Qingli Li

Siyuan Li, Li Sun, Qingli Li

Pre-trained vision-language models like CLIP have recently shown superior performances on various downstream tasks, including image classification and segmentation. However, in fine-grained image re-identification (ReID), the labels are indexes, lacking concrete text descriptions. Therefore, it remains to be determined how such models could be applied to these tasks. This paper first finds out that simply fine-tuning the visual model initialized by the image encoder in CLIP, has already obtained competitive performances in various ReID tasks. Then we propose a two-stage strategy to facilitate a better visual representation. The key idea is to fully exploit the cross-modal description ability in CLIP through a set of learnable text tokens for each ID and give them to the text encoder to form ambiguous descriptions. In the first training stage, image and text encoders from CLIP keep fixed, and only the text tokens are optimized from scratch by the contrastive loss computed within a batch. In the second stage, the ID-specific text tokens and their encoder become static, providing constraints for fine-tuning the image encoder. With the help of the designed loss in the downstream task, the image encoder is able to represent data as vectors in the feature embedding accurately. The effectiveness of the proposed strategy is validated on several datasets for the person or vehicle ReID tasks. Code is available at https://github.com/Syliz517/CLIP-ReID.

Duowen Chen, Yunhao Bai, Wei Shen et al.

We propose a novel teacher-student model for semi-supervised multi-organ segmentation. In teacher-student model, data augmentation is usually adopted on unlabeled data to regularize the consistent training between teacher and student. We start from a key perspective that fixed relative locations and variable sizes of different organs can provide distribution information where a multi-organ CT scan is drawn. Thus, we treat the prior anatomy as a strong tool to guide the data augmentation and reduce the mismatch between labeled and unlabeled images for semi-supervised learning. More specifically, we propose a data augmentation strategy based on partition-and-recovery N$^3$ cubes cross- and within- labeled and unlabeled images. Our strategy encourages unlabeled images to learn organ semantics in relative locations from the labeled images (cross-branch) and enhances the learning ability for small organs (within-branch). For within-branch, we further propose to refine the quality of pseudo labels by blending the learned representations from small cubes to incorporate local attributes. Our method is termed as MagicNet, since it treats the CT volume as a magic-cube and N$^3$-cube partition-and-recovery process matches with the rule of playing a magic-cube. Extensive experiments on two public CT multi-organ datasets demonstrate the effectiveness of MagicNet, and noticeably outperforms state-of-the-art semi-supervised medical image segmentation approaches, with +7% DSC improvement on MACT dataset with 10% labeled images. Code is available at https://github.com/DeepMed-Lab-ECNU/MagicNet.

Xintian Mao, Jiansheng Wang, Xingran Xie et al.

Due to the computational complexity of self-attention (SA), prevalent techniques for image deblurring often resort to either adopting localized SA or employing coarse-grained global SA methods, both of which exhibit drawbacks such as compromising global modeling or lacking fine-grained correlation. In order to address this issue by effectively modeling long-range dependencies without sacrificing fine-grained details, we introduce a novel approach termed Local Frequency Transformer (LoFormer). Within each unit of LoFormer, we incorporate a Local Channel-wise SA in the frequency domain (Freq-LC) to simultaneously capture cross-covariance within low- and high-frequency local windows. These operations offer the advantage of (1) ensuring equitable learning opportunities for both coarse-grained structures and fine-grained details, and (2) exploring a broader range of representational properties compared to coarse-grained global SA methods. Additionally, we introduce an MLP Gating mechanism complementary to Freq-LC, which serves to filter out irrelevant features while enhancing global learning capabilities. Our experiments demonstrate that LoFormer significantly improves performance in the image deblurring task, achieving a PSNR of 34.09 dB on the GoPro dataset with 126G FLOPs. https://github.com/DeepMed-Lab-ECNU/Single-Image-Deblur

Ting Jin, Xingran Xie, Renjie Wan et al.

Histology analysis of the tumor micro-environment integrated with genomic assays is the gold standard for most cancers in modern medicine. This paper proposes a Gene-induced Multimodal Pre-training (GiMP) framework, which jointly incorporates genomics and Whole Slide Images (WSIs) for classification tasks. Our work aims at dealing with the main challenges of multi-modality image-omic classification w.r.t. (1) the patient-level feature extraction difficulties from gigapixel WSIs and tens of thousands of genes, and (2) effective fusion considering high-order relevance modeling. Concretely, we first propose a group multi-head self-attention gene encoder to capture global structured features in gene expression cohorts. We design a masked patch modeling paradigm (MPM) to capture the latent pathological characteristics of different tissues. The mask strategy is randomly masking a fixed-length contiguous subsequence of patch embeddings of a WSI. Finally, we combine the classification tokens of paired modalities and propose a triplet learning module to learn high-order relevance and discriminative patient-level information.After pre-training, a simple fine-tuning can be adopted to obtain the classification results. Experimental results on the TCGA dataset show the superiority of our network architectures and our pre-training framework, achieving 99.47% in accuracy for image-omic classification. The code is publicly available at https://github.com/huangwudiduan/GIMP.

Jing Zhao, Li Sun, Qingli Li

End-to-end region-based object detectors like Sparse R-CNN usually have multiple cascade bounding box decoding stages, which refine the current predictions according to their previous results. Model parameters within each stage are independent, evolving a huge cost. In this paper, we find the general setting of decoding stages is actually redundant. By simply sharing parameters and making a recursive decoder, the detector already obtains a significant improvement. The recursive decoder can be further enhanced by positional encoding (PE) of the proposal box, which makes it aware of the exact locations and sizes of input bounding boxes, thus becoming adaptive to proposals from different stages during the recursion. Moreover, we also design centerness-based PE to distinguish the RoI feature element and dynamic convolution kernels at different positions within the bounding box. To validate the effectiveness of the proposed method, we conduct intensive ablations and build the full model on three recent mainstream region-based detectors. The RecusiveDet is able to achieve obvious performance boosts with even fewer model parameters and slightly increased computation cost. Codes are available at https://github.com/bravezzzzzz/RecursiveDet.

Xueqi Hu, Xinyue Zhou, Qiusheng Huang et al.

