Silke Henkes

2papers

2 Papers

SOFTApr 5, 2023
Graph-informed simulation-based inference for models of active matter

Namid R. Stillman, Silke Henkes, Roberto Mayor et al.

Many collective systems exist in nature far from equilibrium, ranging from cellular sheets up to flocks of birds. These systems reflect a form of active matter, whereby individual material components have internal energy. Under specific parameter regimes, these active systems undergo phase transitions whereby small fluctuations of single components can lead to global changes to the rheology of the system. Simulations and methods from statistical physics are typically used to understand and predict these phase transitions for real-world observations. In this work, we demonstrate that simulation-based inference can be used to robustly infer active matter parameters from system observations. Moreover, we demonstrate that a small number (from one to three) snapshots of the system can be used for parameter inference and that this graph-informed approach outperforms typical metrics such as the average velocity or mean square displacement of the system. Our work highlights that high-level system information is contained within the relational structure of a collective system and that this can be exploited to better couple models to data.

AOFeb 11, 2016
Self-Organized Hydrodynamics with nonconstant velocity

Pierre Degond, Silke Henkes, Hui Yu

Motivated by recent experimental and computational results that show a motility-induced clustering transition in self-propelled particle systems, we study an individual model and its corresponding Self-Organized Hydrodynamic model for collective behaviour that incorporates a density-dependent velocity, as well as inter-particle alignment. The modal analysis of the hydrodynamic model elucidates the relationship between the stability of the equilibria and the changing velocity, and the formation of clusters. We find, in agreement with earlier results for non-aligning particles, that the key criterion for stability is $(ρv(ρ))'> 0$, i.e. a non-rapid decrease of velocity with density. Numerical simulation for both the individual and hydrodynamic models with a velocity function inspired by experiment demonstrates the validity of the theoretical results.