Jesús Labarta

Ghazal Rahimi, Victor Lopez, Marc Clascà et al.

The increasing adoption of heterogeneous platforms that combine CPUs with accelerators such as GPUs in high-performance computing (HPC) introduces new challenges for performance analysis and optimization. Traditional efficiency metrics, such as those proposed by the Performance Optimization and Productivity (POP) Center of Excellence, were designed primarily for homogeneous CPU-based systems and therefore, do not capture the complex interactions between host and device resources. In this work, we extend the POP efficiency framework to heterogeneous architectures by introducing a new hierarchy of metrics that separately evaluate host and device efficiency. On the host side, we quantify the effectiveness of hybrid execution and offloading operations. On the device side, we propose a multiplicative hierarchy analogous to the host hierarchy and define its Parallel Efficiency branch. Beyond their definition and formulation, we present the implementation of these metrics in the TALP module of the DLB library. TALP is a lightweight monitoring library that provides measurements both post mortem and at runtime, with outputs available in textual and machine-readable formats. We validate the proposed framework through synthetic benchmarks and three production HPC applications, demonstrating how the metrics expose inefficiencies in offloading, load balance, and orchestration. Results show that the extended TALP metrics provide actionable insights to guide developers in optimizing heterogeneous HPC codes.

Federico Rossi, Marco Cococcioni, Roger Ferrer Ibàñez et al.

As recently demonstrated, Deep Neural Networks (DNN), usually trained using single precision IEEE 754 floating point numbers (binary32), can also work using lower precision. Therefore, 16-bit and 8-bit compressed format have attracted considerable attention. In this paper, we focused on two families of formats that have already achieved interesting results in compressing binary32 numbers in machine learning applications, without sensible degradation of the accuracy: bfloat and posit. Even if 16-bit and 8-bit bfloat/posit are routinely used for reducing the storage of the weights/biases of trained DNNs, the inference still often happens on the 32-bit FPU of the CPU (especially if GPUs are not available). In this paper we propose a way to decompress a tensor of bfloat/posits just before computations, i.e., after the compressed operands have been loaded within the vector registers of a vector capable CPU, in order to save bandwidth usage and increase cache efficiency. Finally, we show the architectural parameters and considerations under which this solution is advantageous with respect to the uncompressed one.

Ferran Parés, Anna Arias-Duart, Dario Garcia-Gasulla et al.

In the image classification task, the most common approach is to resize all images in a dataset to a unique shape, while reducing their precision to a size which facilitates experimentation at scale. This practice has benefits from a computational perspective, but it entails negative side-effects on performance due to loss of information and image deformation. In this work we introduce the MAMe dataset, an image classification dataset with remarkable high resolution and variable shape properties. The goal of MAMe is to provide a tool for studying the impact of such properties in image classification, while motivating research in the field. The MAMe dataset contains thousands of artworks from three different museums, and proposes a classification task consisting on differentiating between 29 mediums (i.e. materials and techniques) supervised by art experts. After reviewing the singularity of MAMe in the context of current image classification tasks, a thorough description of the task is provided, together with dataset statistics. Experiments are conducted to evaluate the impact of using high resolution images, variable shape inputs and both properties at the same time. Results illustrate the positive impact in performance when using high resolution images, while highlighting the lack of solutions to exploit variable shapes. An additional experiment exposes the distinctiveness between the MAMe dataset and the prototypical ImageNet dataset. Finally, the baselines are inspected using explainability methods and expert knowledge, to gain insights on the challenges that remain ahead.

Raquel Pérez-Arnal, Dario Garcia-Gasulla, David Torrents et al.

Finding tumour genetic markers is essential to biomedicine due to their relevance for cancer detection and therapy development. In this paper, we explore a recently released dataset of chromosome rearrangements in 2,586 cancer patients, where different sorts of alterations have been detected. Using a Random Forest classifier, we evaluate the relevance of several features (some directly available in the original data, some engineered by us) related to chromosome rearrangements. This evaluation results in a set of potential tumour genetic markers, some of which are validated in the bibliography, while others are potentially novel.

Ferran Parés, Dario Garcia-Gasulla, Harald Servat et al.

