Yihong Chen

Yihong Chen, Pushkar Mishra, Luca Franceschi et al. · meta-ai

Factorisation-based Models (FMs), such as DistMult, have enjoyed enduring success for Knowledge Graph Completion (KGC) tasks, often outperforming Graph Neural Networks (GNNs). However, unlike GNNs, FMs struggle to incorporate node features and generalise to unseen nodes in inductive settings. Our work bridges the gap between FMs and GNNs by proposing ReFactor GNNs. This new architecture draws upon both modelling paradigms, which previously were largely thought of as disjoint. Concretely, using a message-passing formalism, we show how FMs can be cast as GNNs by reformulating the gradient descent procedure as message-passing operations, which forms the basis of our ReFactor GNNs. Across a multitude of well-established KGC benchmarks, our ReFactor GNNs achieve comparable transductive performance to FMs, and state-of-the-art inductive performance while using an order of magnitude fewer parameters.

Kelly Marchisio, Patrick Lewis, Yihong Chen et al. · meta-ai

Prior work shows that it is possible to expand pretrained Masked Language Models (MLMs) to new languages by learning a new set of embeddings, while keeping the transformer body frozen. Despite learning a small subset of parameters, this approach is not compute-efficient, as training the new embeddings requires a full forward and backward pass over the entire model. We propose mini-model adaptation, a compute-efficient alternative that builds a shallow mini-model from a fraction of a large model's parameters. New language-specific embeddings can then be efficiently trained over the mini-model and plugged into the aligned large model for rapid cross-lingual transfer. We explore two approaches to learn mini-models: MiniJoint, which jointly pretrains the primary model and the mini-model using a single transformer with a secondary MLM head at a middle layer; and MiniPost, where we start from a regular pretrained model, build a mini-model by extracting and freezing a few layers, and learn a small number of parameters on top. Experiments on XNLI, MLQA and PAWS-X show that mini-model adaptation matches the performance of the standard approach using 2.3x less compute on average.

Hao Yang, Chen Shi, Yihong Chen et al.

3D object detection has achieved remarkable progress by taking point clouds as the only input. However, point clouds often suffer from incomplete geometric structures and the lack of semantic information, which makes detectors hard to accurately classify detected objects. In this work, we focus on how to effectively utilize object-level information from images to boost the performance of point-based 3D detector. We present DeMF, a simple yet effective method to fuse image information into point features. Given a set of point features and image feature maps, DeMF adaptively aggregates image features by taking the projected 2D location of the 3D point as reference. We evaluate our method on the challenging SUN RGB-D dataset, improving state-of-the-art results by a large margin (+2.1 mAP@0.25 and +2.3mAP@0.5). Code is available at https://github.com/haoy945/DeMF.

Yilun Kong, Jingqing Ruan, Yihong Chen et al.

Large Language Models (LLMs) have demonstrated proficiency in addressing tasks that necessitate a combination of task planning and the usage of external tools that require a blend of task planning and the utilization of external tools, such as APIs. However, real-world complex systems present three prevalent challenges concerning task planning and tool usage: (1) The real system usually has a vast array of APIs, so it is impossible to feed the descriptions of all APIs to the prompt of LLMs as the token length is limited; (2) the real system is designed for handling complex tasks, and the base LLMs can hardly plan a correct sub-task order and API-calling order for such tasks; (3) Similar semantics and functionalities among APIs in real systems create challenges for both LLMs and even humans in distinguishing between them. In response, this paper introduces a comprehensive framework aimed at enhancing the Task Planning and Tool Usage (TPTU) abilities of LLM-based agents operating within real-world systems. Our framework comprises three key components designed to address these challenges: (1) the API Retriever selects the most pertinent APIs for the user task among the extensive array available; (2) LLM Finetuner tunes a base LLM so that the finetuned LLM can be more capable for task planning and API calling; (3) the Demo Selector adaptively retrieves different demonstrations related to hard-to-distinguish APIs, which is further used for in-context learning to boost the final performance. We validate our methods using a real-world commercial system as well as an open-sourced academic dataset, and the outcomes clearly showcase the efficacy of each individual component as well as the integrated framework.

Yihong Chen, Kelly Marchisio, Roberta Raileanu et al.

