Oliver Bause

Julia Werner, Julius Oexle, Oliver Bause et al.

The classification performance of deep neural networks relies strongly on access to large, accurately annotated datasets. In medical imaging, however, obtaining such datasets is particularly challenging since annotations must be provided by specialized physicians, which severely limits the pool of annotators. Furthermore, class boundaries can often be ambiguous or difficult to define which further complicates machine learning-based classification. In this paper, we want to address this problem and introduce a framework for mislabel detection in medical datasets. This is validated on the two largest, publicly available datasets for Video Capsule Endoscopy, an important imaging procedure for examining the gastrointestinal tract based on a video stream of lowresolution images. In addition, potentially mislabeled samples identified by our pipeline were reviewed and re-annotated by three experienced gastroenterologists. Our results show that the proposed framework successfully detects incorrectly labeled data and results in an improved anomaly detection performance after cleaning the datasets compared to current baselines.

Oliver Bause, Jörg Gammerdinger, Julia Werner

Video Capsule Endoscopy (VCE) is a promising method for improving the medical examination of the small intestine in the gastrointestinal tract. A key challenge is their limited size, resulting in a short battery lifetime which conflicts with high energy consumption for image capturing and transmission to an on-body device. Thus, we propose an image compression pipeline that substantially reduces the transmitted data while preserving diagnostic image quality. Furthermore, we exploit characteristics of the compression process to identify frames with low diagnostic value mainly caused by bubbles, without requiring additional image analysis. For low-visibility frames, a dynamic bubble-aware frame rate adaptation strategy reduces image acquisition and transmission during these phases while preserving sensitivity to potential anomalies. The proposed compression and frame rate adaptation are evaluated on a RISC-V platform using the Kvasir-Capsule and Galar datasets. The compression method achieves a compression ratio of 5.748 (82.6%) at a peak signal-to-noise ratio of 40.3 dB, indicating negligible loss of visual quality. The compression accomplished a mean energy reduction of the whole system by 20.58%. Additionally, the proposed bubble-aware frame rate adaptation reduced the energy consumption by up to 40%. These results demonstrate the potential of our method to increase the applicability of VCE.

Oliver Bause, Paul Palomero Bernardo, Oliver Bringmann

As machine learning applications continue to evolve, the demand for efficient hardware accelerators, specifically tailored for deep neural networks (DNNs), becomes increasingly vital. In this paper, we propose a configurable memory hierarchy framework tailored for per layer adaptive memory access patterns of DNNs. The hierarchy requests data on-demand from the off-chip memory to provide it to the accelerator's compute units. The objective is to strike an optimized balance between minimizing the required memory capacity and maintaining high accelerator performance. The framework is characterized by its configurability, allowing the creation of a tailored memory hierarchy with up to five levels. Furthermore, the framework incorporates an optional shift register as final level to increase the flexibility of the memory management process. A comprehensive loop-nest analysis of DNN layers shows that the framework can efficiently execute the access patterns of most loop unrolls. Synthesis results and a case study of the DNN accelerator UltraTrail indicate a possible reduction in chip area of up to 62.2% as smaller memory modules can be used. At the same time, the performance loss can be minimized to 2.4%.

Julia Werner, Oliver Bause, Julius Oexle et al.

Video capsule endoscopy has become increasingly important for investigating the small intestine within the gastrointestinal tract. However, a persistent challenge remains the short battery lifetime of such compact sensor edge devices. Integrating artificial intelligence can help overcome this limitation by enabling intelligent real-time decision-making, thereby reducing the energy consumption and prolonging the battery life. However, this remains challenging due to data sparsity and the limited resources of the device restricting the overall model size. In this work, we introduce a multi-task neural network that combines the functionalities of precise self-localization within the gastrointestinal tract with the ability to detect anomalies in the small intestine within a single model. Throughout the development process, we consistently restricted the total number of parameters to ensure the feasibility to deploy such model in a small capsule. We report the first multi-task results using the recently published Galar dataset, integrating established multi-task methods and Viterbi decoding for subsequent time-series analysis. This outperforms current single-task models and represents a significant advance in AI-based approaches in this field. Our model achieves an accuracy of 93.63% on the localization task and an accuracy of 87.48% on the anomaly detection task. The approach requires only 1 million parameters while surpassing the current baselines.

Oliver Bause, Julia Werner, Paul Palomero Bernardo et al.

For many real-world applications involving low-power sensor edge devices deep neural networks used for image classification might not be suitable. This is due to their typically large model size and require- ment of operations often exceeding the capabilities of such resource lim- ited devices. Furthermore, camera sensors usually capture images with a Bayer color filter applied, which are subsequently converted to RGB images that are commonly used for neural network training. However, on resource-constrained devices, such conversions demands their share of energy and optimally should be skipped if possible. This work ad- dresses the need for hardware-suitable AI targeting sensor edge devices by means of the Video Capsule Endoscopy, an important medical proce- dure for the investigation of the small intestine, which is strongly limited by its battery lifetime. Accurate organ classification is performed with a final accuracy of 93.06% evaluated directly on Bayer images involv- ing a CNN with only 63,000 parameters and time-series analysis in the form of Viterbi decoding. Finally, the process of capturing images with a camera and raw image processing is demonstrated with a customized PULPissimo System-on-Chip with a RISC-V core and an ultra-low power hardware accelerator providing an energy-efficient AI-based image clas- sification approach requiring just 5.31 μJ per image. As a result, it is possible to save an average of 89.9% of energy before entering the small intestine compared to classic video capsules.