Amirafshar Moshtaghpour

Daniel Nicholls, Jack Wells, Alex W. Robinson et al.

Cryo Focused Ion-Beam Scanning Electron Microscopy (cryo FIB-SEM) enables three-dimensional and nanoscale imaging of biological specimens via a slice and view mechanism. The FIB-SEM experiments are, however, limited by a slow (typically, several hours) acquisition process and the high electron doses imposed on the beam sensitive specimen can cause damage. In this work, we present a compressive sensing variant of cryo FIB-SEM capable of reducing the operational electron dose and increasing speed. We propose two Targeted Sampling (TS) strategies that leverage the reconstructed image of the previous sample layer as a prior for designing the next subsampling mask. Our image recovery is based on a blind Bayesian dictionary learning approach, i.e., Beta Process Factor Analysis (BPFA). This method is experimentally viable due to our ultra-fast GPU-based implementation of BPFA. Simulations on artificial compressive FIB-SEM measurements validate the success of proposed methods: the operational electron dose can be reduced by up to 20 times. These methods have large implications for the cryo FIB-SEM community, in which the imaging of beam sensitive biological materials without beam damage is crucial.

Seyed Abolfazl Ghasemzadeh, Gabriel Van Zandycke, Maxime Istasse et al.

This paper presents a unified framework to (i) locate the ball, (ii) predict the pose, and (iii) segment the instance mask of players in team sports scenes. Those problems are of high interest in automated sports analytics, production, and broadcast. A common practice is to individually solve each problem by exploiting universal state-of-the-art models, \eg, Panoptic-DeepLab for player segmentation. In addition to the increased complexity resulting from the multiplication of single-task models, the use of the off-the-shelf models also impedes the performance due to the complexity and specificity of the team sports scenes, such as strong occlusion and motion blur. To circumvent those limitations, our paper proposes to train a single model that simultaneously predicts the ball and the player mask and pose by combining the part intensity fields and the spatial embeddings principles. Part intensity fields provide the ball and player location, as well as player joints location. Spatial embeddings are then exploited to associate player instance pixels to their respective player center, but also to group player joints into skeletons. We demonstrate the effectiveness of the proposed model on the DeepSport basketball dataset, achieving comparable performance to the SoA models addressing each individual task separately.

Amirafshar Moshtaghpour, José M. Bioucas-Dias, Laurent Jacques

Single Pixel (SP) imaging is now a reality in many applications, e.g., biomedical ultrathin endoscope and fluorescent spectroscopy. In this context, many schemes exist to improve the light throughput of these device, e.g., using structured illumination driven by compressive sensing theory. In this work, we consider the combination of SP imaging with Fourier Transform Interferometry (SP-FTI) to reach high-resolution HyperSpectral (HS) imaging, as desirable, e.g., in fluorescent spectroscopy. While this association is not new, we here focus on optimizing the spatial illumination, structured as Hadamard patterns, during the optical path progression. We follow a variable density sampling strategy for space-time coding of the light illumination, and show theoretically and numerically that this scheme allows us to reduce the number of measurements and light-exposure of the observed object compared to conventional compressive SP-FTI.

Amirafshar Moshtaghpour, José M. Bioucas-Dias, Laurent Jacques

This paper introduces a single-pixel HyperSpectral (HS) imaging framework based on Fourier Transform Interferometry (FTI). By combining a space-time coding of the light illumination with partial interferometric observations of a collimated light beam (observed by a single pixel), our system benefits from (i) reduced measurement rate and light-exposure of the observed object compared to common (Nyquist) FTI imagers, and (ii) high spectral resolution as desirable in, e.g., Fluorescence Spectroscopy (FS). From the principles of compressive sensing with multilevel sampling, our method leverages the sparsity "in level" of FS data, both in the spectral and the spatial domains. This allows us to optimize the space-time light coding using time-modulated Hadamard patterns. We confirm the effectiveness of our approach by a few numerical experiments.