Zhirong Huang

Junhao Wei, Baili Lu, Zhenhong Peng et al.

Sequence-based deep learning offers a scalable alternative to structure-based scoring for protein-ligand binding affinity prediction. However, progress is hard to interpret when architectural priors are evaluated on canonical PDBbind-style splits that leak similarity classes across folds. We present HonestAffinity, a compact 1D-input predictor to isolate two priors under a leak-aware protocol: frozen ESM-2 (650M) protein embeddings and a learned binary pocket-position marker. We evaluate a multi-scale convolutional/Transformer template in three variants: HonestAffinity-Pocket, HonestAffinity-NoPocket, and HonestAffinity-Pocket-NoESM. All three train on 11,513 LP-PDBBind complexes in ~3 GPU-hours. We benchmark against five baselines on the LP-PDBBind 3-tier no-leak hold-out, CASF-2016, and a CASF-2016 non-train subset. Our central finding is a split-conditioned reversal rather than a uniformly best prior: HonestAffinity-Pocket achieves the best mean Pearson R on validation and CASF-2016 splits, whereas HonestAffinity-Pocket-NoESM achieves the best mean Pearson R on every strict LP no-leak tier (test_cl1-cl3). Both the pocket marker and ESM-2 input improve performance on familiar splits but reduce Pearson R on strict no-leak tiers. We argue models should report paired canonical and leak-proof ablations, and that deployment-regime-matched variants better describe these reversals than a single default. Code and scripts are linked in the footnote; checkpoints will be released upon acceptance.

Daoguang Zan, Zhirong Huang, Ailun Yu et al.

GitHub issue resolving is a critical task in software engineering, recently gaining significant attention in both industry and academia. Within this task, SWE-bench has been released to evaluate issue resolving capabilities of large language models (LLMs), but has so far only focused on Python version. However, supporting more programming languages is also important, as there is a strong demand in industry. As a first step toward multilingual support, we have developed a Java version of SWE-bench, called SWE-bench-java. We have publicly released the dataset, along with the corresponding Docker-based evaluation environment and leaderboard, which will be continuously maintained and updated in the coming months. To verify the reliability of SWE-bench-java, we implement a classic method SWE-agent and test several powerful LLMs on it. As is well known, developing a high-quality multi-lingual benchmark is time-consuming and labor-intensive, so we welcome contributions through pull requests or collaboration to accelerate its iteration and refinement, paving the way for fully automated programming.

Zhirong Huang, Debo Cheng, Jiuyong Li et al.

It is often challenging to identify a valid instrumental variable (IV), although the IV methods have been regarded as effective tools of addressing the confounding bias introduced by latent variables. To deal with this issue, an Interaction-Data-guided Conditional IV (IDCIV) debiasing method is proposed for Recommender Systems, called IDCIV-RS. The IDCIV-RS automatically generates the representations of valid CIVs and their corresponding conditioning sets directly from interaction data, significantly reducing the complexity of IV selection while effectively mitigating the confounding bias caused by latent variables in recommender systems. Specifically, the IDCIV-RS leverages a variational autoencoder (VAE) to learn both the CIV representations and their conditioning sets from interaction data, followed by the application of least squares to derive causal representations for click prediction. Extensive experiments on two real-world datasets, Movielens-10M and Douban-Movie, demonstrate that IDCIV-RS successfully learns the representations of valid CIVs, effectively reduces bias, and consequently improves recommendation accuracy.

Daoguang Zan, Zhirong Huang, Wei Liu et al.

The task of issue resolving is to modify a codebase to generate a patch that addresses a given issue. However, existing benchmarks, such as SWE-bench, focus almost exclusively on Python, making them insufficient for evaluating Large Language Models (LLMs) across diverse software ecosystems. To address this, we introduce a multilingual issue-resolving benchmark, called Multi-SWE-bench, covering Java, TypeScript, JavaScript, Go, Rust, C, and C++. It includes a total of 1,632 high-quality instances, which were carefully annotated from 2,456 candidates by 68 expert annotators, ensuring that the benchmark can provide an accurate and reliable evaluation. Based on Multi-SWE-bench, we evaluate a series of state-of-the-art models using three representative methods (Agentless, SWE-agent, and OpenHands) and present a comprehensive analysis with key empirical insights. In addition, we launch a Multi-SWE-RL open-source community, aimed at building large-scale reinforcement learning (RL) training datasets for issue-resolving tasks. As an initial contribution, we release a set of 4,723 well-structured instances spanning seven programming languages, laying a solid foundation for RL research in this domain. More importantly, we open-source our entire data production pipeline, along with detailed tutorials, encouraging the open-source community to continuously contribute and expand the dataset. We envision our Multi-SWE-bench and the ever-growing Multi-SWE-RL community as catalysts for advancing RL toward its full potential, bringing us one step closer to the dawn of AGI.

Zhirong Huang, Shichao Zhang, Debo Cheng et al.

In recommender systems, popularity and conformity biases undermine recommender effectiveness by disproportionately favouring popular items, leading to their over-representation in recommendation lists and causing an unbalanced distribution of user-item historical data. We construct a causal graph to address both biases and describe the abstract data generation mechanism. Then, we use it as a guide to develop a novel Debiased Contrastive Learning framework for Mitigating Dual Biases, called DCLMDB. In DCLMDB, both popularity bias and conformity bias are handled in the model training process by contrastive learning to ensure that user choices and recommended items are not unduly influenced by conformity and popularity. Extensive experiments on two real-world datasets, Movielens-10M and Netflix, show that DCLMDB can effectively reduce the dual biases, as well as significantly enhance the accuracy and diversity of recommendations.