Unpaired image-to-image (I2I) translation often requires to maximize the mutual information between the source and the translated images across different domains, which is critical for the generator to keep the source content and prevent it from unnecessary modifications. The self-supervised contrastive learning has already been successfully applied in the I2I. By constraining features from the same location to be closer than those from different ones, it implicitly ensures the result to take content from the source. However, previous work uses the features from random locations to impose the constraint, which may not be appropriate since some locations contain less information of source domain. Moreover, the feature itself does not reflect the relation with others. This paper deals with these problems by intentionally selecting significant anchor points for contrastive learning. We design a query-selected attention (QS-Attn) module, which compares feature distances in the source domain, giving an attention matrix with a probability distribution in each row. Then we select queries according to their measurement of significance, computed from the distribution. The selected ones are regarded as anchors for contrastive loss. At the same time, the reduced attention matrix is employed to route features in both domains, so that source relations maintain in the synthesis. We validate our proposed method in three different I2I datasets, showing that it increases the image quality without adding learnable parameters.

Xinyue Zhou, Mingyu Yin, Xinyuan Chen et al.

Controllable person image synthesis task enables a wide range of applications through explicit control over body pose and appearance. In this paper, we propose a cross attention based style distribution module that computes between the source semantic styles and target pose for pose transfer. The module intentionally selects the style represented by each semantic and distributes them according to the target pose. The attention matrix in cross attention expresses the dynamic similarities between the target pose and the source styles for all semantics. Therefore, it can be utilized to route the color and texture from the source image, and is further constrained by the target parsing map to achieve a clearer objective. At the same time, to encode the source appearance accurately, the self attention among different semantic styles is also added. The effectiveness of our model is validated quantitatively and qualitatively on pose transfer and virtual try-on tasks.

Xueqi Hu, Qiusheng Huang, Zhengyi Shi et al.

Existing GAN inversion methods fail to provide latent codes for reliable reconstruction and flexible editing simultaneously. This paper presents a transformer-based image inversion and editing model for pretrained StyleGAN which is not only with less distortions, but also of high quality and flexibility for editing. The proposed model employs a CNN encoder to provide multi-scale image features as keys and values. Meanwhile it regards the style code to be determined for different layers of the generator as queries. It first initializes query tokens as learnable parameters and maps them into W+ space. Then the multi-stage alternate self- and cross-attention are utilized, updating queries with the purpose of inverting the input by the generator. Moreover, based on the inverted code, we investigate the reference- and label-based attribute editing through a pretrained latent classifier, and achieve flexible image-to-image translation with high quality results. Extensive experiments are carried out, showing better performances on both inversion and editing tasks within StyleGAN.

Shaojie Guo, Haofei Song, Qingli Li et al.

This paper focuses on the dataset-free Blind Image Super-Resolution (BISR). Unlike existing dataset-free BISR methods that focus on obtaining a degradation kernel for the entire image, we are the first to explicitly design a spatially-variant degradation model for each pixel. Our method also benefits from having a significantly smaller number of learnable parameters compared to data-driven spatially-variant BISR methods. Concretely, each pixel's degradation kernel is expressed as a linear combination of a learnable dictionary composed of a small number of spatially-variant atom kernels. The coefficient matrices of the atom degradation kernels are derived using membership functions of fuzzy set theory. We construct a novel Probabilistic BISR model with tailored likelihood function and prior terms. Subsequently, we employ the Monte Carlo EM algorithm to infer the degradation kernels for each pixel. Our method achieves a significant improvement over other state-of-the-art BISR methods, with an average improvement of 1 dB (2x).Code will be released at https://github.com/shaojieguoECNU/SVDSR.

Shaoqing Duan, Haofei Song, Xintian Mao et al.

Defocus deblurring in pathological microscopy remains challenging due to the spatially varying and locally discontinuous nature of optical blur induced by a position-dependent integral imaging process. Existing deep learning methods, constrained by shift-invariance assumptions and limited interpretability, are not well suited to such heterogeneous blur patterns. Neural operators provide a principled alternative by modeling defocus formation directly as an integral operator, offering a new perspective on defocus deblurring. However, most existing neural operator architectures for low-level vision rely on globally parameterized kernels that assume smoothness and stationarity, limiting their ability to model heterogeneous and locally discontinuous blur patterns. To address this limitation, we propose the Discontinuous Galerkin Neural Operator (DGNO), which parameterizes the integral kernel using a discontinuous Galerkin formulation with element-local volume operators and interface numerical fluxes. DGNO provides a principled combination of locality, heterogeneity modeling, and global coherence while preserving the underlying physics of optical image formation. Extensive and insightful experiments demonstrate that DGNO surpasses state-of-the-arts, delivering sharper reconstructions, robust handling of spatially varying blur, and scalable high-resolution performance. The code will be released at https://github.com/DeepMed-Lab-ECNU/Single-Image-Deblur.

Xintian Mao, Haofei Song, Yin-Nian Liu et al.

It is well-known that if a network aims to learn how to deblur, it should understand the blur process. Blurring is naturally caused by the convolution of the sharp image with the blur kernel. Thus, allowing the network to learn the blur process in the kernel-level can significantly improve the image deblurring performance. But, current deep networks are still at the pixel-level learning stage, either performing end-to-end pixel-level restoration or stage-wise pseudo kernel-level restoration, failing to enable the deblur model to understand the essence of the blur. To this end, we propose Fourier Kernel Estimator (FKE), which considers the activation operation in Fourier space and converts the convolution problem in the spatial domain to a multiplication problem in Fourier space. Our FKE, jointly optimized with the deblur model, enables the network to learn the kernel-level blur process with low complexity and without any additional supervision. Furthermore, we change the convolution object of the kernel from ``image" to network extracted ``feature", whose rich semantic and structural information is more suitable to blur process learning. With the convolution of the feature and the estimated kernel, our model can learn the essence of blur in kernel-level. To further improve the efficiency of feature extraction, we design a decoupled multi-scale architecture with multiple hierarchical sub-unets with a reversible strategy, which allows better multi-scale encoding and decoding in low training memory. Extensive experiments indicate that our method achieves state-of-the-art motion deblurring results and show potential for handling other kernel-related problems. Analysis also shows our kernel estimator is able to learn physically meaningful kernels. The code will be available at https://github.com/DeepMed-Lab-ECNU/Single-Image-Deblur.

