Jingyuan Hu

Jiaying Lu, Bo Pan, Jieyi Chen et al.

Recently, Large Language Model based Autonomous system(LLMAS) has gained great popularity for its potential to simulate complicated behaviors of human societies. One of its main challenges is to present and analyze the dynamic events evolution of LLMAS. In this work, we present a visualization approach to explore detailed statuses and agents' behavior within LLMAS. We propose a general pipeline that establishes a behavior structure from raw LLMAS execution events, leverages a behavior summarization algorithm to construct a hierarchical summary of the entire structure in terms of time sequence, and a cause trace method to mine the causal relationship between agent behaviors. We then develop AgentLens, a visual analysis system that leverages a hierarchical temporal visualization for illustrating the evolution of LLMAS, and supports users to interactively investigate details and causes of agents' behaviors. Two usage scenarios and a user study demonstrate the effectiveness and usability of our AgentLens.

Rong Ma, Xi Li, Jingyuan Hu et al.

Single-cell sequencing is revolutionizing biology by enabling detailed investigations of cell-state transitions. Many biological processes unfold along continuous trajectories, yet it remains challenging to extract smooth, low-dimensional representations from inherently noisy, high-dimensional single-cell data. Neighbor embedding (NE) algorithms, such as t-SNE and UMAP, are widely used to embed high-dimensional single-cell data into low dimensions. But they often introduce undesirable distortions, resulting in misleading interpretations. Existing evaluation methods for NE algorithms primarily focus on separating discrete cell types rather than capturing continuous cell-state transitions, while dynamic modeling approaches rely on strong assumptions about cellular processes and specialized data. To address these challenges, we build on the Predictability-Computability-Stability (PCS) framework for reliable and reproducible data-driven discoveries. First, we systematically evaluate popular NE algorithms through empirical analysis, simulation, and theory, and reveal their key shortcomings, such as artifacts and instability. We then introduce NESS, a principled and interpretable machine learning approach to improve NE representations by leveraging algorithmic stability and to enable robust inference of smooth biological structures. NESS offers useful concepts, quantitative stability metrics, and efficient computational workflows to uncover developmental trajectories and cell-state transitions in single-cell data. Finally, we apply NESS to six single-cell datasets, spanning pluripotent stem cell differentiation, organoid development, and multiple tissue-specific lineage trajectories. Across these diverse contexts, NESS consistently yields useful biological insights, such as identification of transitional and stable cell states and quantification of transcriptional dynamics during development.

Xiaowei Yuan, Jingyuan Hu, Xiaodan Zhang et al.

With the explosive growth of social media, opinionated postings with emojis have increased explosively. Many emojis are used to express emotions, attitudes, and opinions. Emoji representation learning can be helpful to improve the performance of emoji-related natural language processing tasks, especially in text sentiment analysis. However, most studies have only utilized the fixed descriptions provided by the Unicode Consortium without consideration of actual usage scenarios. As for the sentiment analysis task, many researchers ignore the emotional impact of the interaction between text and emojis. It results that the emotional semantics of emojis cannot be fully explored. In this work, we propose a method called EmoGraph2vec to learn emoji representations by constructing a co-occurrence graph network from social data and enriching the semantic information based on an external knowledge base EmojiNet to embed emoji nodes. Based on EmoGraph2vec model, we design a novel neural network to incorporate text and emoji information into sentiment analysis, which uses a hybrid-attention module combined with TextCNN-based classifier to improve performance. Experimental results show that the proposed model can outperform several baselines for sentiment analysis on benchmark datasets. Additionally, we conduct a series of ablation and comparison experiments to investigate the effectiveness and interpretability of our model.