Farshid Alambeigi

Siddhartha Kapuria, Mohammad Rafiee Javazm, Naruhiko Ikoma et al.

Colorectal cancer screening critically depends on colonoscopy, yet existing platforms offer limited support for systematically studying the coupled dynamics of operator control, instrument motion, and visual feedback. This gap restricts reproducible closed-loop research in robotic colonoscopy, medical imaging, and emerging vision-language-action (VLA) learning paradigms. To address this challenge, we present OpenRC, an open-source modular robotic colonoscopy framework that retrofits conventional scopes while preserving clinical workflow. The framework supports simultaneous recording of video, operator commands, actuation state, and distal tip pose. We experimentally validated motion consistency and quantified cross-modal latency across sensing streams. Using this platform, we collected a multimodal dataset comprising 1,894 teleoperated episodes ~19 hours across 10 structured task variations of routine navigation, failure events, and recovery behaviors. By unifying open hardware and an aligned multimodal dataset, OpenRC provides a reproducible foundation for research in multimodal robotic colonoscopy and surgical autonomy.

Nethra Venkatayogi, Ozdemir Can Kara, Jeff Bonyun et al.

In this study, to address the current high earlydetection miss rate of colorectal cancer (CRC) polyps, we explore the potentials of utilizing transfer learning and machine learning (ML) classifiers to precisely and sensitively classify the type of CRC polyps. Instead of using the common colonoscopic images, we applied three different ML algorithms on the 3D textural image outputs of a unique vision-based surface tactile sensor (VS-TS). To collect realistic textural images of CRC polyps for training the utilized ML classifiers and evaluating their performance, we first designed and additively manufactured 48 types of realistic polyp phantoms with different hardness, type, and textures. Next, the performance of the used three ML algorithms in classifying the type of fabricated polyps was quantitatively evaluated using various statistical metrics.

Siddhartha Kapuria, Tarunraj G. Mohanraj, Nethra Venkatayogi et al.

In this study, toward addressing the over-confident outputs of existing artificial intelligence-based colorectal cancer (CRC) polyp classification techniques, we propose a confidence-calibrated residual neural network. Utilizing a novel vision-based tactile sensing (VS-TS) system and unique CRC polyp phantoms, we demonstrate that traditional metrics such as accuracy and precision are not sufficient to encapsulate model performance for handling a sensitive CRC polyp diagnosis. To this end, we develop a residual neural network classifier and address its over-confident outputs for CRC polyps classification via the post-processing method of temperature scaling. To evaluate the proposed method, we introduce noise and blur to the obtained textural images of the VS-TS and test the model's reliability for non-ideal inputs through reliability diagrams and other statistical metrics.

Open-H-Embodiment Consortium, Nigel Nelson, Juo-Tung Chen et al.

Autonomous medical robots hold promise to improve patient outcomes, reduce provider workload, democratize access to care, and enable superhuman precision. However, autonomous medical robotics has been limited by a fundamental data problem: existing medical robotic datasets are small, single-embodiment, and rarely shared openly, restricting the development of foundation models that the field needs to advance. We introduce Open-H-Embodiment, the largest open dataset of medical robotic video with synchronized kinematics to date, spanning more than 49 institutions and multiple robotic platforms including the CMR Versius, Intuitive Surgical's da Vinci, da Vinci Research Kit (dVRK), Rob Surgical BiTrack, Virtual Incision's MIRA, Moon Surgical Maestro, and a variety of custom systems, spanning surgical manipulation, robotic ultrasound, and endoscopy procedures. We demonstrate the research enabled by this dataset through two foundation models. GR00T-H is the first open foundation vision-language-action model for medical robotics, which is the only evaluated model to achieve full end-to-end task completion on a structured suturing benchmark (25% of trials vs. 0% for all others) and achieves 64% average success across a 29-step ex vivo suturing sequence. We also train Cosmos-H-Surgical-Simulator, the first action-conditioned world model to enable multi-embodiment surgical simulation from a single checkpoint, spanning nine robotic platforms and supporting in silico policy evaluation and synthetic data generation for the medical domain. These results suggest that open, large-scale medical robot data collection can serve as critical infrastructure for the research community, enabling advances in robot learning, world modeling, and beyond.

Siddhartha Kapuria, Jeff Bonyun, Yash Kulkarni et al.

