Claudio Ravasio

Claudio Ravasio, Lyndon Da Cruz, Christos Bergeles

We present a robust theoretical framework for the characterisation and manipulation of optical flow, i.e 2D vector fields, in the context of their use in motion estimation algorithms and beyond. The definition of two frames of reference guides the mathematical derivation of flow field application, inversion, evaluation, and composition operations. This structured approach is then used as the foundation for an implementation in Python 3, with the fully differentiable PyTorch version oflibpytorch supporting back-propagation as required for deep learning. We verify the flow composition method empirically and provide a working example for its application to optical flow ground truth in synthetic training data creation. All code is publicly available.

Theodoros Pissas, Claudio Ravasio, Lyndon Da Cruz et al.

Our work proposes neural network design choices that set the state-of-the-art on a challenging public benchmark on cataract surgery, CaDIS. Our methodology achieves strong performance across three semantic segmentation tasks with increasingly granular surgical tool class sets by effectively handling class imbalance, an inherent challenge in any surgical video. We consider and evaluate two conceptually simple data oversampling methods as well as different loss functions. We show significant performance gains across network architectures and tasks especially on the rarest tool classes, thereby presenting an approach for achieving high performance when imbalanced granular datasets are considered. Our code and trained models are available at https://github.com/RViMLab/MICCAI2021_Cataract_semantic_segmentation and qualitative results on unseen surgical video can be found at https://youtu.be/twVIPUj1WZM.

Imanol Luengo, Maria Grammatikopoulou, Rahim Mohammadi et al.

Surgical scene segmentation is essential for anatomy and instrument localization which can be further used to assess tissue-instrument interactions during a surgical procedure. In 2017, the Challenge on Automatic Tool Annotation for cataRACT Surgery (CATARACTS) released 50 cataract surgery videos accompanied by instrument usage annotations. These annotations included frame-level instrument presence information. In 2020, we released pixel-wise semantic annotations for anatomy and instruments for 4670 images sampled from 25 videos of the CATARACTS training set. The 2020 CATARACTS Semantic Segmentation Challenge, which was a sub-challenge of the 2020 MICCAI Endoscopic Vision (EndoVis) Challenge, presented three sub-tasks to assess participating solutions on anatomical structure and instrument segmentation. Their performance was assessed on a hidden test set of 531 images from 10 videos of the CATARACTS test set.