Yiman Liu, Xiaoxiang Han, Tongtong Liang et al.

This paper introduces the Efficient Decoupled Masked Autoencoder (EDMAE), a novel self-supervised method for recognizing standard views in pediatric echocardiography. EDMAE introduces a new proxy task based on the encoder-decoder structure. The EDMAE encoder is composed of a teacher and a student encoder. The teacher encoder extracts the potential representation of the masked image blocks, while the student encoder extracts the potential representation of the visible image blocks. The loss is calculated between the feature maps output by the two encoders to ensure consistency in the latent representations they extract. EDMAE uses pure convolution operations instead of the ViT structure in the MAE encoder. This improves training efficiency and convergence speed. EDMAE is pre-trained on a large-scale private dataset of pediatric echocardiography using self-supervised learning, and then fine-tuned for standard view recognition. The proposed method achieves high classification accuracy in 27 standard views of pediatric echocardiography. To further verify the effectiveness of the proposed method, the authors perform another downstream task of cardiac ultrasound segmentation on the public dataset CAMUS. The experimental results demonstrate that the proposed method outperforms some popular supervised and recent self-supervised methods, and is more competitive on different downstream tasks.

Jing Zhao, Shengjian Wu, Li Sun et al.

Without densely tiled anchor boxes or grid points in the image, sparse R-CNN achieves promising results through a set of object queries and proposal boxes updated in the cascaded training manner. However, due to the sparse nature and the one-to-one relation between the query and its attending region, it heavily depends on the self attention, which is usually inaccurate in the early training stage. Moreover, in a scene of dense objects, the object query interacts with many irrelevant ones, reducing its uniqueness and harming the performance. This paper proposes to use IoU between different boxes as a prior for the value routing in self attention. The original attention matrix multiplies the same size matrix computed from the IoU of proposal boxes, and they determine the routing scheme so that the irrelevant features can be suppressed. Furthermore, to accurately extract features for both classification and regression, we add two lightweight projection heads to provide the dynamic channel masks based on object query, and they multiply with the output from dynamic convs, making the results suitable for the two different tasks. We validate the proposed scheme on different datasets, including MS-COCO and CrowdHuman, showing that it significantly improves the performance and increases the model convergence speed.

Xingran Xie, Yan Wang, Qingli Li

Benefited from the rich and detailed spectral information in hyperspectral images (HSI), HSI offers great potential for a wide variety of medical applications such as computational pathology. But, the lack of adequate annotated data and the high spatiospectral dimensions of HSIs usually make classification networks prone to overfit. Thus, learning a general representation which can be transferred to the downstream tasks is imperative. To our knowledge, no appropriate self-supervised pre-training method has been designed for histopathology HSIs. In this paper, we introduce an efficient and effective Self-supervised Spectral Regression (S$^3$R) method, which exploits the low rank characteristic in the spectral domain of HSI. More concretely, we propose to learn a set of linear coefficients that can be used to represent one band by the remaining bands via masking out these bands. Then, the band is restored by using the learned coefficients to reweight the remaining bands. Two pre-text tasks are designed: (1)S$^3$R-CR, which regresses the linear coefficients, so that the pre-trained model understands the inherent structures of HSIs and the pathological characteristics of different morphologies; (2)S$^3$R-BR, which regresses the missing band, making the model to learn the holistic semantics of HSIs. Compared to prior arts i.e., contrastive learning methods, which focuses on natural images, S$^3$R converges at least 3 times faster, and achieves significant improvements up to 14% in accuracy when transferring to HSI classification tasks.

Yiman Liu, Qiming Huang, Xiaoxiang Han et al.

Purpose: Congenital heart defect (CHD) is the most common birth defect. Thoracic echocardiography (TTE) can provide sufficient cardiac structure information, evaluate hemodynamics and cardiac function, and is an effective method for atrial septal defect (ASD) examination. This paper aims to study a deep learning method based on cardiac ultrasound video to assist in ASD diagnosis. Materials and methods: We select two standard views of the atrial septum (subAS) and low parasternal four-compartment view (LPS4C) as the two views to identify ASD. We enlist data from 300 children patients as part of a double-blind experiment for five-fold cross-validation to verify the performance of our model. In addition, data from 30 children patients (15 positives and 15 negatives) are collected for clinician testing and compared to our model test results (these 30 samples do not participate in model training). We propose an echocardiography video-based atrial septal defect diagnosis system. In our model, we present a block random selection, maximal agreement decision and frame sampling strategy for training and testing respectively, resNet18 and r3D networks are used to extract the frame features and aggregate them to build a rich video-level representation. Results: We validate our model using our private dataset by five-cross validation. For ASD detection, we achieve 89.33 AUC, 84.95 accuracy, 85.70 sensitivity, 81.51 specificity and 81.99 F1 score. Conclusion: The proposed model is multiple instances learning-based deep learning model for video atrial septal defect detection which effectively improves ASD detection accuracy when compared to the performances of previous networks and clinical doctors.

Ling Zhang, Boxiang Yun, Ting Jin et al.

Prediction of genetic biomarkers, e.g., microsatellite instability in colorectal cancer is crucial for clinical decision making. But, two primary challenges hamper accurate prediction: (1) It is difficult to construct a pathology-aware representation involving the complex interconnections among pathological components. (2) WSIs contain a large proportion of areas unrelated to genetic biomarkers, which make the model easily overfit simple but irrelative instances. We hereby propose a Dictionary-based hierarchical pathology mining with hard-instance-assisted classifier Debiasing framework to address these challenges, dubbed as D2Bio. Our first module, dictionary-based hierarchical pathology mining, is able to mine diverse and very fine-grained pathological contextual interaction without the limit to the distances between patches. The second module, hard-instance-assisted classfier debiasing, learns a debiased classifier via focusing on hard but task-related features, without any additional annotations. Experimental results on five cohorts show the superiority of our method, with over 4% improvement in AUROC compared with the second best on the TCGA-CRC-MSI cohort. Our analysis further shows the clinical interpretability of D2Bio in genetic biomarker diagnosis and potential clinical utility in survival analysis. Code will be available at https://github.com/DeepMed-Lab-ECNU/D2Bio.

