K. Kärkkäinen

h-index10
2papers
879citations

2 Papers

2.6CVMay 12, 2021
Unsupervised Acute Intracranial Hemorrhage Segmentation with Mixture Models

Kimmo Kärkkäinen, Shayan Fazeli, Majid Sarrafzadeh

Intracranial hemorrhage occurs when blood vessels rupture or leak within the brain tissue or elsewhere inside the skull. It can be caused by physical trauma or by various medical conditions and in many cases leads to death. The treatment must be started as soon as possible, and therefore the hemorrhage should be diagnosed accurately and quickly. The diagnosis is usually performed by a radiologist who analyses a Computed Tomography (CT) scan containing a large number of cross-sectional images throughout the brain. Analysing each image manually can be very time-consuming, but automated techniques can help speed up the process. While much of the recent research has focused on solving this problem by using supervised machine learning algorithms, publicly-available training data remains scarce due to privacy concerns. This problem can be alleviated by unsupervised algorithms. In this paper, we propose a fully-unsupervised algorithm which is based on the mixture models. Our algorithm utilizes the fact that the properties of hemorrhage and healthy tissues follow different distributions, and therefore an appropriate formulation of these distributions allows us to separate them through an Expectation-Maximization process. In addition, our algorithm is able to adaptively determine the number of clusters such that all the hemorrhage regions can be found without including noisy voxels. We demonstrate the results of our algorithm on publicly-available datasets that contain all different hemorrhage types in various sizes and intensities, and our results are compared to earlier unsupervised and supervised algorithms. The results show that our algorithm can outperform the other algorithms with most hemorrhage types.

5.4LGMay 22, 2019Code
Generative Imputation and Stochastic Prediction

Mohammad Kachuee, Kimmo Karkkainen, Orpaz Goldstein et al.

In many machine learning applications, we are faced with incomplete datasets. In the literature, missing data imputation techniques have been mostly concerned with filling missing values. However, the existence of missing values is synonymous with uncertainties not only over the distribution of missing values but also over target class assignments that require careful consideration. In this paper, we propose a simple and effective method for imputing missing features and estimating the distribution of target assignments given incomplete data. In order to make imputations, we train a simple and effective generator network to generate imputations that a discriminator network is tasked to distinguish. Following this, a predictor network is trained using the imputed samples from the generator network to capture the classification uncertainties and make predictions accordingly. The proposed method is evaluated on CIFAR-10 and MNIST image datasets as well as five real-world tabular classification datasets, under different missingness rates and structures. Our experimental results show the effectiveness of the proposed method in generating imputations as well as providing estimates for the class uncertainties in a classification task when faced with missing values.