Pretrained language models (PLMs) are today the primary model for natural language processing. Despite their impressive downstream performance, it can be difficult to apply PLMs to new languages, a barrier to making their capabilities universally accessible. While prior work has shown it possible to address this issue by learning a new embedding layer for the new language, doing so is both data and compute inefficient. We propose to use an active forgetting mechanism during pretraining, as a simple way of creating PLMs that can quickly adapt to new languages. Concretely, by resetting the embedding layer every K updates during pretraining, we encourage the PLM to improve its ability of learning new embeddings within a limited number of updates, similar to a meta-learning effect. Experiments with RoBERTa show that models pretrained with our forgetting mechanism not only demonstrate faster convergence during language adaptation but also outperform standard ones in a low-data regime, particularly for languages that are distant from English.

Dong Wang, Zhao Zhang, Ziwei Zhao et al.

This paper explores the point set representation for tubular structure extraction tasks. Compared with the traditional mask representation, the point set representation enjoys its flexibility and representation ability, which would not be restricted by the fixed grid as the mask. Inspired by this, we propose PointScatter, an alternative to the segmentation models for the tubular structure extraction task. PointScatter splits the image into scatter regions and parallelly predicts points for each scatter region. We further propose the greedy-based region-wise bipartite matching algorithm to train the network end-to-end and efficiently. We benchmark the PointScatter on four public tubular datasets, and the extensive experiments on tubular structure segmentation and centerline extraction task demonstrate the effectiveness of our approach. Code is available at https://github.com/zhangzhao2022/pointscatter.

Jingqing Ruan, Yihong Chen, Bin Zhang et al.

With recent advancements in natural language processing, Large Language Models (LLMs) have emerged as powerful tools for various real-world applications. Despite their prowess, the intrinsic generative abilities of LLMs may prove insufficient for handling complex tasks which necessitate a combination of task planning and the usage of external tools. In this paper, we first propose a structured framework tailored for LLM-based AI Agents and discuss the crucial capabilities necessary for tackling intricate problems. Within this framework, we design two distinct types of agents (i.e., one-step agent and sequential agent) to execute the inference process. Subsequently, we instantiate the framework using various LLMs and evaluate their Task Planning and Tool Usage (TPTU) abilities on typical tasks. By highlighting key findings and challenges, our goal is to provide a helpful resource for researchers and practitioners to leverage the power of LLMs in their AI applications. Our study emphasizes the substantial potential of these models, while also identifying areas that need more investigation and improvement.

Chunan Liu, Lilian Denzler, Yihong Chen et al.

Epitope identification is vital for antibody design yet challenging due to the inherent variability in antibodies. While many deep learning methods have been developed for general protein binding site prediction tasks, whether they work for epitope prediction remains an understudied research question. The challenge is also heightened by the lack of a consistent evaluation pipeline with sufficient dataset size and epitope diversity. We introduce a filtered antibody-antigen complex structure dataset, AsEP (Antibody-specific Epitope Prediction). AsEP is the largest of its kind and provides clustered epitope groups, allowing the community to develop and test novel epitope prediction methods and evaluate their generalisability. AsEP comes with an easy-to-use interface in Python and pre-built graph representations of each antibody-antigen complex while also supporting customizable embedding methods. Using this new dataset, we benchmark several representative general protein-binding site prediction methods and find that their performances fall short of expectations for epitope prediction. To address this, we propose a novel method, WALLE, which leverages both unstructured modeling from protein language models and structural modeling from graph neural networks. WALLE demonstrate up to 3-10X performance improvement over the baseline methods. Our empirical findings suggest that epitope prediction benefits from combining sequential features provided by language models with geometrical information from graph representations. This provides a guideline for future epitope prediction method design. In addition, we reformulate the task as bipartite link prediction, allowing convenient model performance attribution and interpretability. We open source our data and code at https://github.com/biochunan/AsEP-dataset.

Ziwei Zhao, Dong Wang, Yihong Chen et al.

Detecting mass in mammogram is significant due to the high occurrence and mortality of breast cancer. In mammogram mass detection, modeling pairwise lesion correspondence explicitly is particularly important. However, most of the existing methods build relatively coarse correspondence and have not utilized correspondence supervision. In this paper, we propose a new transformer-based framework CL-Net to learn lesion detection and pairwise correspondence in an end-to-end manner. In CL-Net, View-Interactive Lesion Detector is proposed to achieve dynamic interaction across candidates of cross views, while Lesion Linker employs the correspondence supervision to guide the interaction process more accurately. The combination of these two designs accomplishes precise understanding of pairwise lesion correspondence for mammograms. Experiments show that CL-Net yields state-of-the-art performance on the public DDSM dataset and our in-house dataset. Moreover, it outperforms previous methods by a large margin in low FPI regime.