Yuejun Jiao, Song Qiu, Mingsong Chen et al.

In recent years, vehicle re-identification (Re-ID) has gained increasing importance in various applications such as assisted driving systems, traffic flow management, and vehicle tracking, due to the growth of intelligent transportation systems. However, the presence of extraneous background information and occlusions can interfere with the learning of discriminative features, leading to significant variations in the same vehicle image across different scenarios. This paper proposes a method, named graph network based on dynamic similarity adjacency matrices (DSAM-GN), which incorporates a novel approach for constructing adjacency matrices to capture spatial relationships of local features and reduce background noise. Specifically, the proposed method divides the extracted vehicle features into different patches as nodes within the graph network. A spatial attention-based similarity adjacency matrix generation (SASAMG) module is employed to compute similarity matrices of nodes, and a dynamic erasure operation is applied to disconnect nodes with low similarity, resulting in similarity adjacency matrices. Finally, the nodes and similarity adjacency matrices are fed into graph networks to extract more discriminative features for vehicle Re-ID. Experimental results on public datasets VeRi-776 and VehicleID demonstrate the effectiveness of the proposed method compared with recent works.

Yadong Lu, Shitian Zhao, Boxiang Yun et al.

Despite recent progress in enhancing the efficacy of Open-Domain Continual Learning (ODCL) in Vision-Language Models (VLM), failing to (1) correctly identify the Task-ID of a test image and (2) use only the category set corresponding to the Task-ID, while preserving the knowledge related to each domain, cannot address the two primary challenges of ODCL: forgetting old knowledge and maintaining zero-shot capabilities, as well as the confusions caused by category-relatedness between domains. In this paper, we propose a simple yet effective solution: leveraging intra-domain category-aware prototypes for ODCL in CLIP (DPeCLIP), where the prototype is the key to bridging the above two processes. Concretely, we propose a training-free Task-ID discriminator method, by utilizing prototypes as classifiers for identifying Task-IDs. Furthermore, to maintain the knowledge corresponding to each domain, we incorporate intra-domain category-aware prototypes as domain prior prompts into the training process. Extensive experiments conducted on 11 different datasets demonstrate the effectiveness of our approach, achieving 2.37% and 1.14% average improvement in class-incremental and task-incremental settings, respectively.

Haofei Song, Xintian Mao, Jing Yu et al.

Medical imaging is limited by acquisition time and scanning equipment. CT and MR volumes, reconstructed with thicker slices, are anisotropic with high in-plane resolution and low through-plane resolution. We reveal an intriguing phenomenon that due to the mentioned nature of data, performing slice-wise interpolation from the axial view can yield greater benefits than performing super-resolution from other views. Based on this observation, we propose an Inter-Intra-slice Interpolation Network (I$^3$Net), which fully explores information from high in-plane resolution and compensates for low through-plane resolution. The through-plane branch supplements the limited information contained in low through-plane resolution from high in-plane resolution and enables continual and diverse feature learning. In-plane branch transforms features to the frequency domain and enforces an equal learning opportunity for all frequency bands in a global context learning paradigm. We further propose a cross-view block to take advantage of the information from all three views online. Extensive experiments on two public datasets demonstrate the effectiveness of I$^3$Net, and noticeably outperforms state-of-the-art super-resolution, video frame interpolation and slice interpolation methods by a large margin. We achieve 43.90dB in PSNR, with at least 1.14dB improvement under the upscale factor of $\times$2 on MSD dataset with faster inference. Code is available at https://github.com/DeepMed-Lab-ECNU/Medical-Image-Reconstruction.

Siwei Xia, Li Sun, Tiantian Sun et al.

Drag-based editing within pretrained diffusion model provides a precise and flexible way to manipulate foreground objects. Traditional methods optimize the input feature obtained from DDIM inversion directly, adjusting them iteratively to guide handle points towards target locations. However, these approaches often suffer from limited accuracy due to the low representation ability of the feature in motion supervision, as well as inefficiencies caused by the large search space required for point tracking. To address these limitations, we present DragLoRA, a novel framework that integrates LoRA (Low-Rank Adaptation) adapters into the drag-based editing pipeline. To enhance the training of LoRA adapters, we introduce an additional denoising score distillation loss which regularizes the online model by aligning its output with that of the original model. Additionally, we improve the consistency of motion supervision by adapting the input features using the updated LoRA, giving a more stable and accurate input feature for subsequent operations. Building on this, we design an adaptive optimization scheme that dynamically toggles between two modes, prioritizing efficiency without compromising precision. Extensive experiments demonstrate that DragLoRA significantly enhances the control precision and computational efficiency for drag-based image editing. The Codes of DragLoRA are available at: https://github.com/Sylvie-X/DragLoRA.

Kangcheng Zhou, Jun Jiang, Qing Zhang et al.

Interpretability is significant in computational pathology, leading to the development of multimodal information integration from histopathological image and corresponding text data.However, existing multimodal methods have limited interpretability due to the lack of high-quality dataset that support explicit reasoning and inference and simple reasoning process.To address the above problems, we introduce a novel multimodal pathology large language model with strong reasoning capabilities.To improve the generation of accurate and contextually relevant textual descriptions, we design a semantic reward strategy integrated with group relative policy optimization.We construct a high-quality pathology visual question answering (VQA) dataset, specifically designed to support complex reasoning tasks.Comprehensive experiments conducted on this dataset demonstrate that our method outperforms state-of-the-art methods, even when trained with only 20% of the data.Our method also achieves comparable performance on downstream zero-shot image classification task compared with CLIP.

Xinzhang Liu, Chao Wang, Zhihao Yang et al.