Lei Yu, Shiqi Chen, Hang Yuan et al.

With the rapid development of blockchain technology, smart contract security has become a critical challenge. Existing smart contract vulnerability detection methods face three main issues: (1) Insufficient quality of datasets, lacking detailed explanations and precise vulnerability locations. (2) Limited adaptability of large language models (LLMs) to the smart contract domain, as most LLMs are pre-trained on general text data but minimal smart contract-specific data. (3) Lack of high-quality explanations for detected vulnerabilities, as existing methods focus solely on detection without clear explanations. These limitations hinder detection performance and make it harder for developers to understand and fix vulnerabilities quickly, potentially leading to severe financial losses. To address these problems, we propose Smart-LLaMA, an advanced detection method based on the LLaMA language model. First, we construct a comprehensive dataset covering four vulnerability types with labels, detailed explanations, and precise vulnerability locations. Second, we introduce Smart Contract-Specific Continual Pre-Training, using raw smart contract data to enable the LLM to learn smart contract syntax and semantics, enhancing their domain adaptability. Furthermore, we propose Explanation-Guided Fine-Tuning, which fine-tunes the LLM using paired vulnerable code and explanations, enabling both vulnerability detection and reasoned explanations. We evaluate explanation quality through LLM and human evaluation, focusing on Correctness, Completeness, and Conciseness. Experimental results show that Smart-LLaMA outperforms state-of-the-art baselines, with average improvements of 6.49% in F1 score and 3.78% in accuracy, while providing reliable explanations.

Lei Yu, Zhirong Huang, Hang Yuan et al.

Smart contract vulnerability detection remains a major challenge in blockchain security. Existing vulnerability detection methods face two main issues: (1) Existing datasets lack comprehensive coverage and high-quality explanations for preference learning. (2) Large language models (LLMs) often struggle with accurately interpreting specific concepts in smart contract security. Empirical analysis shows that even after continual pre-training (CPT) and supervised fine-tuning (SFT), LLMs may misinterpret the execution order of state changes, resulting in incorrect explanations despite making correct detection decisions. To address these challenges, we propose Smart-LLaMA-DPO based on LLaMA-3.1-8B. We construct a comprehensive dataset covering four major vulnerability types and machine-unauditable vulnerabilities, including precise labels, explanations, and locations for SFT, as well as high-quality and low-quality output pairs for Direct Preference Optimization (DPO). Second, we perform CPT using large-scale smart contract to enhance the LLM's understanding of specific security practices in smart contracts. Futhermore, we conduct SFT with our comprehensive dataset. Finally, we apply DPO, leveraging human feedback and a specially designed loss function that increases the probability of preferred explanations while reducing the likelihood of non-preferred outputs. We evaluate Smart-LLaMA-DPO on four major vulnerability types: reentrancy, timestamp dependence, integer overflow/underflow, and delegatecall, as well as machine-unauditable vulnerabilities. Our method significantly outperforms state-of-the-art baselines, with average improvements of 10.43% in F1 score and 7.87% in accuracy. Moreover, both LLM evaluation and human evaluation confirm that our method generates more correct, thorough, and clear explanations.

Linhao Zhang, Daoguang Zan, Quanshun Yang et al.

Large Language Models (LLMs) have advanced rapidly in recent years, with their applications in software engineering expanding to more complex repository-level tasks. GitHub issue resolving is a key challenge among these tasks. While recent approaches have made progress on this task, they focus on textual data within issues, neglecting visual data. However, this visual data is crucial for resolving issues as it conveys additional knowledge that text alone cannot. We propose CodeV, the first approach to leveraging visual data to enhance the issue-resolving capabilities of LLMs. CodeV resolves each issue by following a two-phase process: data processing and patch generation. To evaluate CodeV, we construct a benchmark for visual issue resolving, namely Visual SWE-bench. Through extensive experiments, we demonstrate the effectiveness of CodeV, as well as provide valuable insights into leveraging visual data to resolve GitHub issues.

Lei Yu, Shiqi Cheng, Zhirong Huang et al.

With the increasing security issues in blockchain, smart contract vulnerability detection has become a research focus. Existing vulnerability detection methods have their limitations: 1) Static analysis methods struggle with complex scenarios. 2) Methods based on specialized pre-trained models perform well on specific datasets but have limited generalization capabilities. In contrast, general-purpose Large Language Models (LLMs) demonstrate impressive ability in adapting to new vulnerability patterns. However, they often underperform on specific vulnerability types compared to methods based on specialized pre-trained models. We also observe that explanations generated by general-purpose LLMs can provide fine-grained code understanding information, contributing to improved detection performance. Inspired by these observations, we propose SAEL, an LLM-based framework for smart contract vulnerability detection. We first design targeted prompts to guide LLMs in identifying vulnerabilities and generating explanations, which serve as prediction features. Next, we apply prompt-tuning on CodeT5 and T5 to process contract code and explanations, enhancing task-specific performance. To combine the strengths of each approach, we introduce an Adaptive Mixture-of-Experts architecture. This dynamically adjusts feature weights via a Gating Network, which selects relevant features using TopK filtering and Softmax normalization, and incorporates a Multi-Head Self-Attention mechanism to enhance cross-feature relationships. This design enables effective integration of LLM predictions, explanation features, and code features through gradient optimization. The loss function jointly considers both independent feature performance and overall weighted predictions. Experiments show that SAEL outperforms existing methods across various vulnerabilities.