Wanru Zhao, Yihong Chen, Yuzhi Tang et al.

Data curation is a critical yet under-explored area in large language model (LLM) training. Existing methods, such as data selection and mixing, operate in an offline paradigm, detaching themselves from training. This separation introduces engineering overhead and makes the curation brittle: the entire pipeline must be re-run under model/task shifts. Moreover, offline methods alter data size through hard filtering or resampling, often sacrificing data diversity and harming generalization. We propose to rethink data curation as an online reweighting problem, where sample importance is dynamically adjusted during training via loss weighting rather than static pre-processing. Specifically, we introduce ADAPT (Adaptive Data reweighting for Pretraining and FineTuning), a dynamic online framework that reweights training samples with adaptive per-sample learning rates guided by similarity-based quality signals, without changing the number of training samples. Unlike offline methods that enforce a static data distribution, ADAPT acts as an implicit curriculum learner, progressively shifting focus from coarse-grained patterns to fine-grained semantic distinctions as the model evolves. Experiments on both instruction tuning and large-scale pretraining show that ADAPT consistently outperforms offline selection/mixing and prior online methods, achieving stronger cross-benchmark generalization under equal FLOPs.

Jiayi Wang, Yao Lu, Maurice Weber et al.

High-resource languages such as English, enables the pretraining of high-quality large language models (LLMs). The same can not be said for most other languages as LLMs still underperform for non-English languages, likely due to a gap in the quality and diversity of the available multilingual pretraining corpora. In this work, we find that machine-translated texts from a single high-quality source language can contribute significantly to the pretraining quality of multilingual LLMs. We translate FineWeb-Edu, a high-quality English web dataset, into nine languages, resulting in a 1.7-trillion-token dataset, which we call TransWebEdu and pretrain a 1.3B-parameter model, TransWebLLM, from scratch on this dataset. Across nine non-English reasoning tasks, we show that TransWebLLM matches or outperforms state-of-the-art multilingual models trained using closed data, such as Llama3.2, Qwen2.5, and Gemma, despite using an order of magnitude less data. We demonstrate that adding less than 5% of TransWebEdu as domain-specific pretraining data sets a new state-of-the-art in Arabic, Italian, Indonesian, Swahili, and Welsh understanding and commonsense reasoning tasks. To promote reproducibility, we release our corpus, models, and training pipeline under Open Source Initiative-approved licenses.

Haochen Yuan, Yutong Wang, Yihong Chen et al.

Time series forecasting, particularly in few-shot learning scenarios, is challenging due to the limited availability of high-quality training data. To address this, we present a pilot study on using reinforcement learning (RL) for time series data augmentation. Our method, ReAugment, tackles three critical questions: which parts of the training set should be augmented, how the augmentation should be performed, and what advantages RL brings to the process. Specifically, our approach maintains a forecasting model zoo, and by measuring prediction diversity across the models, we identify samples with higher probabilities for overfitting and use them as the anchor points for augmentation. Leveraging RL, our method adaptively transforms the overfit-prone samples into new data that not only enhances training set diversity but also directs the augmented data to target regions where the forecasting models are prone to overfitting. We validate the effectiveness of ReAugment across a wide range of base models, showing its advantages in both standard time series forecasting and few-shot learning tasks.

Yihong Chen, Jiancheng Yang, Deniz Sayin Mercadier et al.

We present a novel approach to reconstruction of 3D cardiac motion from sparse intraoperative data. While existing methods can accurately reconstruct 3D organ geometries from full 3D volumetric imaging, they cannot be used during surgical interventions where usually limited observed data, such as a few 2D frames or 1D signals, is available in real-time. We propose a versatile framework for reconstructing 3D motion from such partial data. It discretizes the 3D space into a deformable tetrahedral grid with signed distance values, providing implicit unlimited resolution while maintaining explicit control over motion dynamics. Given an initial 3D model reconstructed from pre-operative full volumetric data, our system, equipped with an universal observation encoder, can reconstruct coherent 3D cardiac motion from full 3D volumes, a few 2D MRI slices or even 1D signals. Extensive experiments on cardiac intervention scenarios demonstrate our ability to generate plausible and anatomically consistent 3D motion reconstructions from various sparse real-time observations, highlighting its potential for multimodal cardiac imaging. Our code and model will be made available at https://github.com/Scalsol/MedTet.