TeleChat3-MoE is the latest series of TeleChat large language models, featuring a Mixture-of-Experts (MoE) architecture with parameter counts ranging from 105 billion to over one trillion,trained end-to-end on Ascend NPU cluster. This technical report mainly presents the underlying training infrastructure that enables reliable and efficient scaling to frontier model sizes. We detail systematic methodologies for operator-level and end-to-end numerical accuracy verification, ensuring consistency across hardware platforms and distributed parallelism strategies. Furthermore, we introduce a suite of performance optimizations, including interleaved pipeline scheduling, attention-aware data scheduling for long-sequence training,hierarchical and overlapped communication for expert parallelism, and DVM-based operator fusion. A systematic parallelization framework, leveraging analytical estimation and integer linear programming, is also proposed to optimize multi-dimensional parallelism configurations. Additionally, we present methodological approaches to cluster-level optimizations, addressing host- and device-bound bottlenecks during large-scale training tasks. These infrastructure advancements yield significant throughput improvements and near-linear scaling on clusters comprising thousands of devices, providing a robust foundation for large-scale language model development on hardware ecosystems.

Ling Zhang, Boxiang Yun, Qingli Li et al.

Automated pathology report generation from Whole Slide Images (WSIs) faces two key challenges: (1) lack of semantic content in visual features and (2) inherent information redundancy in WSIs. To address these issues, we propose a novel Historical Report Guided \textbf{Bi}-modal Concurrent Learning Framework for Pathology Report \textbf{Gen}eration (BiGen) emulating pathologists' diagnostic reasoning, consisting of: (1) A knowledge retrieval mechanism to provide rich semantic content, which retrieves WSI-relevant knowledge from pre-built medical knowledge bank by matching high-attention patches and (2) A bi-modal concurrent learning strategy instantiated via a learnable visual token and a learnable textual token to dynamically extract key visual features and retrieved knowledge, where weight-shared layers enable cross-modal alignment between visual features and knowledge features. Our multi-modal decoder integrates both modals for comprehensive diagnostic reports generation. Experiments on the PathText (BRCA) dataset demonstrate our framework's superiority, achieving state-of-the-art performance with 7.4\% relative improvement in NLP metrics and 19.1\% enhancement in classification metrics for Her-2 prediction versus existing methods. Ablation studies validate the necessity of our proposed modules, highlighting our method's ability to provide WSI-relevant rich semantic content and suppress information redundancy in WSIs. Code is publicly available at https://github.com/DeepMed-Lab-ECNU/BiGen.

Hang Guo, Qing Zhang, Zixuan Gao et al.

Accurate prediction of placental diseases via whole slide images (WSIs) is critical for preventing severe maternal and fetal complications. However, WSI analysis presents significant computational challenges due to the massive data volume. Existing WSI classification methods encounter critical limitations: (1) inadequate patch selection strategies that either compromise performance or fail to sufficiently reduce computational demands, and (2) the loss of global histological context resulting from patch-level processing approaches. To address these challenges, we propose an Efficient multimodal framework for Patient-level placental disease Diagnosis, named EmmPD. Our approach introduces a two-stage patch selection module that combines parameter-free and learnable compression strategies, optimally balancing computational efficiency with critical feature preservation. Additionally, we develop a hybrid multimodal fusion module that leverages adaptive graph learning to enhance pathological feature representation and incorporates textual medical reports to enrich global contextual understanding. Extensive experiments conducted on both a self-constructed patient-level Placental dataset and two public datasets demonstrating that our method achieves state-of-the-art diagnostic performance. The code is available at https://github.com/ECNU-MultiDimLab/EmmPD.

Ling Zhang, Boxiang Yun, Xingran Xie et al.

Prediction of genetic biomarkers, e.g., microsatellite instability and BRAF in colorectal cancer is crucial for clinical decision making. In this paper, we propose a whole slide image (WSI) based genetic biomarker prediction method via prompting techniques. Our work aims at addressing the following challenges: (1) extracting foreground instances related to genetic biomarkers from gigapixel WSIs, and (2) the interaction among the fine-grained pathological components in WSIs.Specifically, we leverage large language models to generate medical prompts that serve as prior knowledge in extracting instances associated with genetic biomarkers. We adopt a coarse-to-fine approach to mine biomarker information within the tumor microenvironment. This involves extracting instances related to genetic biomarkers using coarse medical prior knowledge, grouping pathology instances into fine-grained pathological components and mining their interactions. Experimental results on two colorectal cancer datasets show the superiority of our method, achieving 91.49% in AUC for MSI classification. The analysis further shows the clinical interpretability of our method. Code is publicly available at https://github.com/DeepMed-Lab-ECNU/PromptBio.

Yunhao Bai, Duowen Chen, Qingli Li et al.

In semi-supervised medical image segmentation, there exist empirical mismatch problems between labeled and unlabeled data distribution. The knowledge learned from the labeled data may be largely discarded if treating labeled and unlabeled data separately or in an inconsistent manner. We propose a straightforward method for alleviating the problem - copy-pasting labeled and unlabeled data bidirectionally, in a simple Mean Teacher architecture. The method encourages unlabeled data to learn comprehensive common semantics from the labeled data in both inward and outward directions. More importantly, the consistent learning procedure for labeled and unlabeled data can largely reduce the empirical distribution gap. In detail, we copy-paste a random crop from a labeled image (foreground) onto an unlabeled image (background) and an unlabeled image (foreground) onto a labeled image (background), respectively. The two mixed images are fed into a Student network and supervised by the mixed supervisory signals of pseudo-labels and ground-truth. We reveal that the simple mechanism of copy-pasting bidirectionally between labeled and unlabeled data is good enough and the experiments show solid gains (e.g., over 21% Dice improvement on ACDC dataset with 5% labeled data) compared with other state-of-the-arts on various semi-supervised medical image segmentation datasets. Code is available at https://github.com/DeepMed-Lab-ECNU/BCP}.

Xintian Mao, Yiming Liu, Fengze Liu et al.

Blur was naturally analyzed in the frequency domain, by estimating the latent sharp image and the blur kernel given a blurry image. Recent progress on image deblurring always designs end-to-end architectures and aims at learning the difference between blurry and sharp image pairs from pixel-level, which inevitably overlooks the importance of blur kernels. This paper reveals an intriguing phenomenon that simply applying ReLU operation on the frequency domain of a blur image followed by inverse Fourier transform, i.e., frequency selection, provides faithful information about the blur pattern (e.g., the blur direction and blur level, implicitly shows the kernel pattern). Based on this observation, we attempt to leverage kernel-level information for image deblurring networks by inserting Fourier transform, ReLU operation, and inverse Fourier transform to the standard ResBlock. 1x1 convolution is further added to let the network modulate flexible thresholds for frequency selection. We term our newly built block as Res FFT-ReLU Block, which takes advantages of both kernel-level and pixel-level features via learning frequency-spatial dual-domain representations. Extensive experiments are conducted to acquire a thorough analysis on the insights of the method. Moreover, after plugging the proposed block into NAFNet, we can achieve 33.85 dB in PSNR on GoPro dataset. Our method noticeably improves backbone architectures without introducing many parameters, while maintaining low computational complexity. Code is available at https://github.com/DeepMed-Lab/DeepRFT-AAAI2023.

