Yixiao Chen

Wenfei Li, Qi Ou, Yixiao Chen et al.

Recently, the development of machine learning (ML) potentials has made it possible to perform large-scale and long-time molecular simulations with the accuracy of quantum mechanical (QM) models. However, for high-level QM methods, such as density functional theory (DFT) at the meta-GGA level and/or with exact exchange, quantum Monte Carlo, etc., generating a sufficient amount of data for training a ML potential has remained computationally challenging due to their high cost. In this work, we demonstrate that this issue can be largely alleviated with Deep Kohn-Sham (DeePKS), a ML-based DFT model. DeePKS employs a computationally efficient neural network-based functional model to construct a correction term added upon a cheap DFT model. Upon training, DeePKS offers closely-matched energies and forces compared with high-level QM method, but the number of training data required is orders of magnitude less than that required for training a reliable ML potential. As such, DeePKS can serve as a bridge between expensive QM models and ML potentials: one can generate a decent amount of high-accuracy QM data to train a DeePKS model, and then use the DeePKS model to label a much larger amount of configurations to train a ML potential. This scheme for periodic systems is implemented in a DFT package ABACUS, which is open-source and ready for use in various applications.

Yixiao Chen, Hao Xie, Han Wang

We propose a new algorithm for efficiently solving the damped Fisher matrix in large-scale scenarios where the number of parameters significantly exceeds the number of available samples. This problem is fundamental for natural gradient descent and stochastic reconfiguration. Our algorithm is based on Cholesky decomposition and is generally applicable. Benchmark results show that the algorithm is significantly faster than existing methods.

Wenhao Zheng, Yixiao Chen, Weitong Zhang et al.

Large language models have achieved remarkable success in various tasks but suffer from high computational costs during inference, limiting their deployment in resource-constrained applications. To address this issue, we propose a novel Collaborative Inference with Token-lEvel Routing (CITER) framework that enables efficient collaboration between small and large language models (SLMs \& LLMs) through a token-level routing strategy. Specifically, CITER routes non-critical tokens to an SLM for efficiency and routes critical tokens to an LLM for generalization quality. We formulate router training as a policy optimization, where the router receives rewards based on both the quality of predictions and the inference costs of generation. This allows the router to learn to predict token-level routing scores and make routing decisions based on both the current token and the future impact of its decisions. To further accelerate the reward evaluation process, we introduce a shortcut which significantly reduces the costs of the reward estimation and improving the practicality of our approach. Extensive experiments on five benchmark datasets demonstrate that CITER reduces the inference costs while preserving high-quality generation, offering a promising solution for real-time and resource-constrained applications. Our data and code are available at https://github.com/aiming-lab/CITER.

Ruichen Li, Yuzhi Liu, Du Jiang et al.

Spin plays a fundamental role in understanding electronic structure, yet many real-space wavefunction methods fail to adequately consider it. We introduce the Spin-Adapted Antisymmetrization Method (SAAM), a general procedure that enforces exact total spin symmetry for antisymmetric many-electron wavefunctions in real space. In the context of neural network-based quantum Monte Carlo (NNQMC), SAAM leverages the expressiveness of deep neural networks to capture electron correlation while enforcing exact spin adaptation via group representation theory. This framework provides a principled route to embed physical priors into otherwise black-box neural network wavefunctions, yielding a compact representation of correlated system with neural network orbitals. Compared with existing treatments of spin in NNQMC, SAAM is more accurate and efficient, achieving exact spin purity without any additional tunable hyperparameters. To demonstrate its effectiveness, we apply SAAM to study the spin ladder of iron-sulfur clusters, a long-standing challenge for many-body methods due to their dense spectrum of nearly degenerate spin states. Our results reveal accurate resolution of low-lying spin states and spin gaps in [Fe$_2$S$_2$] and [Fe$_4$S$_4$] clusters, offering new insights into their electronic structures. In sum, these findings establish SAAM as a robust, hyperparameter-free standard for spin-adapted NNQMC, particularly for strongly correlated systems.

Yixiao Chen, Shikun Sun, Jianshu Li et al.

Adversarial attacks are widely used to evaluate model robustness, and in black-box scenarios, the transferability of these attacks becomes crucial. Existing generator-based attacks have excellent generalization and transferability due to their instance-agnostic nature. However, when training generators for multi-target tasks, the success rate of transfer attacks is relatively low due to the limitations of the model's capacity. To address these challenges, we propose a novel Dual-Flow framework for multi-target instance-agnostic adversarial attacks, utilizing Cascading Distribution Shift Training to develop an adversarial velocity function. Extensive experiments demonstrate that Dual-Flow significantly improves transferability over previous multi-target generative attacks. For example, it increases the success rate from Inception-v3 to ResNet-152 by 34.58\%. Furthermore, our attack method shows substantially stronger robustness against defense mechanisms, such as adversarially trained models. The code of Dual-Flow is available at: $\href{https://github.com/Chyxx/Dual-Flow}{https://github.com/Chyxx/Dual-Flow}$.

Yixiao Chen, Yue Yao, Ruining Yang et al.

