Elnura Zhalieva

David Vallmanya Poch, Yorick Estievenart, Elnura Zhalieva et al.

Accurate dose calculations in proton therapy rely on high-quality CT images. While planning CTs (pCTs) serve as a reference for dosimetric planning, Cone Beam CT (CBCT) is used throughout Adaptive Radiotherapy (ART) to generate sCTs for improved dose calculations. Despite its lower cost and reduced radiation exposure advantages, CBCT suffers from severe artefacts and poor image quality, making it unsuitable for precise dosimetry. Deep learning-based CBCT-to-CT translation has emerged as a promising approach. Still, existing methods often introduce anatomical inconsistencies and lack reliable uncertainty estimates, limiting their clinical adoption. To bridge this gap, we propose STF-RUE, a novel framework integrating two key components. First, STF, a segmentation-guided CBCT-to-CT translation method that enhances anatomical consistency by leveraging segmentation priors extracted from pCTs. Second, RUE, a conformal prediction method that augments predicted CTs with pixel-wise conformal prediction intervals, providing clinicians with robust reliability indicator. Comprehensive experiments using UNet++ and Fast-DDPM on two benchmark datasets demonstrate that STF-RUE significantly improves translation accuracy, as measured by a novel soft-tissue-focused metric designed for precise dose computation. Additionally, STF-RUE provides better-calibrated uncertainty sets for synthetic CT, reinforcing trust in synthetic CTs. By addressing both anatomical fidelity and uncertainty quantification, STF-RUE marks a crucial step toward safer and more effective adaptive proton therapy. Code is available at https://anonymous.4open.science/r/cbct2ct_translation-B2D9/.

Naomi Desobry, Elnura Zhalieva, Souhaib Ben Taieb

Probabilistic models must be well calibrated to support reliable decision-making. While calibration in single-output regression is well studied, defining and achieving multivariate calibration in multi-output regression remains considerably more challenging. The existing literature on multivariate calibration primarily focuses on diagnostic tools based on pre-rank functions, which are projections that reduce multivariate prediction-observation pairs to univariate summaries to detect specific types of miscalibration. In this work, we go beyond diagnostics and introduce a general regularization framework to enforce multivariate calibration during training for arbitrary pre-rank functions. This framework encompasses existing approaches such as highest density region calibration and copula calibration. Our method enforces calibration by penalizing deviations of the projected probability integral transforms (PITs) from the uniform distribution, and can be added as a regularization term to the loss function of any probabilistic predictor. Specifically, we propose a regularization loss that jointly enforces both marginal and multivariate pre-rank calibration. We also introduce a new PCA-based pre-rank that captures calibration along directions of maximal variance in the predictive distribution, while also enabling dimensionality reduction. Across 18 real-world multi-output regression datasets, we show that unregularized models are consistently miscalibrated, and that our methods significantly improve calibration across all pre-rank functions without sacrificing predictive accuracy.

Abdelmajid Essofi, Ridwan Salahuddeen, Munachiso Nwadike et al.

The training or fine-tuning of machine learning, vision, and language models is often implemented as a pipeline: a sequence of stages encompassing data preparation, model training and evaluation. In this paper, we exploit pipeline structures to reduce the cost of hyperparameter tuning for model training/fine-tuning, which is particularly valuable for language models given their high costs in GPU-days. We propose a "memoization-aware" Bayesian Optimization (BO) algorithm, EEIPU, that works in tandem with a pipeline caching system, allowing it to evaluate significantly more hyperparameter candidates per GPU-day than other tuning algorithms. The result is better-quality hyperparameters in the same amount of search time, or equivalently, reduced search time to reach the same hyperparameter quality. In our benchmarks on machine learning (model ensembles), vision (convolutional architecture) and language (T5 architecture) pipelines, we compare EEIPU against recent BO algorithms: EEIPU produces an average of $103\%$ more hyperparameter candidates (within the same budget), and increases the validation metric by an average of $108\%$ more than other algorithms (where the increase is measured starting from the end of warm-up iterations).