In this paper, to collectively address the existing limitations on endoscopic diagnosis of Advanced Gastric Cancer (AGC) Tumors, for the first time, we propose (i) utilization and evaluation of our recently developed Vision-based Tactile Sensor (VTS), and (ii) a complementary Machine Learning (ML) algorithm for classifying tumors using their textural features. Leveraging a seven DoF robotic manipulator and unique custom-designed and additively-manufactured realistic AGC tumor phantoms, we demonstrated the advantages of automated data collection using the VTS addressing the problem of data scarcity and biases encountered in traditional ML-based approaches. Our synthetic-data-trained ML model was successfully evaluated and compared with traditional ML models utilizing various statistical metrics even under mixed morphological characteristics and partial sensor contact.

Nethra Venkatayogi, Qin Hu, Ozdemir Can Kara et al.

In this study, with the goal of reducing the early detection miss rate of colorectal cancer (CRC) polyps, we propose utilizing a novel hyper-sensitive vision-based tactile sensor called HySenSe and a complementary and novel machine learning (ML) architecture that explores the potentials of utilizing dilated convolutions, the beneficial features of the ResNet architecture, and the transfer learning concept applied on a small dataset with the scale of hundreds of images. The proposed tactile sensor provides high-resolution 3D textural images of CRC polyps that will be used for their accurate classification via the proposed dilated residual network. To collect realistic surface patterns of CRC polyps for training the ML models and evaluating their performance, we first designed and additively manufactured 160 unique realistic polyp phantoms consisting of 4 different hardness. Next, the proposed architecture was compared with the state-of-the-art ML models (e.g., AlexNet and DenseNet) and proved to be superior in terms of performance and complexity.

Ozdemir Can Kara, Charles Everson, Farshid Alambeigi

In this paper, with the goal of quantifying the qualitative image outputs of a Vision-based Tactile Sensor (VTS), we present the design, fabrication, and characterization of a novel Quantitative Surface Tactile Sensor (called QS-TS). QS-TS directly estimates the sensor's gel layer deformation in real-time enabling safe and autonomous tactile manipulation and servoing of delicate objects using robotic manipulators. The core of the proposed sensor is the utilization of miniature 1.5 mm x 1.5 mm synthetic square markers with inner binary patterns and a broad black border, called ArUco Markers. Each ArUco marker can provide real-time camera pose estimation that, in our design, is used as a quantitative measure for obtaining deformation of the QS-TS gel layer. Moreover, thanks to the use of ArUco markers, we propose a unique fabrication procedure that mitigates various challenges associated with the fabrication of the existing marker-based VTSs and offers an intuitive and less-arduous method for the construction of the VTS. Remarkably, the proposed fabrication facilitates the integration and adherence of markers with the gel layer to robustly and reliably obtain a quantitative measure of deformation in real-time regardless of the orientation of ArUco Markers. The performance and efficacy of the proposed QS-TS in estimating the deformation of the sensor's gel layer were experimentally evaluated and verified. Results demonstrate the phenomenal performance of the QS-TS in estimating the deformation of the gel layer with a relative error of <5%.

Yash Kulkarni, Mobina Tavangarifard, Daniyal Maroufi et al.

This paper introduces a novel shape-sensing approach for Concentric Tube Steerable Drilling Robots (CT-SDRs) based on Optical Frequency Domain Reflectometry (OFDR). Unlike traditional FBG-based methods, OFDR enables continuous strain measurement along the entire fiber length with enhanced spatial resolution. In the proposed method, a Shape Sensing Assembly (SSA) is first fabricated by integrating a single OFDR fiber with a flat NiTi wire. The calibrated SSA is then routed through and housed within the internal channel of a flexible drilling instrument, which is guided by the pre-shaped NiTi tube of the CT-SDR. In this configuration, the drilling instrument serves as a protective sheath for the SSA during drilling, eliminating the need for integration or adhesion to the instrument surface that is typical of conventional optical sensor approaches. The performance of the proposed SSA, integrated within the cannulated CT-SDR, was thoroughly evaluated under free-bending conditions and during drilling along multiple J-shaped trajectories in synthetic Sawbones phantoms. Results demonstrate accurate and reliable shape-sensing capability, confirming the feasibility and robustness of this integration strategy.

Daniyal Maroufi, Omid Rezayof, Farshid Alambeigi

The Python robotics ecosystem faces a challenge: while many libraries exist for rigid body transformations, few are both lightweight and mathematically strict. This paper introduces SE3Kit, a lightweight Python library efficient operations on the Special Euclidean Group SE(3) and the Special Orthogonal Group SO(3). Unlike established frameworks that require heavy dependencies (e.g., SpatialMath, PyPose) or general tools that lack robotics-specific features (e.g., SciPy), SE3Kit targets the gap between these extremes. It is designed for embedded deployment, rapid prototyping, and education while providing rigorous mathematical implementation. It provides a pure-Python, NumPy-only implementation of Lie Group operations, without the overhead of deep learning or other visualization software.