Yihong Chen, Quanming Yao

Attention sinks and massive activations are recurring and closely related phenomena in Transformer models. Existing studies have largely focused on the forward pass, making it unclear whether their connection is direct or mediated by a training-time mechanism. We study this question from the perspective of backpropagation. Empirically and theoretically, we show that under causal mask, attention sinks can induce pronounced gradient concentration, which we term gradient sinks. Furthermore, in pre-norm architectures with RMSNorm, massive activations can be understood as an adaptive response to this localized gradient pressure during training. To test this hypothesis, we introduce V-scale, a modification that adjusts value-path backpropagated gradients. In pretrained V-scale models, attention sinks are preserved whereas massive activations are suppressed. These results support the interpretation that gradient sink is a key training-time mediator linking attention sinks and massive activations.

Yihong Chen, Zhen Fan, Shuai Dong et al.

Stereo image super-resolution (SR) refers to the reconstruction of a high-resolution (HR) image from a pair of low-resolution (LR) images as typically captured by a dual-camera device. To enhance the quality of SR images, most previous studies focused on increasing the number and size of feature maps and introducing complex and computationally intensive structures, resulting in models with high computational complexity. Here, we propose a simple yet efficient stereo image SR model called NAFRSSR, which is modified from the previous state-of-the-art model NAFSSR by introducing recursive connections and lightweighting the constituent modules. Our NAFRSSR model is composed of nonlinear activation free and group convolution-based blocks (NAFGCBlocks) and depth-separated stereo cross attention modules (DSSCAMs). The NAFGCBlock improves feature extraction and reduces number of parameters by removing the simple channel attention mechanism from NAFBlock and using group convolution. The DSSCAM enhances feature fusion and reduces number of parameters by replacing 1x1 pointwise convolution in SCAM with weight-shared 3x3 depthwise convolution. Besides, we propose to incorporate trainable edge detection operator into NAFRSSR to further improve the model performance. Four variants of NAFRSSR with different sizes, namely, NAFRSSR-Mobile (NAFRSSR-M), NAFRSSR-Tiny (NAFRSSR-T), NAFRSSR-Super (NAFRSSR-S) and NAFRSSR-Base (NAFRSSR-B) are designed, and they all exhibit fewer parameters, higher PSNR/SSIM, and faster speed than the previous state-of-the-art models. In particular, to the best of our knowledge, NAFRSSR-M is the lightest (0.28M parameters) and fastest (50 ms inference time) model achieving an average PSNR/SSIM as high as 24.657 dB/0.7622 on the benchmark datasets. Codes and models will be released at https://github.com/JNUChenYiHong/NAFRSSR.

Siyi Liu, Chen Gao, Yihong Chen et al.

The embedding-based representation learning is commonly used in deep learning recommendation models to map the raw sparse features to dense vectors. The traditional embedding manner that assigns a uniform size to all features has two issues. First, the numerous features inevitably lead to a gigantic embedding table that causes a high memory usage cost. Second, it is likely to cause the over-fitting problem for those features that do not require too large representation capacity. Existing works that try to address the problem always cause a significant drop in recommendation performance or suffers from the limitation of unaffordable training time cost. In this paper, we proposed a novel approach, named PEP (short for Plug-in Embedding Pruning), to reduce the size of the embedding table while avoiding the drop of recommendation accuracy. PEP prunes embedding parameter where the pruning threshold(s) can be adaptively learned from data. Therefore we can automatically obtain a mixed-dimension embedding-scheme by pruning redundant parameters for each feature. PEP is a general framework that can plug in various base recommendation models. Extensive experiments demonstrate it can efficiently cut down embedding parameters and boost the base model's performance. Specifically, it achieves strong recommendation performance while reducing 97-99% parameters. As for the computation cost, PEP only brings an additional 20-30% time cost compared with base models. Codes are available at https://github.com/ssui-liu/learnable-embed-sizes-for-RecSys.

Yihong Chen, Zheng Zhang, Yue Cao et al.