High-resolution and variable-shape images have not yet been properly addressed by the AI community. The approach of down-sampling data often used with convolutional neural networks is sub-optimal for many tasks, and has too many drawbacks to be considered a sustainable alternative. In sight of the increasing importance of problems that can benefit from exploiting high-resolution (HR) and variable-shape, and with the goal of promoting research in that direction, we introduce a new family of datasets (MetH). The four proposed problems include two image classification, one image regression and one super resolution task. Each of these datasets contains thousands of art pieces captured by HR and variable-shape images, labeled by experts at the Metropolitan Museum of Art. We perform an analysis, which shows how the proposed tasks go well beyond current public alternatives in both pixel size and aspect ratio variance. At the same time, the performance obtained by popular architectures on these tasks shows that there is ample room for improvement. To wrap up the relevance of the contribution we review the fields, both in AI and high-performance computing, that could benefit from the proposed challenges.

Victor Gimenez-Abalos, Armand Vilalta, Dario Garcia-Gasulla et al.

The purpose of feature extraction on convolutional neural networks is to reuse deep representations learnt for a pre-trained model to solve a new, potentially unrelated problem. However, raw feature extraction from all layers is unfeasible given the massive size of these networks. Recently, a supervised method using complexity reduction was proposed, resulting in significant improvements in performance for transfer learning tasks. This approach first computes the discriminative power of features, and then discretises them using thresholds computed for the task. In this paper, we analyse the behaviour of these thresholds, with the purpose of finding a methodology for their estimation. After a comprehensive study, we find a very strong correlation between problem size and threshold value, with coefficient of determination above 90%. These results allow us to propose a unified model for threshold estimation, with potential application to transfer learning tasks.

Raquel Pérez-Arnal, Armand Vilalta, Dario Garcia-Gasulla et al.

Measuring the distance between concepts is an important field of study of Natural Language Processing, as it can be used to improve tasks related to the interpretation of those same concepts. WordNet, which includes a wide variety of concepts associated with words (i.e., synsets), is often used as a source for computing those distances. In this paper, we explore a distance for WordNet synsets based on visual features, instead of lexical ones. For this purpose, we extract the graphic features generated within a deep convolutional neural networks trained with ImageNet and use those features to generate a representative of each synset. Based on those representatives, we define a distance measure of synsets, which complements the traditional lexical distances. Finally, we propose some experiments to evaluate its performance and compare it with the current state-of-the-art.

Armand Vilalta, Dario Garcia-Gasulla, Ferran Parés et al.

The current state-of-the-art for image annotation and image retrieval tasks is obtained through deep neural networks, which combine an image representation and a text representation into a shared embedding space. In this paper we evaluate the impact of using the Full-Network embedding in this setting, replacing the original image representation in a competitive multimodal embedding generation scheme. Unlike the one-layer image embeddings typically used by most approaches, the Full-Network embedding provides a multi-scale representation of images, which results in richer characterizations. To measure the influence of the Full-Network embedding, we evaluate its performance on three different datasets, and compare the results with the original multimodal embedding generation scheme when using a one-layer image embedding, and with the rest of the state-of-the-art. Results for image annotation and image retrieval tasks indicate that the Full-Network embedding is consistently superior to the one-layer embedding. These results motivate the integration of the Full-Network embedding on any multimodal embedding generation scheme, something feasible thanks to the flexibility of the approach.

Dario Garcia-Gasulla, Armand Vilalta, Ferran Parés et al.

Patterns stored within pre-trained deep neural networks compose large and powerful descriptive languages that can be used for many different purposes. Typically, deep network representations are implemented within vector embedding spaces, which enables the use of traditional machine learning algorithms on top of them. In this short paper we propose the construction of a graph embedding space instead, introducing a methodology to transform the knowledge coded within a deep convolutional network into a topological space (i.e. a network). We outline how such graph can hold data instances, data features, relations between instances and features, and relations among features. Finally, we introduce some preliminary experiments to illustrate how the resultant graph embedding space can be exploited through graph analytics algorithms.

Dario Garcia-Gasulla, Armand Vilalta, Ferran Parés et al.

Transfer learning for feature extraction can be used to exploit deep representations in contexts where there is very few training data, where there are limited computational resources, or when tuning the hyper-parameters needed for training is not an option. While previous contributions to feature extraction propose embeddings based on a single layer of the network, in this paper we propose a full-network embedding which successfully integrates convolutional and fully connected features, coming from all layers of a deep convolutional neural network. To do so, the embedding normalizes features in the context of the problem, and discretizes their values to reduce noise and regularize the embedding space. Significantly, this also reduces the computational cost of processing the resultant representations. The proposed method is shown to outperform single layer embeddings on several image classification tasks, while also being more robust to the choice of the pre-trained model used for obtaining the initial features. The performance gap in classification accuracy between thoroughly tuned solutions and the full-network embedding is also reduced, which makes of the proposed approach a competitive solution for a large set of applications.