Mobina Tavangarifard, Jonathan S. Kacines, Qiyu Li et al.

Continuum manipulators (CMs) are widely used in minimally invasive procedures due to their compliant structure and ability to navigate deep and confined anatomical environments. However, their distributed deformation makes force sensing, contact detection, localization, and force estimation challenging, particularly when interactions occur at unknown arc-length locations along the robot. To address this problem, we propose a cascade learning-based framework (CLF) for CMs instrumented with a single distributed Optical Frequency Domain Reflectometry (OFDR) fiber embedded along one side of the robot. The OFDR sensor provides dense strain measurements along the manipulator backbone, capturing strain perturbations caused by external interactions. The proposed CLF first detects contact using a Gradient Boosting classifier and then estimates contact location and interaction force magnitude using a CNN--FiLM model that predicts a spatial force distribution along the manipulator. Experimental validation on a sensorized tendon-driven CM in an obstructed environment demonstrates that a single distributed OFDR fiber provides sufficient information to jointly infer contact occurrence, location, and force in continuum manipulators.

Jihong Zhu, Andrea Cherubini, Claire Dune et al.

Deformable object manipulation (DOM) is an emerging research problem in robotics. The ability to manipulate deformable objects endows robots with higher autonomy and promises new applications in the industrial, services, and healthcare sectors. However, compared to rigid object manipulation, the manipulation of deformable objects is considerably more complex, and is still an open research problem. Addressing DOM challenges demand breakthroughs in almost all aspects of robotics, namely hardware design, sensing, (deformation) modeling, planning, and control. In this article, we review recent advances and highlight the main challenges when considering deformation in each sub-field. A particular focus of our paper lies in the discussions of these challenges and proposing future directions of research.

Farshid Alambeigi, Zerui Wang, Yun-Hui Liu et al.

This paper addresses the problem of controlling a continuum manipulator (CM) in free or obstructed environments with no prior knowledge about the deformation behavior of the CM and the stiffness and geometry of the interacting obstructed environment. We propose a versatile data-driven priori-model-independent (PMI) control framework, in which various control paradigms (e.g. CM's position or shape control) can be defined based on the provided feedback. This optimal iterative algorithm learns the deformation behavior of the CM in interaction with an unknown environment, in real time, and then accomplishes the defined control objective. To evaluate the scalability of the proposed framework, we integrated two different CMs, designed for medical applications, with the da Vinci Research Kit (dVRK). The performance and learning capability of the framework was investigated in 11 sets of experiments including PMI position and shape control in free and unknown obstructed environments as well as during manipulation of an unknown deformable object. We also evaluated the performance of our algorithm in an ex-vivo experiment with a lamb heart.The theoretical and experimental results demonstrate the adaptivity, versatility, and accuracy of the proposed framework and, therefore, its suitability for a variety of applications involving continuum manipulators.

Sahba Aghajani Pedram, Peter Walker Ferguson, Changyeob Shin et al.

In this paper, we present a synergic learning algorithm to address the task of indirect manipulation of an unknown deformable tissue. Tissue manipulation is a common yet challenging task in various surgical interventions, which makes it a good candidate for robotic automation. We propose using a linear approximate Q-learning method in which human knowledge contributes to selecting useful yet simple features of tissue manipulation while the algorithm learns to take optimal actions and accomplish the task. The algorithm is implemented and evaluated on a simulation using the OpenCV and CHAI3D libraries. Successful simulation results for four different configurations which are based on realistic tissue manipulation scenarios are presented. Results indicate that with a careful selection of relatively simple and intuitive features, the developed Q-learning algorithm can successfully learn an optimal policy without any prior knowledge of tissue dynamics or camera intrinsic/extrinsic calibration parameters.

Shahriar Sefati, Rachel Hegeman, Farshid Alambeigi et al.