Boxiang Yun, Yan Wang, Jieneng Chen et al.

Hyperspectral imaging (HSI) unlocks the huge potential to a wide variety of applications relied on high-precision pathology image segmentation, such as computational pathology and precision medicine. Since hyperspectral pathology images benefit from the rich and detailed spectral information even beyond the visible spectrum, the key to achieve high-precision hyperspectral pathology image segmentation is to felicitously model the context along high-dimensional spectral bands. Inspired by the strong context modeling ability of transformers, we hereby, for the first time, formulate the contextual feature learning across spectral bands for hyperspectral pathology image segmentation as a sequence-to-sequence prediction procedure by transformers. To assist spectral context learning procedure, we introduce two important strategies: (1) a sparsity scheme enforces the learned contextual relationship to be sparse, so as to eliminates the distraction from the redundant bands; (2) a spectral normalization, a separate group normalization for each spectral band, mitigates the nuisance caused by heterogeneous underlying distributions of bands. We name our method Spectral Transformer (SpecTr), which enjoys two benefits: (1) it has a strong ability to model long-range dependency among spectral bands, and (2) it jointly explores the spatial-spectral features of HSI. Experiments show that SpecTr outperforms other competing methods in a hyperspectral pathology image segmentation benchmark without the need of pre-training. Code is available at https://github.com/hfut-xc-yun/SpecTr.

Xiaoxiang Han, Yiman Liu, Jiang Shang et al.

Segmenting internal structure from echocardiography is essential for the diagnosis and treatment of various heart diseases. Semi-supervised learning shows its ability in alleviating annotations scarcity. While existing semi-supervised methods have been successful in image segmentation across various medical imaging modalities, few have attempted to design methods specifically addressing the challenges posed by the poor contrast, blurred edge details and noise of echocardiography. These characteristics pose challenges to the generation of high-quality pseudo-labels in semi-supervised segmentation based on Mean Teacher. Inspired by human reflection on erroneous practices, we devise an error reflection strategy for echocardiography semi-supervised segmentation architecture. The process triggers the model to reflect on inaccuracies in unlabeled image segmentation, thereby enhancing the robustness of pseudo-label generation. Specifically, the strategy is divided into two steps. The first step is called reconstruction reflection. The network is tasked with reconstructing authentic proxy images from the semantic masks of unlabeled images and their auxiliary sketches, while maximizing the structural similarity between the original inputs and the proxies. The second step is called guidance correction. Reconstruction error maps decouple unreliable segmentation regions. Then, reliable data that are more likely to occur near high-density areas are leveraged to guide the optimization of unreliable data potentially located around decision boundaries. Additionally, we introduce an effective data augmentation strategy, termed as multi-scale mixing up strategy, to minimize the empirical distribution gap between labeled and unlabeled images and perceive diverse scales of cardiac anatomical structures. Extensive experiments demonstrate the competitiveness of the proposed method.

Qing Zhang, Hang Guo, Siyuan Yang et al.

Pathological cell semantic segmentation is a fundamental technology in computational pathology, essential for applications like cancer diagnosis and effective treatment. Given that multiple cell types exist across various organs, with subtle differences in cell size and shape, multi-organ, multi-class cell segmentation is particularly challenging. Most existing methods employ multi-branch frameworks to enhance feature extraction, but often result in complex architectures. Moreover, reliance on visual information limits performance in multi-class analysis due to intricate textural details. To address these challenges, we propose a Multi-OrgaN multi-Class cell semantic segmentation method with a single brancH (MONCH) that leverages vision-language input. Specifically, we design a hierarchical feature extraction mechanism to provide coarse-to-fine-grained features for segmenting cells of various shapes, including high-frequency, convolutional, and topological features. Inspired by the synergy of textual and multi-grained visual features, we introduce a progressive prompt decoder to harmonize multimodal information, integrating features from fine to coarse granularity for better context capture. Extensive experiments on the PanNuke dataset, which has significant class imbalance and subtle cell size and shape variations, demonstrate that MONCH outperforms state-of-the-art cell segmentation methods and vision-language models. Codes and implementations will be made publicly available.

Ming Li, Wei Shen, Qingli Li et al.

The success of medical image segmentation usually requires a large number of high-quality labels. But since the labeling process is usually affected by the raters' varying skill levels and characteristics, the estimated masks provided by different raters usually suffer from high inter-rater variability. In this paper, we propose a simple yet effective Label Filling framework, termed as LF-Net, predicting the groundtruth segmentation label given only noisy annotations during training. The fundamental idea of label filling is to supervise the segmentation model by a subset of pixels with trustworthy labels, meanwhile filling labels of other pixels by mixed supervision. More concretely, we propose a qualified majority voting strategy, i.e., a threshold voting scheme is designed to model agreement among raters and the majority-voted labels of the selected subset of pixels are regarded as supervision. To fill labels of other pixels, two types of mixed auxiliary supervision are proposed: a soft label learned from intrinsic structures of noisy annotations, and raters' characteristics labels which propagate individual rater's characteristics information. LF-Net has two main advantages. 1) Training with trustworthy pixels incorporates training with confident supervision, guiding the direction of groundtruth label learning. 2) Two types of mixed supervision prevent over-fitting issues when the network is supervised by a subset of pixels, and guarantee high fidelity with the true label. Results on five datasets of diverse imaging modalities show that our LF-Net boosts segmentation accuracy in all datasets compared with state-of-the-art methods, with even a 7% improvement in DSC for MS lesion segmentation.

