of sampled structures obeying physical constraints on atom positions and charges. Using energy above hull calculations from both learned ML potentials and gold-standard DFT calculations, we show that our strongest model (fine-tuned LLaMA-2 70B) can generate materials predicted to be metastable at about twice the rate (49% vs 28%) of CDVAE, a competing diffusion model. Because of text prompting's inherent flexibility, our models can simultaneously be used for unconditional generation of stable material, infilling of partial structures and text-conditional generation. Finally, we show that language models' ability to capture key symmetries of crystal structures improves with model scale, suggesting that the biases of pretrained LLMs are surprisingly well-suited for atomistic data.

LGOct 30, 2024
FlowLLM: Flow Matching for Material Generation with Large Language Models as Base Distributions

Anuroop Sriram, Benjamin Kurt Miller, Ricky T. Q. Chen et al. · baidu, cmu

Material discovery is a critical area of research with the potential to revolutionize various fields, including carbon capture, renewable energy, and electronics. However, the immense scale of the chemical space makes it challenging to explore all possible materials experimentally. In this paper, we introduce FlowLLM, a novel generative model that combines large language models (LLMs) and Riemannian flow matching (RFM) to design novel crystalline materials. FlowLLM first fine-tunes an LLM to learn an effective base distribution of meta-stable crystals in a text representation. After converting to a graph representation, the RFM model takes samples from the LLM and iteratively refines the coordinates and lattice parameters. Our approach significantly outperforms state-of-the-art methods, increasing the generation rate of stable materials by over three times and increasing the rate for stable, unique, and novel crystals by $\sim50\%$ - a huge improvement on a difficult problem. Additionally, the crystals generated by FlowLLM are much closer to their relaxed state when compared with another leading model, significantly reducing post-hoc computational cost.

LGJun 30, 2025
UMA: A Family of Universal Models for Atoms

Brandon M. Wood, Misko Dzamba, Xiang Fu et al. · baidu, cmu

The ability to quickly and accurately compute properties from atomic simulations is critical for advancing a large number of applications in chemistry and materials science including drug discovery, energy storage, and semiconductor manufacturing. To address this need, Meta FAIR presents a family of Universal Models for Atoms (UMA), designed to push the frontier of speed, accuracy, and generalization. UMA models are trained on half a billion unique 3D atomic structures (the largest training runs to date) by compiling data across multiple chemical domains, e.g. molecules, materials, and catalysts. We develop empirical scaling laws to help understand how to increase model capacity alongside dataset size to achieve the best accuracy. The UMA small and medium models utilize a novel architectural design we refer to as mixture of linear experts that enables increasing model capacity without sacrificing speed. For example, UMA-medium has 1.4B parameters but only ~50M active parameters per atomic structure. We evaluate UMA models on a diverse set of applications across multiple domains and find that, remarkably, a single model without any fine-tuning can perform similarly or better than specialized models. We are releasing the UMA code, weights, and associated data to accelerate computational workflows and enable the community to continue to build increasingly capable AI models.

LGDec 4, 2024
Flow Matching with General Discrete Paths: A Kinetic-Optimal Perspective

Neta Shaul, Itai Gat, Marton Havasi et al. · baidu, cmu

The design space of discrete-space diffusion or flow generative models are significantly less well-understood than their continuous-space counterparts, with many works focusing only on a simple masked construction. In this work, we aim to take a holistic approach to the construction of discrete generative models based on continuous-time Markov chains, and for the first time, allow the use of arbitrary discrete probability paths, or colloquially, corruption processes. Through the lens of optimizing the symmetric kinetic energy, we propose velocity formulas that can be applied to any given probability path, completely decoupling the probability and velocity, and giving the user the freedom to specify any desirable probability path based on expert knowledge specific to the data domain. Furthermore, we find that a special construction of mixture probability paths optimizes the symmetric kinetic energy for the discrete case. We empirically validate the usefulness of this new design space across multiple modalities: text generation, inorganic material generation, and image generation. We find that we can outperform the mask construction even in text with kinetic-optimal mixture paths, while we can make use of domain-specific constructions of the probability path over the visual domain.