Verification and regression are two general methodologies for prediction in neural networks. Each has its own strengths: verification can be easier to infer accurately, and regression is more efficient and applicable to continuous target variables. Hence, it is often beneficial to carefully combine them to take advantage of their benefits. In this paper, we take this philosophy to improve state-of-the-art object detection, specifically by RepPoints. Though RepPoints provides high performance, we find that its heavy reliance on regression for object localization leaves room for improvement. We introduce verification tasks into the localization prediction of RepPoints, producing RepPoints v2, which provides consistent improvements of about 2.0 mAP over the original RepPoints on the COCO object detection benchmark using different backbones and training methods. RepPoints v2 also achieves 52.1 mAP on COCO \texttt{test-dev} by a single model. Moreover, we show that the proposed approach can more generally elevate other object detection frameworks as well as applications such as instance segmentation. The code is available at https://github.com/Scalsol/RepPointsV2.

Yihong Chen, Yue Cao, Han Hu et al.

How do humans recognize an object in a piece of video? Due to the deteriorated quality of single frame, it may be hard for people to identify an occluded object in this frame by just utilizing information within one image. We argue that there are two important cues for humans to recognize objects in videos: the global semantic information and the local localization information. Recently, plenty of methods adopt the self-attention mechanisms to enhance the features in key frame with either global semantic information or local localization information. In this paper we introduce memory enhanced global-local aggregation (MEGA) network, which is among the first trials that takes full consideration of both global and local information. Furthermore, empowered by a novel and carefully-designed Long Range Memory (LRM) module, our proposed MEGA could enable the key frame to get access to much more content than any previous methods. Enhanced by these two sources of information, our method achieves state-of-the-art performance on ImageNet VID dataset. Code is available at \url{https://github.com/Scalsol/mega.pytorch}.

Lin Zhu, Yihong Chen

The focus of WSDM cup 2019 is session-based sequential skip prediction, i.e. predicting whether users will skip tracks, given their immediately preceding interactions in their listening session. This paper provides the solution of our team \textbf{ekffar} to this challenge. We focus on recurrent-neural-network-based deep learning approaches which have previously been shown to perform well on session-based recommendation problems. We show that by choosing an appropriate recurrent architecture that properly accounts for the given information such as user interaction features and song metadata, a single neural network could achieve a Mean Average Accuracy (AA) score of 0.648 on the withheld test data. Meanwhile, by ensembling several variants of the core model, the overall recommendation accuracy can be improved even further. By using the proposed approach, our team was able to attain the 1st place in the competition. We have open-sourced our implementation at GitHub.

Wanru Zhao, Yihong Chen, Royson Lee et al.

Pre-trained large language models (LLMs) have become a cornerstone of modern natural language processing, with their capabilities extending across a wide range of applications and languages. However, the fine-tuning of multilingual LLMs, especially for low-resource languages, faces significant challenges arising from data-sharing restrictions (the physical border) and inherent linguistic differences (the linguistic border). These barriers hinder users of various languages, particularly those in low-resource regions, from fully benefiting from the advantages of LLMs. To address these challenges, we propose the Federated Prompt Tuning Paradigm for multilingual scenarios, which utilizes parameter-efficient fine-tuning while adhering to data sharing restrictions. We design a comprehensive set of experiments and analyze them using a novel notion of language distance to highlight the strengths of our paradigm: Even under computational constraints, our method not only improves data efficiency but also facilitates mutual enhancements across languages, particularly benefiting low-resource ones. Compared to traditional local cross-lingual transfer tuning methods, our approach achieves 6.9\% higher accuracy with improved data efficiency, and demonstrates greater stability and generalization. These findings underscore the potential of our approach to promote social equality and champion linguistic diversity, ensuring that no language is left behind.

William F. Shen, Xinchi Qiu, Meghdad Kurmanji et al.

The ability to selectively remove knowledge from LLMs is highly desirable. However, existing methods often struggle with balancing unlearning efficacy and retain model utility, and lack controllability at inference time to emulate base model behavior as if it had never seen the unlearned data. In this paper, we propose LUNAR, a novel unlearning method grounded in the Linear Representation Hypothesis and operates by redirecting the representations of unlearned data to activation regions that expresses its inability to answer. We show that contrastive features are not a prerequisite for effective activation redirection, and LUNAR achieves state-of-the-art unlearning performance and superior controllability. Specifically, LUNAR achieves between 2.9x and 11.7x improvement in the combined unlearning efficacy and model utility score (Deviation Score) across various base models and generates coherent, contextually appropriate responses post-unlearning. Moreover, LUNAR effectively reduces parameter updates to a single down-projection matrix, a novel design that significantly enhances efficiency by 20x and robustness. Finally, we demonstrate that LUNAR is robust to white-box adversarial attacks and versatile in real-world scenarios, including handling sequential unlearning requests.