Xintian Mao, Qingli Li, Yan Wang

Despite the recent progress in enhancing the efficacy of image deblurring, the limited decoding capability constrains the upper limit of State-Of-The-Art (SOTA) methods. This paper proposes a pioneering work, Adaptive Patch Exiting Reversible Decoder (AdaRevD), to explore their insufficient decoding capability. By inheriting the weights of the well-trained encoder, we refactor a reversible decoder which scales up the single-decoder training to multi-decoder training while remaining GPU memory-friendly. Meanwhile, we show that our reversible structure gradually disentangles high-level degradation degree and low-level blur pattern (residual of the blur image and its sharp counterpart) from compact degradation representation. Besides, due to the spatially-variant motion blur kernels, different blur patches have various deblurring difficulties. We further introduce a classifier to learn the degradation degree of image patches, enabling them to exit at different sub-decoders for speedup. Experiments show that our AdaRevD pushes the limit of image deblurring, e.g., achieving 34.60 dB in PSNR on GoPro dataset.

Shengjian Wu, Li Sun, Qingli Li

DEtection TRansformer (DETR) becomes a dominant paradigm, mainly due to its common architecture with high accuracy and no post-processing. However, DETR suffers from unstable training dynamics. It consumes more data and epochs to converge compared with CNN-based detectors. This paper aims to stabilize DETR training through the online distillation. It utilizes a teacher model, accumulated by Exponential Moving Average (EMA), and distills its knowledge into the online model in following three aspects. First, the matching relation between object queries and ground truth (GT) boxes in the teacher is employed to guide the student, so queries within the student are not only assigned labels based on their own predictions, but also refer to the matching results from the teacher. Second, the teacher's initial query is given to the online student, and its prediction is directly constrained by the corresponding output from the teacher. Finally, the object queries from teacher's different decoding stages are used to build the auxiliary groups to accelerate the convergence. For each GT, two queries with the least matching costs are selected into this extra group, and they predict the GT box and participate the optimization. Extensive experiments show that the proposed OD-DETR successfully stabilizes the training, and significantly increases the performance without bringing in more parameters.

Qiusheng Huang, Zhilin Zheng, Xueqi Hu et al.

The image-to-image translation (I2IT) model takes a target label or a reference image as the input, and changes a source into the specified target domain. The two types of synthesis, either label- or reference-based, have substantial differences. Particularly, the label-based synthesis reflects the common characteristics of the target domain, and the reference-based shows the specific style similar to the reference. This paper intends to bridge the gap between them in the task of multi-attribute I2IT. We design the label- and reference-based encoding modules (LEM and REM) to compare the domain differences. They first transfer the source image and target label (or reference) into a common embedding space, by providing the opposite directions through the attribute difference vector. Then the two embeddings are simply fused together to form the latent code S_rand (or S_ref), reflecting the domain style differences, which is injected into each layer of the generator by SPADE. To link LEM and REM, so that two types of results benefit each other, we encourage the two latent codes to be close, and set up the cycle consistency between the forward and backward translations on them. Moreover, the interpolation between the S_rand and S_ref is also used to synthesize an extra image. Experiments show that label- and reference-based synthesis are indeed mutually promoted, so that we can have the diverse results from LEM, and high quality results with the similar style of the reference.

Qiusheng Huang, Xueqi Hu, Li Sun et al.

Image-to-image (I2I) translation is usually carried out among discrete domains. However, image domains, often corresponding to a physical value, are usually continuous. In other words, images gradually change with the value, and there exists no obvious gap between different domains. This paper intends to build the model for I2I translation among continuous varying domains. We first divide the whole domain coverage into discrete intervals, and explicitly model the latent style code for the center of each interval. To deal with continuous translation, we design the editing modules, changing the latent style code along two directions. These editing modules help to constrain the codes for domain centers during training, so that the model can better understand the relation among them. To have diverse results, the latent style code is further diversified with either the random noise or features from the reference image, giving the individual style code to the decoder for label-based or reference-based synthesis. Extensive experiments on age and viewing angle translation show that the proposed method can achieve high-quality results, and it is also flexible for users.

Hang Liu, Menghan Hu, Yuzhen Chen et al.

For people who ardently love painting but unfortunately have visual impairments, holding a paintbrush to create a work is a very difficult task. People in this special group are eager to pick up the paintbrush, like Leonardo da Vinci, to create and make full use of their own talents. Therefore, to maximally bridge this gap, we propose a painting navigation system to assist blind people in painting and artistic creation. The proposed system is composed of cognitive system and guidance system. The system adopts drawing board positioning based on QR code, brush navigation based on target detection and bush real-time positioning. Meanwhile, this paper uses human-computer interaction on the basis of voice and a simple but efficient position information coding rule. In addition, we design a criterion to efficiently judge whether the brush reaches the target or not. According to the experimental results, the thermal curves extracted from the faces of testers show that it is relatively well accepted by blindfolded and even blind testers. With the prompt frequency of 1s, the painting navigation system performs best with the completion degree of 89% with SD of 8.37% and overflow degree of 347% with SD of 162.14%. Meanwhile, the excellent and good types of brush tip trajectory account for 74%, and the relative movement distance is 4.21 with SD of 2.51. This work demonstrates that it is practicable for the blind people to feel the world through the brush in their hands. In the future, we plan to deploy Angle's Eyes on the phone to make it more portable. The demo video of the proposed painting navigation system is available at: https://doi.org/10.6084/m9.figshare.9760004.v1.

Mingyu Yin, Li Sun, Qingli Li

View synthesis is usually done by an autoencoder, in which the encoder maps a source view image into a latent content code, and the decoder transforms it into a target view image according to the condition. However, the source contents are often not well kept in this setting, which leads to unnecessary changes during the view translation. Although adding skipped connections, like Unet, alleviates the problem, but it often causes the failure on the view conformity. This paper proposes a new architecture by performing the source-to-target deformation in an iterative way. Instead of simply incorporating the features from multiple layers of the encoder, we design soft and hard deformation modules, which warp the encoder features to the target view at different resolutions, and give results to the decoder to complement the details. Particularly, the current warping flow is not only used to align the feature of the same resolution, but also as an approximation to coarsely deform the high resolution feature. Then the residual flow is estimated and applied in the high resolution, so that the deformation is built up in the coarse-to-fine fashion. To better constrain the model, we synthesize a rough target view image based on the intermediate flows and their warped features. The extensive ablation studies and the final results on two different data sets show the effectiveness of the proposed model.