MTRL-SCIAug 5, 2025
The Open DAC 2025 Dataset for Sorbent Discovery in Direct Air Capture

Anuroop Sriram, Logan M. Brabson, Xiaohan Yu et al. · baidu, cmu

Identifying useful sorbent materials for direct air capture (DAC) from humid air remains a challenge. We present the Open DAC 2025 (ODAC25) dataset, a significant expansion and improvement upon ODAC23 (Sriram et al., ACS Central Science, 10 (2024) 923), comprising nearly 60 million DFT single-point calculations for CO$_2$, H$_2$O, N$_2$, and O$_2$ adsorption in 15,000 MOFs. ODAC25 introduces chemical and configurational diversity through functionalized MOFs, high-energy GCMC-derived placements, and synthetically generated frameworks. ODAC25 also significantly improves upon the accuracy of DFT calculations and the treatment of flexible MOFs in ODAC23. Along with the dataset, we release new state-of-the-art machine-learned interatomic potentials trained on ODAC25 and evaluate them on adsorption energy and Henry's law coefficient predictions.

LGJun 7, 2024
FlowMM: Generating Materials with Riemannian Flow Matching

Benjamin Kurt Miller, Ricky T. Q. Chen, Anuroop Sriram et al.

Crystalline materials are a fundamental component in next-generation technologies, yet modeling their distribution presents unique computational challenges. Of the plausible arrangements of atoms in a periodic lattice only a vanishingly small percentage are thermodynamically stable, which is a key indicator of the materials that can be experimentally realized. Two fundamental tasks in this area are to (a) predict the stable crystal structure of a known composition of elements and (b) propose novel compositions along with their stable structures. We present FlowMM, a pair of generative models that achieve state-of-the-art performance on both tasks while being more efficient and more flexible than competing methods. We generalize Riemannian Flow Matching to suit the symmetries inherent to crystals: translation, rotation, permutation, and periodic boundary conditions. Our framework enables the freedom to choose the flow base distributions, drastically simplifying the problem of learning crystal structures compared with diffusion models. In addition to standard benchmarks, we validate FlowMM's generated structures with quantum chemistry calculations, demonstrating that it is about 3x more efficient, in terms of integration steps, at finding stable materials compared to previous open methods.

LGJun 17, 2021
Rotation Invariant Graph Neural Networks using Spin Convolutions

Muhammed Shuaibi, Adeesh Kolluru, Abhishek Das et al.

Progress towards the energy breakthroughs needed to combat climate change can be significantly accelerated through the efficient simulation of atomic systems. Simulation techniques based on first principles, such as Density Functional Theory (DFT), are limited in their practical use due to their high computational expense. Machine learning approaches have the potential to approximate DFT in a computationally efficient manner, which could dramatically increase the impact of computational simulations on real-world problems. Approximating DFT poses several challenges. These include accurately modeling the subtle changes in the relative positions and angles between atoms, and enforcing constraints such as rotation invariance or energy conservation. We introduce a novel approach to modeling angular information between sets of neighboring atoms in a graph neural network. Rotation invariance is achieved for the network's edge messages through the use of a per-edge local coordinate frame and a novel spin convolution over the remaining degree of freedom. Two model variants are proposed for the applications of structure relaxation and molecular dynamics. State-of-the-art results are demonstrated on the large-scale Open Catalyst 2020 dataset. Comparisons are also performed on the MD17 and QM9 datasets.

LGMar 2, 2021
ForceNet: A Graph Neural Network for Large-Scale Quantum Calculations

Weihua Hu, Muhammed Shuaibi, Abhishek Das et al.

