Sonja Johnson-Yu

Satpreet H. Singh, Sonja Johnson-Yu, Zhouyang Lu et al.

Weakly electric fish, like Gnathonemus petersii, use a remarkable electrical modality for active sensing and communication, but studying their rich electrosensing and electrocommunication behavior and associated neural activity in naturalistic settings remains experimentally challenging. Here, we present a novel biologically-inspired computational framework to study these behaviors, where recurrent neural network (RNN) based artificial agents trained via multi-agent reinforcement learning (MARL) learn to modulate their electric organ discharges (EODs) and movement patterns to collectively forage in virtual environments. Trained agents demonstrate several emergent features consistent with real fish collectives, including heavy tailed EOD interval distributions, environmental context dependent shifts in EOD interval distributions, and social interaction patterns like freeloading, where agents reduce their EOD rates while benefiting from neighboring agents' active sensing. A minimal two-fish assay further isolates the role of electro-communication, showing that access to conspecific EODs and relative dominance jointly shape foraging success. Notably, these behaviors emerge through evolution-inspired rewards for individual fitness and emergent inter-agent interactions, rather than through rewarding agents explicitly for social interactions. Our work has broad implications for the neuroethology of weakly electric fish, as well as other social, communicating animals in which extensive recordings from multiple individuals, and thus traditional data-driven modeling, are infeasible.

Raaghav Malik, Satpreet H. Singh, Sonja Johnson-Yu et al.

Larval zebrafish hunting provides a tractable setting to study how ecological and energetic constraints shape adaptive behavior in both biological brains and artificial agents. Here we develop a minimal agent-based model, training recurrent policies with deep reinforcement learning in a bout-based zebrafish simulator. Despite its simplicity, the model reproduces hallmark hunting behaviors -- including eye vergence-linked pursuit, speed modulation, and stereotyped approach trajectories -- that closely match real larval zebrafish. Quantitative trajectory analyses show that pursuit bouts systematically reduce prey angle by roughly half before strike, consistent with measurements. Virtual experiments and parameter sweeps vary ecological and energetic constraints, bout kinematics (coupled vs. uncoupled turns and forward motion), and environmental factors such as food density, food speed, and vergence limits. These manipulations reveal how constraints and environments shape pursuit dynamics, strike success, and abort rates, yielding falsifiable predictions for neuroscience experiments. These sweeps identify a compact set of constraints -- binocular sensing, the coupling of forward speed and turning in bout kinematics, and modest energetic costs on locomotion and vergence -- that are sufficient for zebrafish-like hunting to emerge. Strikingly, these behaviors arise in minimal agents without detailed biomechanics, fluid dynamics, circuit realism, or imitation learning from real zebrafish data. Taken together, this work provides a normative account of zebrafish hunting as the optimal balance between energetic cost and sensory benefit, highlighting the trade-offs that structure vergence and trajectory dynamics. We establish a virtual lab that narrows the experimental search space and generates falsifiable predictions about behavior and neural coding.

Jeremy Irvin, Hao Sheng, Neel Ramachandran et al.

Characterizing the processes leading to deforestation is critical to the development and implementation of targeted forest conservation and management policies. In this work, we develop a deep learning model called ForestNet to classify the drivers of primary forest loss in Indonesia, a country with one of the highest deforestation rates in the world. Using satellite imagery, ForestNet identifies the direct drivers of deforestation in forest loss patches of any size. We curate a dataset of Landsat 8 satellite images of known forest loss events paired with driver annotations from expert interpreters. We use the dataset to train and validate the models and demonstrate that ForestNet substantially outperforms other standard driver classification approaches. In order to support future research on automated approaches to deforestation driver classification, the dataset curated in this study is publicly available at https://stanfordmlgroup.github.io/projects/forestnet .