Dario Garcia-Gasulla, Ferran Parés, Armand Vilalta et al.

Deep neural networks are representation learning techniques. During training, a deep net is capable of generating a descriptive language of unprecedented size and detail in machine learning. Extracting the descriptive language coded within a trained CNN model (in the case of image data), and reusing it for other purposes is a field of interest, as it provides access to the visual descriptors previously learnt by the CNN after processing millions of images, without requiring an expensive training phase. Contributions to this field (commonly known as feature representation transfer or transfer learning) have been purely empirical so far, extracting all CNN features from a single layer close to the output and testing their performance by feeding them to a classifier. This approach has provided consistent results, although its relevance is limited to classification tasks. In a completely different approach, in this paper we statistically measure the discriminative power of every single feature found within a deep CNN, when used for characterizing every class of 11 datasets. We seek to provide new insights into the behavior of CNN features, particularly the ones from convolutional layers, as this can be relevant for their application to knowledge representation and reasoning. Our results confirm that low and middle level features may behave differently to high level features, but only under certain conditions. We find that all CNN features can be used for knowledge representation purposes both by their presence or by their absence, doubling the information a single CNN feature may provide. We also study how much noise these features may include, and propose a thresholding approach to discard most of it. All these insights have a direct application to the generation of CNN embedding spaces.

Dario Garcia-Gasulla, Eduard Ayguadé, Jesús Labarta et al.

The hyperlink prediction task, that of proposing new links between webpages, can be used to improve search engines, expand the visibility of web pages, and increase the connectivity and navigability of the web. Hyperlink prediction is typically performed on webgraphs composed by thousands or millions of vertices, where on average each webpage contains less than fifty links. Algorithms processing graphs so large and sparse require to be both scalable and precise, a challenging combination. Similarity-based algorithms are among the most scalable solutions within the link prediction field, due to their parallel nature and computational simplicity. These algorithms independently explore the nearby topological features of every missing link from the graph in order to determine its likelihood. Unfortunately, the precision of similarity-based algorithms is limited, which has prevented their broad application so far. In this work we explore the performance of similarity-based algorithms for the particular problem of hyperlink prediction on large webgraphs, and propose a novel method which assumes the existence of hierarchical properties. We evaluate this new approach on several webgraphs and compare its performance with that of the current best similarity-based algorithms. Its remarkable performance leads us to argue on the applicability of the proposal, identifying several use cases of hyperlink prediction. We also describes the approach we took for the computation of large-scale graphs from the perspective of high-performance computing, providing details on the implementation and parallelization of code.

Dario Garcia-Gasulla, Eduard Ayguadé, Jesús Labarta et al.

Link prediction, the problem of identifying missing links among a set of inter-related data entities, is a popular field of research due to its application to graph-like domains. Producing consistent evaluations of the performance of the many link prediction algorithms being proposed can be challenging due to variable graph properties, such as size and density. In this paper we first discuss traditional data mining solutions which are applicable to link prediction evaluation, arguing about their capacity for producing faithful and useful evaluations. We also introduce an innovative modification to a traditional evaluation methodology with the goal of adapting it to the problem of evaluating link prediction algorithms when applied to large graphs, by tackling the problem of class imbalance. We empirically evaluate the proposed methodology and, building on these findings, make a case for its importance on the evaluation of large-scale graph processing.

D. Garcia-Gasulla, J. Béjar, U. Cortés et al.

Vector-space word representations obtained from neural network models have been shown to enable semantic operations based on vector arithmetic. In this paper, we explore the existence of similar information on vector representations of images. For that purpose we define a methodology to obtain large, sparse vector representations of image classes, and generate vectors through the state-of-the-art deep learning architecture GoogLeNet for 20K images obtained from ImageNet. We first evaluate the resultant vector-space semantics through its correlation with WordNet distances, and find vector distances to be strongly correlated with linguistic semantics. We then explore the location of images within the vector space, finding elements close in WordNet to be clustered together, regardless of significant visual variances (e.g. 118 dog types). More surprisingly, we find that the space unsupervisedly separates complex classes without prior knowledge (e.g. living things). Afterwards, we consider vector arithmetics. Although we are unable to obtain meaningful results on this regard, we discuss the various problem we encountered, and how we consider to solve them. Finally, we discuss the impact of our research for cognitive systems, focusing on the role of the architecture being used.