With massive amounts of atomic simulation data available, there is a huge opportunity to develop fast and accurate machine learning models to approximate expensive physics-based calculations. The key quantity to estimate is atomic forces, where the state-of-the-art Graph Neural Networks (GNNs) explicitly enforce basic physical constraints such as rotation-covariance. However, to strictly satisfy the physical constraints, existing models have to make tradeoffs between computational efficiency and model expressiveness. Here we explore an alternative approach. By not imposing explicit physical constraints, we can flexibly design expressive models while maintaining their computational efficiency. Physical constraints are implicitly imposed by training the models using physics-based data augmentation. To evaluate the approach, we carefully design a scalable and expressive GNN model, ForceNet, and apply it to OC20 (Chanussot et al., 2020), an unprecedentedly-large dataset of quantum physics calculations. Our proposed ForceNet is able to predict atomic forces more accurately than state-of-the-art physics-based GNNs while being faster both in training and inference. Overall, our promising and counter-intuitive results open up an exciting avenue for future research.

CVJan 13, 2021
COVID-19 Prognosis via Self-Supervised Representation Learning and Multi-Image Prediction

Anuroop Sriram, Matthew Muckley, Koustuv Sinha et al.

The rapid spread of COVID-19 cases in recent months has strained hospital resources, making rapid and accurate triage of patients presenting to emergency departments a necessity. Machine learning techniques using clinical data such as chest X-rays have been used to predict which patients are most at risk of deterioration. We consider the task of predicting two types of patient deterioration based on chest X-rays: adverse event deterioration (i.e., transfer to the intensive care unit, intubation, or mortality) and increased oxygen requirements beyond 6 L per day. Due to the relative scarcity of COVID-19 patient data, existing solutions leverage supervised pretraining on related non-COVID images, but this is limited by the differences between the pretraining data and the target COVID-19 patient data. In this paper, we use self-supervised learning based on the momentum contrast (MoCo) method in the pretraining phase to learn more general image representations to use for downstream tasks. We present three results. The first is deterioration prediction from a single image, where our model achieves an area under receiver operating characteristic curve (AUC) of 0.742 for predicting an adverse event within 96 hours (compared to 0.703 with supervised pretraining) and an AUC of 0.765 for predicting oxygen requirements greater than 6 L a day at 24 hours (compared to 0.749 with supervised pretraining). We then propose a new transformer-based architecture that can process sequences of multiple images for prediction and show that this model can achieve an improved AUC of 0.786 for predicting an adverse event at 96 hours and an AUC of 0.848 for predicting mortalities at 96 hours. A small pilot clinical study suggested that the prediction accuracy of our model is comparable to that of experienced radiologists analyzing the same information.

IVDec 9, 2020
Results of the 2020 fastMRI Challenge for Machine Learning MR Image Reconstruction

Matthew J. Muckley, Bruno Riemenschneider, Alireza Radmanesh et al.

Accelerating MRI scans is one of the principal outstanding problems in the MRI research community. Towards this goal, we hosted the second fastMRI competition targeted towards reconstructing MR images with subsampled k-space data. We provided participants with data from 7,299 clinical brain scans (de-identified via a HIPAA-compliant procedure by NYU Langone Health), holding back the fully-sampled data from 894 of these scans for challenge evaluation purposes. In contrast to the 2019 challenge, we focused our radiologist evaluations on pathological assessment in brain images. We also debuted a new Transfer track that required participants to submit models evaluated on MRI scanners from outside the training set. We received 19 submissions from eight different groups. Results showed one team scoring best in both SSIM scores and qualitative radiologist evaluations. We also performed analysis on alternative metrics to mitigate the effects of background noise and collected feedback from the participants to inform future challenges. Lastly, we identify common failure modes across the submissions, highlighting areas of need for future research in the MRI reconstruction community.

ASDec 7, 2020
MLS: A Large-Scale Multilingual Dataset for Speech Research

Vineel Pratap, Qiantong Xu, Anuroop Sriram et al.

This paper introduces Multilingual LibriSpeech (MLS) dataset, a large multilingual corpus suitable for speech research. The dataset is derived from read audiobooks from LibriVox and consists of 8 languages, including about 44.5K hours of English and a total of about 6K hours for other languages. Additionally, we provide Language Models (LM) and baseline Automatic Speech Recognition (ASR) models and for all the languages in our dataset. We believe such a large transcribed dataset will open new avenues in ASR and Text-To-Speech (TTS) research. The dataset will be made freely available for anyone at http://www.openslr.org.