Yihong Chen, Pascal Fua

Accurate cardiac anatomy modeling requires the model to be able to handle intricate interrelations among structures. In this paper, we propose VecHeart, a unified framework for holistic reconstruction and generation of four-chamber cardiac structures. To overcome the limitations of current feed-forward implicit methods, specifically their restriction to single-object modeling and their neglect of inter-part correlations, we introduce Hybrid Part Transformer, which leverages part-specific learnable queries and interleaved attention to capture complex inter-chamber dependencies. Furthermore, we propose Anatomical Completion Masking and Modality Alignment strategies, enabling the model to infer complete four-chamber structures from partial, sparse, or noisy observations, even when certain anatomical parts are entirely missing. VecHeart also seamlessly extends to 3D+t dynamic mesh sequence generation, demonstrating exceptional versatility. Experiments show that our method achieves state-of-the-art performance, maintaining high-fidelity reconstruction across diverse challenging scenarios. Code will be released.

Jiayi Wang, Yao Lu, Maurice Weber et al. · mila

English, as a very high-resource language, enables the pretraining of high-quality large language models (LLMs). The same cannot be said for most other languages, as leading LLMs still underperform for non-English languages, likely due to a gap in the quality and diversity of the available multilingual pretraining corpora. In this work, we find that machine-translated text from a single high-quality source language can contribute significantly to the pretraining of multilingual LLMs. We translate FineWeb-Edu, a high-quality English web dataset, into French, German, and Spanish, resulting in a final 300B-token dataset, which we call TransWeb-Edu, and pretrain a 1.3B-parameter model, CuatroLLM, from scratch on this dataset. Across five non-English reasoning tasks, we show that CuatroLLM matches or outperforms state-of-the-art multilingual models trained using closed data, such as Llama3.2 and Gemma2, despite using an order of magnitude less data, such as about 6% of the tokens used for Llama3.2's training. We further demonstrate that with additional domain-specific pretraining, amounting to less than 1% of TransWeb-Edu, CuatroLLM surpasses the state of the art in multilingual reasoning. To promote reproducibility, we release our corpus, models, and training pipeline under open licenses at hf.co/britllm/CuatroLLM.

Yihong Chen, Jiancheng Yang, Deniz Sayin Mercadier et al.

Reconstructing cardiac motion from CMR sequences is critical for diagnosis, prognosis, and intervention. Existing methods rely on complete CMR stacks to infer full heart motion, limiting their applicability during intervention when only sparse observations are available. We present TetHeart, the first end-to-end framework for unified 4D heart mesh recovery from both offline full-stack and intra-procedural sparse-slice observations. Our method leverages deformable tetrahedra to capture shape and motion in a coherent space shared across cardiac structures. Before a procedure, it initializes detailed, patient-specific heart meshes from high-quality full stacks, which can then be updated using whatever slices can be obtained in real-time, down to a single one during the procedure. TetHeart incorporates several key innovations: (i) an attentive slice-adaptive 2D-3D feature assembly mechanism that integrates information from arbitrary numbers of slices at any position; (ii) a distillation strategy to ensure accurate reconstruction under extreme sparsity; and (iii) a weakly supervised motion learning scheme requiring annotations only at keyframes, such as the end-diastolic and end-systolic phases. Trained and validated on three large public datasets and evaluated zero-shot on additional private interventional and public datasets without retraining, TetHeart achieves state-of-the-art accuracy and strong generalization in both pre- and intra-procedural settings.

Deniz Sayin Mercadier, Hieu Le, Yihong Chen et al.

Human organs are composed of interconnected substructures whose geometry and spatial relationships constrain one another. Yet, most deep-learning approaches treat these parts independently, producing anatomically implausible reconstructions. We introduce PrIntMesh, a template-based, topology-preserving framework that reconstructs organs as unified systems. Starting from a connected template, PrIntMesh jointly deforms all substructures to match patient-specific anatomy, while explicitly preserving internal boundaries and enforcing smooth, artifact-free surfaces. We demonstrate its effectiveness on the heart, hippocampus, and lungs, achieving high geometric accuracy, correct topology, and robust performance even with limited or noisy training data. Compared to voxel- and surface-based methods, PrIntMesh better reconstructs shared interfaces, maintains structural consistency, and provides a data-efficient solution suitable for clinical use.