This article investigates the critical issue of dataset bias in medical imaging, with a particular emphasis on racial disparities caused by uneven population distribution in dataset collection. Our analysis reveals that medical segmentation datasets are significantly biased, primarily influenced by the demographic composition of their collection sites. For instance, Scanning Laser Ophthalmoscopy (SLO) fundus datasets collected in the United States predominantly feature images of White individuals, with minority racial groups underrepresented. This imbalance can result in biased model performance and inequitable clinical outcomes, particularly for minority populations. To address this challenge, we propose a novel training set search strategy aimed at reducing these biases by focusing on underrepresented racial groups. Our approach utilizes existing datasets and employs a simple greedy algorithm to identify source images that closely match the target domain distribution. By selecting training data that aligns more closely with the characteristics of minority populations, our strategy improves the accuracy of medical segmentation models on specific minorities, i.e., Black. Our experimental results demonstrate the effectiveness of this approach in mitigating bias. We also discuss the broader societal implications, highlighting how addressing these disparities can contribute to more equitable healthcare outcomes.

Yixiao Chen, Zhiyuan Ma, Guoli Jia et al.

Autoregressive transformers have recently shown impressive image generation quality and efficiency on par with state-of-the-art diffusion models. Unlike diffusion architectures, autoregressive models can naturally incorporate arbitrary modalities into a single, unified token sequence--offering a concise solution for multi-conditional image generation tasks. In this work, we propose $\textbf{ContextAR}$, a flexible and effective framework for multi-conditional image generation. ContextAR embeds diverse conditions (e.g., canny edges, depth maps, poses) directly into the token sequence, preserving modality-specific semantics. To maintain spatial alignment while enhancing discrimination among different condition types, we introduce hybrid positional encodings that fuse Rotary Position Embedding with Learnable Positional Embedding. We design Conditional Context-aware Attention to reduces computational complexity while preserving effective intra-condition perception. Without any fine-tuning, ContextAR supports arbitrary combinations of conditions during inference time. Experimental results demonstrate the powerful controllability and versatility of our approach, and show that the competitive perpormance than diffusion-based multi-conditional control approaches the existing autoregressive baseline across diverse multi-condition driven scenarios. Project page: $\href{https://context-ar.github.io/}{https://context-ar.github.io/.}$

Mengyuan Liu, Yixiao Chen, Anning Tian et al.

Convolutional neural networks like U-Net excel in medical image segmentation, while attention mechanisms and KAN enhance feature extraction. Meta's SAM 2 uses Vision Transformers for prompt-based segmentation without fine-tuning. However, biases in these models impact generalization with limited data. In this study, we systematically evaluate and compare the performance of three CNN-based models, i.e., U-Net, Attention U-Net, and U-KAN, and one transformer-based model, i.e., SAM 2 for segmenting femur bone structures in MRI scan. The dataset comprises 11,164 MRI scans with detailed annotations of femoral regions. Performance is assessed using the Dice Similarity Coefficient, which ranges from 0.932 to 0.954. Attention U-Net achieves the highest overall scores, while U-KAN demonstrated superior performance in anatomical regions with a smaller region of interest, leveraging its enhanced learning capacity to improve segmentation accuracy.

Yixiao Chen, Bin Liang, Hanzhi Guo et al.

Integrating inverse rendering with multi-view photometric stereo (MVPS) yields more accurate 3D reconstructions than the inverse rendering approaches that rely on fixed environment illumination. However, efficient inverse rendering with MVPS remains challenging. To fill this gap, we introduce the Gaussian Splatting for Multi-view Photometric Stereo (PS-GS), which efficiently and jointly estimates the geometry, materials, and lighting of the object that is illuminated by diverse directional lights (multi-light). Our method first reconstructs a standard 2D Gaussian splatting model as the initial geometry. Based on the initialization model, it then proceeds with the deferred inverse rendering by the full rendering equation containing a lighting-computing multi-layer perceptron. During the whole optimization, we regularize the rendered normal maps by the uncalibrated photometric stereo estimated normals. We also propose the 2D Gaussian ray-tracing for single directional light to refine the incident lighting. The regularizations and the use of multi-view and multi-light images mitigate the ill-posed problem of inverse rendering. After optimization, the reconstructed object can be used for novel-view synthesis, relighting, and material and shape editing. Experiments on both synthetic and real datasets demonstrate that our method outperforms prior works in terms of reconstruction accuracy and computational efficiency.

Yixiao Chen, Linfeng Zhang, Han Wang et al.

We propose a general machine learning-based framework for building an accurate and widely-applicable energy functional within the framework of generalized Kohn-Sham density functional theory. To this end, we develop a way of training self-consistent models that are capable of taking large datasets from different systems and different kinds of labels. We demonstrate that the functional that results from this training procedure gives chemically accurate predictions on energy, force, dipole, and electron density for a large class of molecules. It can be continuously improved when more and more data are available.

Leonardo Zepeda-Núñez, Yixiao Chen, Jiefu Zhang et al.

The recently developed Deep Potential [Phys. Rev. Lett. 120, 143001, 2018] is a powerful method to represent general inter-atomic potentials using deep neural networks. The success of Deep Potential rests on the proper treatment of locality and symmetry properties of each component of the network. In this paper, we leverage its network structure to effectively represent the mapping from the atomic configuration to the electron density in Kohn-Sham density function theory (KS-DFT). By directly targeting at the self-consistent electron density, we demonstrate that the adapted network architecture, called the Deep Density, can effectively represent the electron density as the linear combination of contributions from many local clusters. The network is constructed to satisfy the translation, rotation, and permutation symmetries, and is designed to be transferable to different system sizes. We demonstrate that using a relatively small number of training snapshots, Deep Density achieves excellent performance for one-dimensional insulating and metallic systems, as well as systems with mixed insulating and metallic characters. We also demonstrate its performance for real three-dimensional systems, including small organic molecules, as well as extended systems such as water (up to $512$ molecules) and aluminum (up to $256$ atoms).