MTRL-SCIOct 20, 2020
The Open Catalyst 2020 (OC20) Dataset and Community Challenges

Lowik Chanussot, Abhishek Das, Siddharth Goyal et al.

Catalyst discovery and optimization is key to solving many societal and energy challenges including solar fuels synthesis, long-term energy storage, and renewable fertilizer production. Despite considerable effort by the catalysis community to apply machine learning models to the computational catalyst discovery process, it remains an open challenge to build models that can generalize across both elemental compositions of surfaces and adsorbate identity/configurations, perhaps because datasets have been smaller in catalysis than related fields. To address this we developed the OC20 dataset, consisting of 1,281,040 Density Functional Theory (DFT) relaxations (~264,890,000 single point evaluations) across a wide swath of materials, surfaces, and adsorbates (nitrogen, carbon, and oxygen chemistries). We supplemented this dataset with randomly perturbed structures, short timescale molecular dynamics, and electronic structure analyses. The dataset comprises three central tasks indicative of day-to-day catalyst modeling and comes with pre-defined train/validation/test splits to facilitate direct comparisons with future model development efforts. We applied three state-of-the-art graph neural network models (CGCNN, SchNet, Dimenet++) to each of these tasks as baseline demonstrations for the community to build on. In almost every task, no upper limit on model size was identified, suggesting that even larger models are likely to improve on initial results. The dataset and baseline models are both provided as open resources, as well as a public leader board to encourage community contributions to solve these important tasks.

MTRL-SCIOct 14, 2020
An Introduction to Electrocatalyst Design using Machine Learning for Renewable Energy Storage

C. Lawrence Zitnick, Lowik Chanussot, Abhishek Das et al.

Scalable and cost-effective solutions to renewable energy storage are essential to addressing the world's rising energy needs while reducing climate change. As we increase our reliance on renewable energy sources such as wind and solar, which produce intermittent power, storage is needed to transfer power from times of peak generation to peak demand. This may require the storage of power for hours, days, or months. One solution that offers the potential of scaling to nation-sized grids is the conversion of renewable energy to other fuels, such as hydrogen or methane. To be widely adopted, this process requires cost-effective solutions to running electrochemical reactions. An open challenge is finding low-cost electrocatalysts to drive these reactions at high rates. Through the use of quantum mechanical simulations (density functional theory), new catalyst structures can be tested and evaluated. Unfortunately, the high computational cost of these simulations limits the number of structures that may be tested. The use of machine learning may provide a method to efficiently approximate these calculations, leading to new approaches in finding effective electrocatalysts. In this paper, we provide an introduction to the challenges in finding suitable electrocatalysts, how machine learning may be applied to the problem, and the use of the Open Catalyst Project OC20 dataset for model training.

ASJul 6, 2020
Massively Multilingual ASR: 50 Languages, 1 Model, 1 Billion Parameters

Vineel Pratap, Anuroop Sriram, Paden Tomasello et al.

We study training a single acoustic model for multiple languages with the aim of improving automatic speech recognition (ASR) performance on low-resource languages, and over-all simplifying deployment of ASR systems that support diverse languages. We perform an extensive benchmark on 51 languages, with varying amount of training data by language(from 100 hours to 1100 hours). We compare three variants of multilingual training from a single joint model without knowing the input language, to using this information, to multiple heads (one per language cluster). We show that multilingual training of ASR models on several languages can improve recognition performance, in particular, on low resource languages. We see 20.9%, 23% and 28.8% average WER relative reduction compared to monolingual baselines on joint model, joint model with language input and multi head model respectively. To our knowledge, this is the first work studying multilingual ASR at massive scale, with more than 50 languages and more than 16,000 hours of audio across them.

IVApr 14, 2020
End-to-End Variational Networks for Accelerated MRI Reconstruction

Anuroop Sriram, Jure Zbontar, Tullie Murrell et al.