Yihong Chen

The making of knowledge engines in natural language processing has been shaped by two seemingly distinct paradigms: one grounded in structure, the other driven by massively available unstructured data. The structured paradigm leverages predefined symbolic interactions, such as knowledge graphs, as priors and designs models to capture them. In contrast, the unstructured paradigm centers on scaling transformer architectures with increasingly vast data and model sizes, as seen in modern large language models. Despite their divergence, this thesis seeks to establish conceptual connections bridging these paradigms. Two complementary forces, structure and destructure, emerge across both paradigms: structure organizes seen symbolic interactions, while destructure, through periodic embedding resets, improves model plasticity and generalization to unseen scenarios. These connections form a new recipe for developing general knowledge engines that can support transparent, controllable, and adaptable intelligent systems.

Binwen Liu, Peiyu Xu, Quan Yuan et al.

We investigate in-context learning (ICL) through a meticulous experimental framework that systematically varies task complexity and model architecture. Extending beyond the linear regression baseline, we introduce Gaussian kernel regression and nonlinear dynamical system tasks, which emphasize temporal and recursive reasoning. We evaluate four distinct models: a GPT2-style Transformer, a Transformer with FlashAttention mechanism, a convolutional Hyena-based model, and the Mamba state-space model. Each model is trained from scratch on synthetic datasets and assessed for generalization during testing. Our findings highlight that model architecture significantly shapes ICL performance. The standard Transformer demonstrates robust performance across diverse tasks, while Mamba excels in temporally structured dynamics. Hyena effectively captures long-range dependencies but shows higher variance early in training, and FlashAttention offers computational efficiency but is more sensitive in low-data regimes. Further analysis uncovers locality-induced shortcuts in Gaussian kernel tasks, enhanced nonlinear separability through input range scaling, and the critical role of curriculum learning in mastering high-dimensional tasks.

Xinchi Qiu, William F. Shen, Yihong Chen et al.

While unlearning knowledge from large language models (LLMs) is receiving increasing attention, one important aspect remains unexplored. Existing approaches and benchmarks assume data points to-be-forgotten are independent, ignoring their inter-connectivity - a fundamental characteristic of real-world data structures. In this paper, we propose PISTOL, a method for compiling structural datasets. PISTOL leverages the inherently structured nature of contractual relationships, offering several key benefits. First, it enables insights into the impact of structural data on unlearning effectiveness. Second, it provides precise and concise ground truths for clearer evaluation. Third, its attribute generation does not require input from pre-trained LLMs, mitigating confounding risks. Leveraging datasets synthesized using PISTOL, we demonstrate how data inter-connectivity impacts LLM unlearning. Specifically, (a) in both the pre-trained and fine-tuned models, unlearning difficulty increases as data inter-connectivity grows, (b) there is a positive correlation between the density of the knowledge graph and unlearning difficulty, and (c) when the to-be-forgotten data is skewed towards one domain, balancing retaining performance across all domains is challenging.

Yihong Chen, Pasquale Minervini, Sebastian Riedel et al.

Learning good representations on multi-relational graphs is essential to knowledge base completion (KBC). In this paper, we propose a new self-supervised training objective for multi-relational graph representation learning, via simply incorporating relation prediction into the commonly used 1vsAll objective. The new training objective contains not only terms for predicting the subject and object of a given triple, but also a term for predicting the relation type. We analyse how this new objective impacts multi-relational learning in KBC: experiments on a variety of datasets and models show that relation prediction can significantly improve entity ranking, the most widely used evaluation task for KBC, yielding a 6.1% increase in MRR and 9.9% increase in Hits@1 on FB15k-237 as well as a 3.1% increase in MRR and 3.4% in Hits@1 on Aristo-v4. Moreover, we observe that the proposed objective is especially effective on highly multi-relational datasets, i.e. datasets with a large number of predicates, and generates better representations when larger embedding sizes are used.

Qian Liu, Yihong Chen, Bei Chen et al.

Despite the continuing efforts to improve the engagingness and consistency of chit-chat dialogue systems, the majority of current work simply focus on mimicking human-like responses, leaving understudied the aspects of modeling understanding between interlocutors. The research in cognitive science, instead, suggests that understanding is an essential signal for a high-quality chit-chat conversation. Motivated by this, we propose P^2 Bot, a transmitter-receiver based framework with the aim of explicitly modeling understanding. Specifically, P^2 Bot incorporates mutual persona perception to enhance the quality of personalized dialogue generation. Experiments on a large public dataset, Persona-Chat, demonstrate the effectiveness of our approach, with a considerable boost over the state-of-the-art baselines across both automatic metrics and human evaluations.

