LGNov 4, 2022
MONAI: An open-source framework for deep learning in healthcareM. Jorge Cardoso, Wenqi Li, Richard Brown et al.
Artificial Intelligence (AI) is having a tremendous impact across most areas of science. Applications of AI in healthcare have the potential to improve our ability to detect, diagnose, prognose, and intervene on human disease. For AI models to be used clinically, they need to be made safe, reproducible and robust, and the underlying software framework must be aware of the particularities (e.g. geometry, physiology, physics) of medical data being processed. This work introduces MONAI, a freely available, community-supported, and consortium-led PyTorch-based framework for deep learning in healthcare. MONAI extends PyTorch to support medical data, with a particular focus on imaging, and provide purpose-specific AI model architectures, transformations and utilities that streamline the development and deployment of medical AI models. MONAI follows best practices for software-development, providing an easy-to-use, robust, well-documented, and well-tested software framework. MONAI preserves the simple, additive, and compositional approach of its underlying PyTorch libraries. MONAI is being used by and receiving contributions from research, clinical and industrial teams from around the world, who are pursuing applications spanning nearly every aspect of healthcare.
IVMay 18, 2023Code
DeepEdit: Deep Editable Learning for Interactive Segmentation of 3D Medical ImagesAndres Diaz-Pinto, Pritesh Mehta, Sachidanand Alle et al.
Automatic segmentation of medical images is a key step for diagnostic and interventional tasks. However, achieving this requires large amounts of annotated volumes, which can be tedious and time-consuming task for expert annotators. In this paper, we introduce DeepEdit, a deep learning-based method for volumetric medical image annotation, that allows automatic and semi-automatic segmentation, and click-based refinement. DeepEdit combines the power of two methods: a non-interactive (i.e. automatic segmentation using nnU-Net, UNET or UNETR) and an interactive segmentation method (i.e. DeepGrow), into a single deep learning model. It allows easy integration of uncertainty-based ranking strategies (i.e. aleatoric and epistemic uncertainty computation) and active learning. We propose and implement a method for training DeepEdit by using standard training combined with user interaction simulation. Once trained, DeepEdit allows clinicians to quickly segment their datasets by using the algorithm in auto segmentation mode or by providing clicks via a user interface (i.e. 3D Slicer, OHIF). We show the value of DeepEdit through evaluation on the PROSTATEx dataset for prostate/prostatic lesions and the Multi-Atlas Labeling Beyond the Cranial Vault (BTCV) dataset for abdominal CT segmentation, using state-of-the-art network architectures as baseline for comparison. DeepEdit could reduce the time and effort annotating 3D medical images compared to DeepGrow alone. Source code is available at https://github.com/Project-MONAI/MONAILabel
CRSep 6, 2021
A Novel Multimodal Biometric Authentication System using Machine Learning and BlockchainRichard Brown, Gueltoum Bendiab, Stavros Shiaeles et al.
Traditional authentication systems that rely on simple passwords, PIN numbers or tokens have many security issues, like easily guessed passwords, PIN numbers written on the back of cards, etc. Thus, biometric authentication methods that rely on physical and behavioural characteristics have been proposed as an alternative for those systems. In real-world applications, authentication systems that involve a single biometric faced many issues, especially lack of accuracy and noisy data, which boost the research community to create multibiometric systems that involve a variety of biometrics. Those systems provide better performance and higher accuracy compared to other authentication methods. However, most of them are inconvenient and requires complex interactions from the user. Thus, in this paper, we introduce a novel multimodal authentication system that relies on machine learning and blockchain, with the aim of providing a more secure, transparent, and convenient authentication mechanism. The proposed system combines four important biometrics, fingerprint, face, age, and gender. The supervised learning algorithm Decision Tree has been used to combine the results of the biometrics verification process and produce a confidence level related to the user. The initial experimental results show the efficiency and robustness of the proposed multimodal systems.
LGOct 5, 2020
Metadata-Based Detection of Child Sexual Abuse MaterialMayana Pereira, Rahul Dodhia, Hyrum Anderson et al.
Child Sexual Abuse Media (CSAM) is any visual record of a sexually-explicit activity involving minors. CSAM impacts victims differently from the actual abuse because the distribution never ends, and images are permanent. Machine learning-based solutions can help law enforcement quickly identify CSAM and block digital distribution. However, collecting CSAM imagery to train machine learning models has many ethical and legal constraints, creating a barrier to research development. With such restrictions in place, the development of CSAM machine learning detection systems based on file metadata uncovers several opportunities. Metadata is not a record of a crime, and it does not have legal restrictions. Therefore, investing in detection systems based on metadata can increase the rate of discovery of CSAM and help thousands of victims. We propose a framework for training and evaluating deployment-ready machine learning models for CSAM identification. Our framework provides guidelines to evaluate CSAM detection models against intelligent adversaries and models' performance with open data. We apply the proposed framework to the problem of CSAM detection based on file paths. In our experiments, the best-performing model is based on convolutional neural networks and achieves an accuracy of 0.97. Our evaluation shows that the CNN model is robust against offenders actively trying to evade detection by evaluating the model against adversarially modified data. Experiments with open datasets confirm that the model generalizes well and is deployment-ready.