The slow acquisition speed of magnetic resonance imaging (MRI) has led to the development of two complementary methods: acquiring multiple views of the anatomy simultaneously (parallel imaging) and acquiring fewer samples than necessary for traditional signal processing methods (compressed sensing). While the combination of these methods has the potential to allow much faster scan times, reconstruction from such undersampled multi-coil data has remained an open problem. In this paper, we present a new approach to this problem that extends previously proposed variational methods by learning fully end-to-end. Our method obtains new state-of-the-art results on the fastMRI dataset for both brain and knee MRIs.

IVJan 6, 2020
Advancing machine learning for MR image reconstruction with an open competition: Overview of the 2019 fastMRI challenge

Florian Knoll, Tullie Murrell, Anuroop Sriram et al.

Purpose: To advance research in the field of machine learning for MR image reconstruction with an open challenge. Methods: We provided participants with a dataset of raw k-space data from 1,594 consecutive clinical exams of the knee. The goal of the challenge was to reconstruct images from these data. In order to strike a balance between realistic data and a shallow learning curve for those not already familiar with MR image reconstruction, we ran multiple tracks for multi-coil and single-coil data. We performed a two-stage evaluation based on quantitative image metrics followed by evaluation by a panel of radiologists. The challenge ran from June to December of 2019. Results: We received a total of 33 challenge submissions. All participants chose to submit results from supervised machine learning approaches. Conclusion: The challenge led to new developments in machine learning for image reconstruction, provided insight into the current state of the art in the field, and highlighted remaining hurdles for clinical adoption.

CLNov 19, 2019
End-to-end ASR: from Supervised to Semi-Supervised Learning with Modern Architectures

Gabriel Synnaeve, Qiantong Xu, Jacob Kahn et al.

We study pseudo-labeling for the semi-supervised training of ResNet, Time-Depth Separable ConvNets, and Transformers for speech recognition, with either CTC or Seq2Seq loss functions. We perform experiments on the standard LibriSpeech dataset, and leverage additional unlabeled data from LibriVox through pseudo-labeling. We show that while Transformer-based acoustic models have superior performance with the supervised dataset alone, semi-supervision improves all models across architectures and loss functions and bridges much of the performance gaps between them. In doing so, we reach a new state-of-the-art for end-to-end acoustic models decoded with an external language model in the standard supervised learning setting, and a new absolute state-of-the-art with semi-supervised training. Finally, we study the effect of leveraging different amounts of unlabeled audio, propose several ways of evaluating the characteristics of unlabeled audio which improve acoustic modeling, and show that acoustic models trained with more audio rely less on external language models.

CLNov 5, 2019
RNN-T For Latency Controlled ASR With Improved Beam Search

Mahaveer Jain, Kjell Schubert, Jay Mahadeokar et al.

Neural transducer-based systems such as RNN Transducers (RNN-T) for automatic speech recognition (ASR) blend the individual components of a traditional hybrid ASR systems (acoustic model, language model, punctuation model, inverse text normalization) into one single model. This greatly simplifies training and inference and hence makes RNN-T a desirable choice for ASR systems. In this work, we investigate use of RNN-T in applications that require a tune-able latency budget during inference time. We also improved the decoding speed of the originally proposed RNN-T beam search algorithm. We evaluated our proposed system on English videos ASR dataset and show that neural RNN-T models can achieve comparable WER and better computational efficiency compared to a well tuned hybrid ASR baseline.

IVOct 27, 2019
GrappaNet: Combining Parallel Imaging with Deep Learning for Multi-Coil MRI Reconstruction

Anuroop Sriram, Jure Zbontar, Tullie Murrell et al.

Magnetic Resonance Image (MRI) acquisition is an inherently slow process which has spurred the development of two different acceleration methods: acquiring multiple correlated samples simultaneously (parallel imaging) and acquiring fewer samples than necessary for traditional signal processing methods (compressed sensing). Both methods provide complementary approaches to accelerating the speed of MRI acquisition. In this paper, we present a novel method to integrate traditional parallel imaging methods into deep neural networks that is able to generate high quality reconstructions even for high acceleration factors. The proposed method, called GrappaNet, performs progressive reconstruction by first mapping the reconstruction problem to a simpler one that can be solved by a traditional parallel imaging methods using a neural network, followed by an application of a parallel imaging method, and finally fine-tuning the output with another neural network. The entire network can be trained end-to-end. We present experimental results on the recently released fastMRI dataset and show that GrappaNet can generate higher quality reconstructions than competing methods for both $4\times$ and $8\times$ acceleration.

