Yijie Zheng

Yijie Zheng, Bangjun Xiao, Lei Shi et al.

Multimodal large language models (MLLMs), such as GPT-4o, are garnering significant attention. During the exploration of MLLM training, we identified Modality Composition Incoherence, a phenomenon that the proportion of a certain modality varies dramatically across different examples. It exacerbates the challenges of addressing mini-batch imbalances, which lead to uneven GPU utilization between Data Parallel (DP) instances and severely degrades the efficiency and scalability of MLLM training, ultimately affecting training speed and hindering further research on MLLMs. To address these challenges, we introduce OrchMLLM, a comprehensive framework designed to mitigate the inefficiencies in MLLM training caused by Modality Composition Incoherence. First, we propose Batch Post-Balancing Dispatcher, a technique that efficiently eliminates mini-batch imbalances in sequential data. Additionally, we integrate MLLM Global Orchestrator into the training framework to orchestrate multimodal data and tackle the issues arising from Modality Composition Incoherence. We evaluate OrchMLLM across various MLLM sizes, demonstrating its efficiency and scalability. Experimental results reveal that OrchMLLM achieves a Model FLOPs Utilization (MFU) of $41.6\%$ when training an 84B MLLM with three modalities on $2560$ H100 GPUs, outperforming Megatron-LM by up to $3.1\times$ in throughput.

Yijie Zheng, Robert J. Kilpatrick, David B. Phillips et al.

Multimode optical fibres are hair-thin strands of glass that efficiently transport light. They promise next-generation medical endoscopes that provide unprecedented sub-cellular image resolution deep inside the body. However, confining light to such fibres means that images are inherently scrambled in transit. Conventionally, this scrambling has been compensated by pre-calibrating how a specific fibre scrambles light and solving a stationary linear matrix equation that represents a physical model of the fibre. However, as the technology develops towards real-world deployment, the unscrambling process must account for dynamic changes in the matrix representing the fibre's effect on light, due to factors such as movement and temperature shifts, and non-linearities resulting from the inaccessibility of the fibre tip when inside the body. Such complex, dynamic and nonlinear behaviour is well-suited to approximation by neural networks, but most leading image reconstruction networks rely on convolutional layers, which assume strong correlations between adjacent pixels, a strong inductive bias that is inappropriate for fibre matrices which may be expressed in a range of arbitrary coordinate representations with long-range correlations. We introduce a new concept that uses self-attention layers to dynamically transform the coordinate representations of varying fibre matrices to a basis that admits compact, low-dimensional representations suitable for further processing. We demonstrate the effectiveness of this approach on diverse fibre matrix datasets. We show our models significantly improve the sparsity of fibre bases in their transformed bases with a participation ratio, p, as a measure of sparsity, of between 0.01 and 0.11. Further, we show that these transformed representations admit reconstruction of the original matrices with < 10% reconstruction error, demonstrating the invertibility.

Yijie Zheng, Rafael Fuentes-Dominguez, Matt Clark et al.

Advances in artificial intelligence (AI) show great potential in revealing underlying information from phonon microscopy (high-frequency ultrasound) data to identify cancerous cells. However, this technology suffers from the 'batch effect' that comes from unavoidable technical variations between each experiment, creating confounding variables that the AI model may inadvertently learn. We therefore present a multi-task conditional neural network framework to simultaneously achieve inter-batch calibration, by removing confounding variables, and accurate cell classification of time-resolved phonon-derived signals. We validate our approach by training and validating on different experimental batches, achieving a balanced precision of 89.22% and an average cross-validated precision of 89.07% for classifying background, healthy and cancerous regions. Classification can be performed in 0.5 seconds with only simple prior batch information required for multiple batch corrections. Further, we extend our model to reconstruct denoised signals, enabling physical interpretation of salient features indicating disease state including sound velocity, sound attenuation and cell-adhesion to substrate.