Conventional shape sensing techniques using Fiber Bragg Grating (FBG) involve finding the curvature at discrete FBG active areas and integrating curvature over the length of the continuum dexterous manipulator (CDM) for tip position estimation (TPE). However, due to limited number of sensing locations and many geometrical assumptions, these methods are prone to large error propagation especially when the CDM undergoes large deflections. In this paper, we study the complications of using the conventional TPE methods that are dependent on sensor model and propose a new data-driven method that overcomes these challenges. The proposed method consists of a regression model that takes FBG wavelength raw data as input and directly estimates the CDM's tip position. This model is pre-operatively (off-line) trained on position information from optical trackers/cameras (as the ground truth) and it intra-operatively (on-line) estimates CDM tip position using only the FBG wavelength data. The method's performance is evaluated on a CDM developed for orthopedic applications, and the results are compared to conventional model-dependent methods during large deflection bendings. Mean absolute TPE error (and standard deviation) of 1.52 (0.67) mm and 0.11 (0.1) mm with maximum absolute errors of 3.63 mm and 0.62 mm for the conventional and the proposed data-driven techniques were obtained, respectively. These results demonstrate a significant out-performance of the proposed data-driven approach versus the conventional estimation technique.

Shahriar Sefati, Ryan Murphy, Farshid Alambeigi et al.

Tracking and controlling the shape of continuum dexterous manipulators (CDM) in constraint environments is a challenging task. The imposed constraints and interaction with unknown obstacles may conform the CDM's shape and therefore demands for shape sensing methods which do not rely on direct line of sight. To address these issues, we integrate a novel Fiber Bragg Grating (FBG) shape sensing unit into a CDM, reconstruct the shape in real-time, and develop an optimization-based control algorithm using FBG tip position feedback. The CDM is designed for less-invasive treatment of osteolysis (bone degradation). To evaluate the performance of the feedback control algorithm when the CDM interacts with obstacles, we perform a set of experiments similar to the real scenario of the CDM interaction with soft and hard lesions during the treatment of osteolysis. In addition, we propose methods for identification of the CDM collisions with soft or hard obstacles using the jacobian information. Results demonstrate successful control of the CDM tip based on the FBG feedback and indicate repeatability and robustness of the proposed method when interacting with unknown obstacles.

Farshid Alambeigi, Mahsan Bakhtiarinejad, Armina Azizi et al.

Internal fixation is a common orthopedic procedure in which a rigid screw is used to fix fragments of a fractured bone together and expedite the healing process. However, the rigidity of the screw, geometry of the fractured anatomy (e.g. femur and pelvis), and patient age can cause an array of complications during screw placement, such as improper fracture healing due to misalignment of the bone fragments, lengthy procedure time and subsequently high radiation exposure. To address these issues, we propose a minimally invasive robot-assisted procedure comprising of a continuum robot, called ortho-snake, together with a novel bendable medical screw (BMS) for fixating the fractures. We describe the implementation of a curved drilling technique and focus on the design, manufacturing, and evaluation of a novel BMS, which can passively morph into the drilled curved tunnels with various curvatures. We evaluate the performance and efficacy of the proposed BMS using both finite element simulations as well as experiments conducted on synthetic bone samples.

Shahriar Sefati, Farshid Alambeigi, Iulian Iordachita et al.

Fiber Bragg Grating (FBG) has shown great potential in shape and force sensing of continuum manipulators (CM) and biopsy needles. In the recent years, many researchers have studied different manufacturing and modeling techniques of FBG-based force and shape sensors for medical applications. These studies mainly focus on obtaining shape and force information in a static (or quasi-static) environment. In this paper, however, we study and evaluate dynamic environments where the FBG data is affected by vibration caused by a harmonic force e.g. a rotational debriding tool harmonically exciting the CM and the FBG-based shape sensor. In such situations, appropriate pre-processing of the FBG signal is necessary in order to infer correct information from the raw signal. We look at an example of such dynamic environments in the less invasive treatment of osteolysis by studying the FBG data both in time- and frequency-domain in presence of vibration due to a debriding tool rotating inside the lumen of the CM.

Farshid Alambeigi, Shahriar Sefati, Mehran Armand

We present a constrained motion control framework for a redundant surgical system designed for minimally invasive treatment of pelvic osteolysis. The framework comprises a kinematics model of a six Degrees-of-Freedom (DoF) robotic arm integrated with a one DoF continuum manipulator as well as a novel convex optimization redundancy resolution controller. To resolve the redundancy resolution problem, formulated as a constrained l2-regularized quadratic minimization, we study and evaluate the potential use of an optimally tuned alternating direction method of multipliers (ADMM) algorithm. To this end, we prove global convergence of the algorithm at linear rate and propose expressions for the involved parameters resulting in a fast convergence. Simulations on the robotic system verified our analytical derivations and showed the capability and robustness of the ADMM algorithm in constrained motion control of our redundant surgical system.