CVNov 21, 2018
fastMRI: An Open Dataset and Benchmarks for Accelerated MRI

Jure Zbontar, Florian Knoll, Anuroop Sriram et al.

Accelerating Magnetic Resonance Imaging (MRI) by taking fewer measurements has the potential to reduce medical costs, minimize stress to patients and make MRI possible in applications where it is currently prohibitively slow or expensive. We introduce the fastMRI dataset, a large-scale collection of both raw MR measurements and clinical MR images, that can be used for training and evaluation of machine-learning approaches to MR image reconstruction. By introducing standardized evaluation criteria and a freely-accessible dataset, our goal is to help the community make rapid advances in the state of the art for MR image reconstruction. We also provide a self-contained introduction to MRI for machine learning researchers with no medical imaging background.

CLNov 5, 2017
Robust Speech Recognition Using Generative Adversarial Networks

Anuroop Sriram, Heewoo Jun, Yashesh Gaur et al.

This paper describes a general, scalable, end-to-end framework that uses the generative adversarial network (GAN) objective to enable robust speech recognition. Encoders trained with the proposed approach enjoy improved invariance by learning to map noisy audio to the same embedding space as that of clean audio. Unlike previous methods, the new framework does not rely on domain expertise or simplifying assumptions as are often needed in signal processing, and directly encourages robustness in a data-driven way. We show the new approach improves simulated far-field speech recognition of vanilla sequence-to-sequence models without specialized front-ends or preprocessing.

CLAug 21, 2017
Cold Fusion: Training Seq2Seq Models Together with Language Models

Anuroop Sriram, Heewoo Jun, Sanjeev Satheesh et al.

Sequence-to-sequence (Seq2Seq) models with attention have excelled at tasks which involve generating natural language sentences such as machine translation, image captioning and speech recognition. Performance has further been improved by leveraging unlabeled data, often in the form of a language model. In this work, we present the Cold Fusion method, which leverages a pre-trained language model during training, and show its effectiveness on the speech recognition task. We show that Seq2Seq models with Cold Fusion are able to better utilize language information enjoying i) faster convergence and better generalization, and ii) almost complete transfer to a new domain while using less than 10% of the labeled training data.

CLJul 24, 2017
Exploring Neural Transducers for End-to-End Speech Recognition

Eric Battenberg, Jitong Chen, Rewon Child et al.

In this work, we perform an empirical comparison among the CTC, RNN-Transducer, and attention-based Seq2Seq models for end-to-end speech recognition. We show that, without any language model, Seq2Seq and RNN-Transducer models both outperform the best reported CTC models with a language model, on the popular Hub5'00 benchmark. On our internal diverse dataset, these trends continue - RNNTransducer models rescored with a language model after beam search outperform our best CTC models. These results simplify the speech recognition pipeline so that decoding can now be expressed purely as neural network operations. We also study how the choice of encoder architecture affects the performance of the three models - when all encoder layers are forward only, and when encoders downsample the input representation aggressively.

CLMay 11, 2017
Reducing Bias in Production Speech Models

Eric Battenberg, Rewon Child, Adam Coates et al.

Replacing hand-engineered pipelines with end-to-end deep learning systems has enabled strong results in applications like speech and object recognition. However, the causality and latency constraints of production systems put end-to-end speech models back into the underfitting regime and expose biases in the model that we show cannot be overcome by "scaling up", i.e., training bigger models on more data. In this work we systematically identify and address sources of bias, reducing error rates by up to 20% while remaining practical for deployment. We achieve this by utilizing improved neural architectures for streaming inference, solving optimization issues, and employing strategies that increase audio and label modelling versatility.