Chang Yao, Jingyu Tang, Menghan Hu et al.

Sturge-Weber syndrome (SWS) is a vascular malformation disease, and it may cause blindness if the patient's condition is severe. Clinical results show that SWS can be divided into two types based on the characteristics of scleral blood vessels. Therefore, how to accurately segment scleral blood vessels has become a significant problem in computer-aided diagnosis. In this research, we propose to continuously upsample the bottom layer's feature maps to preserve image details, and design a novel Claw UNet based on UNet for scleral blood vessel segmentation. Specifically, the residual structure is used to increase the number of network layers in the feature extraction stage to learn deeper features. In the decoding stage, by fusing the features of the encoding, upsampling, and decoding parts, Claw UNet can achieve effective segmentation in the fine-grained regions of scleral blood vessels. To effectively extract small blood vessels, we use the attention mechanism to calculate the attention coefficient of each position in images. Claw UNet outperforms other UNet-based networks on scleral blood vessel image dataset.

Yunlu Wang, Cheng Yang, Menghan Hu et al.

This paper presents an unobtrusive solution that can automatically identify deep breath when a person is walking past the global depth camera. Existing non-contact breath assessments achieve satisfactory results under restricted conditions when human body stays relatively still. When someone moves forward, the breath signals detected by depth camera are hidden within signals of trunk displacement and deformation, and the signal length is short due to the short stay time, posing great challenges for us to establish models. To overcome these challenges, multiple region of interests (ROIs) based signal extraction and selection method is proposed to automatically obtain the signal informative to breath from depth video. Subsequently, graph signal analysis (GSA) is adopted as a spatial-temporal filter to wipe the components unrelated to breath. Finally, a classifier for identifying deep breath is established based on the selected breath-informative signal. In validation experiments, the proposed approach outperforms the comparative methods with the accuracy, precision, recall and F1 of 75.5%, 76.2%, 75.0% and 75.2%, respectively. This system can be extended to public places to provide timely and ubiquitous help for those who may have or are going through physical or mental trouble.

Yuzhen Chen, Menghan Hu, Chunjun Hua et al.

Coronavirus Disease 2019 (COVID-19) has spread all over the world since it broke out massively in December 2019, which has caused a large loss to the whole world. Both the confirmed cases and death cases have reached a relatively frightening number. Syndrome coronaviruses 2 (SARS-CoV-2), the cause of COVID-19, can be transmitted by small respiratory droplets. To curb its spread at the source, wearing masks is a convenient and effective measure. In most cases, people use face masks in a high-frequent but short-time way. Aimed at solving the problem that we don't know which service stage of the mask belongs to, we propose a detection system based on the mobile phone. We first extract four features from the GLCMs of the face mask's micro-photos. Next, a three-result detection system is accomplished by using KNN algorithm. The results of validation experiments show that our system can reach a precision of 82.87% (standard deviation=8.5%) on the testing dataset. In future work, we plan to expand the detection objects to more mask types. This work demonstrates that the proposed mobile microscope system can be used as an assistant for face mask being used, which may play a positive role in fighting against COVID-19.

Mingyu Yin, Li Sun, Qingli Li

Novel view synthesis often needs the paired data from both the source and target views. This paper proposes a view translation model under cVAE-GAN framework without requiring the paired data. We design a conditional deformable module (CDM) which uses the view condition vectors as the filters to convolve the feature maps of the main branch in VAE. It generates several pairs of displacement maps to deform the features, like the 2D optical flows. The results are fed into the deformed feature based normalization module (DFNM), which scales and offsets the main branch feature, given its deformed one as the input from the side branch. Taking the advantage of the CDM and DFNM, the encoder outputs a view-irrelevant posterior, while the decoder takes the code drawn from it to synthesize the reconstructed and the viewtranslated images. To further ensure the disentanglement between the views and other factors, we add adversarial training on the code. The results and ablation studies on MultiPIE and 3D chair datasets validate the effectiveness of the framework in cVAE and the designed module.

Yunlu Wang, Menghan Hu, Qingli Li et al.

Research significance: The extended version of this paper has been accepted by IEEE Internet of Things journal (DOI: 10.1109/JIOT.2020.2991456), please cite the journal version. During the epidemic prevention and control period, our study can be helpful in prognosis, diagnosis and screening for the patients infected with COVID-19 (the novel coronavirus) based on breathing characteristics. According to the latest clinical research, the respiratory pattern of COVID-19 is different from the respiratory patterns of flu and the common cold. One significant symptom that occurs in the COVID-19 is Tachypnea. People infected with COVID-19 have more rapid respiration. Our study can be utilized to distinguish various respiratory patterns and our device can be preliminarily put to practical use. Demo videos of this method working in situations of one subject and two subjects can be downloaded online. Research details: Accurate detection of the unexpected abnormal respiratory pattern of people in a remote and unobtrusive manner has great significance. In this work, we innovatively capitalize on depth camera and deep learning to achieve this goal. The challenges in this task are twofold: the amount of real-world data is not enough for training to get the deep model; and the intra-class variation of different types of respiratory patterns is large and the outer-class variation is small. In this paper, considering the characteristics of actual respiratory signals, a novel and efficient Respiratory Simulation Model (RSM) is first proposed to fill the gap between the large amount of training data and scarce real-world data. The proposed deep model and the modeling ideas have the great potential to be extended to large scale applications such as public places, sleep scenario, and office environment.

Ziye Zhang, Li Sun, Zhilin Zheng et al.

This paper aims to disentangle the latent space in cVAE into the spatial structure and the style code, which are complementary to each other, with one of them $z_s$ being label relevant and the other $z_u$ irrelevant. The generator is built by a connected encoder-decoder and a label condition mapping network. Depending on whether the label is related with the spatial structure, the output $z_s$ from the condition mapping network is used either as a style code or a spatial structure code. The encoder provides the label irrelevant posterior from which $z_u$ is sampled. The decoder employs $z_s$ and $z_u$ in each layer by adaptive normalization like SPADE or AdaIN. Extensive experiments on two datasets with different types of labels show the effectiveness of our method.