Yihong Chen, Bei Chen, Xiangnan He et al.

Recommendation models mainly deal with categorical variables, such as user/item ID and attributes. Besides the high-cardinality issue, the interactions among such categorical variables are usually long-tailed, with the head made up of highly frequent values and a long tail of rare ones. This phenomenon results in the data sparsity issue, making it essential to regularize the models to ensure generalization. The common practice is to employ grid search to manually tune regularization hyperparameters based on the validation data. However, it requires non-trivial efforts and large computation resources to search the whole candidate space; even so, it may not lead to the optimal choice, for which different parameters should have different regularization strengths. In this paper, we propose a hyperparameter optimization method, LambdaOpt, which automatically and adaptively enforces regularization during training. Specifically, it updates the regularization coefficients based on the performance of validation data. With LambdaOpt, the notorious tuning of regularization hyperparameters can be avoided; more importantly, it allows fine-grained regularization (i.e. each parameter can have an individualized regularization coefficient), leading to better generalized models. We show how to employ LambdaOpt on matrix factorization, a classical model that is representative of a large family of recommender models. Extensive experiments on two public benchmarks demonstrate the superiority of our method in boosting the performance of top-K recommendation.

Lin Zhu, Jiaxing Lu, Yihong Chen

By seeking the narrowest prediction intervals (PIs) that satisfy the specified coverage probability requirements, the recently proposed quality-based PI learning principle can extract high-quality PIs that better summarize the predictive certainty in regression tasks, and has been widely applied to solve many practical problems. Currently, the state-of-the-art quality-based PI estimation methods are based on deep neural networks or linear models. In this paper, we propose Highest Density Interval Regression Forest (HDI-Forest), a novel quality-based PI estimation method that is instead based on Random Forest. HDI-Forest does not require additional model training, and directly reuses the trees learned in a standard Random Forest model. By utilizing the special properties of Random Forest, HDI-Forest could efficiently and more directly optimize the PI quality metrics. Extensive experiments on benchmark datasets show that HDI-Forest significantly outperforms previous approaches, reducing the average PI width by over 20% while achieving the same or better coverage probability

Lin Zhu, Yihong Chen, Bowen He

As one of the most popular techniques for solving the ranking problem in information retrieval, Learning-to-rank (LETOR) has received a lot of attention both in academia and industry due to its importance in a wide variety of data mining applications. However, most of existing LETOR approaches choose to learn a single global ranking function to handle all queries, and ignore the substantial differences that exist between queries. In this paper, we propose a domain generalization strategy to tackle this problem. We propose Query-Invariant Listwise Context Modeling (QILCM), a novel neural architecture which eliminates the detrimental influence of inter-query variability by learning \textit{query-invariant} latent representations, such that the ranking system could generalize better to unseen queries. We evaluate our techniques on benchmark datasets, demonstrating that QILCM outperforms previous state-of-the-art approaches by a substantial margin.

Yihong Chen, Bei Chen, Xuguang Duan et al.

Almost all the knowledge empowered applications rely upon accurate knowledge, which has to be either collected manually with high cost, or extracted automatically with unignorable errors. In this paper, we study 20 Questions, an online interactive game where each question-response pair corresponds to a fact of the target entity, to acquire highly accurate knowledge effectively with nearly zero labor cost. Knowledge acquisition via 20 Questions predominantly presents two challenges to the intelligent agent playing games with human players. The first one is to seek enough information and identify the target entity with as few questions as possible, while the second one is to leverage the remaining questioning opportunities to acquire valuable knowledge effectively, both of which count on good questioning strategies. To address these challenges, we propose the Learning-to-Ask (LA) framework, within which the agent learns smart questioning strategies for information seeking and knowledge acquisition by means of deep reinforcement learning and generalized matrix factorization respectively. In addition, a Bayesian approach to represent knowledge is adopted to ensure robustness to noisy user responses. Simulating experiments on real data show that LA is able to equip the agent with effective questioning strategies, which result in high winning rates and rapid knowledge acquisition. Moreover, the questioning strategies for information seeking and knowledge acquisition boost the performance of each other, allowing the agent to start with a relatively small knowledge set and quickly improve its knowledge base in the absence of constant human supervision.