Siwon Kim

Seonwoo Min, Nokyung Park, Siwon Kim et al.

Reducing the representational discrepancy between source and target domains is a key component to maximize the model generalization. In this work, we advocate for leveraging natural language supervision for the domain generalization task. We introduce two modules to ground visual representations with texts containing typical reasoning of humans: (1) Visual and Textual Joint Embedder and (2) Textual Explanation Generator. The former learns the image-text joint embedding space where we can ground high-level class-discriminative information into the model. The latter leverages an explainable model and generates explanations justifying the rationale behind its decision. To the best of our knowledge, this is the first work to leverage the vision-and-language cross-modality approach for the domain generalization task. Our experiments with a newly created CUB-DG benchmark dataset demonstrate that cross-modality supervision can be successfully used to ground domain-invariant visual representations and improve the model generalization. Furthermore, in the large-scale DomainBed benchmark, our proposed method achieves state-of-the-art results and ranks 1st in average performance for five multi-domain datasets. The dataset and codes are available at https://github.com/mswzeus/GVRT.

Seonwoo Min, Seunghyun Park, Siwon Kim et al.

Bridging the exponentially growing gap between the numbers of unlabeled and labeled protein sequences, several studies adopted semi-supervised learning for protein sequence modeling. In these studies, models were pre-trained with a substantial amount of unlabeled data, and the representations were transferred to various downstream tasks. Most pre-training methods solely rely on language modeling and often exhibit limited performance. In this paper, we introduce a novel pre-training scheme called PLUS, which stands for Protein sequence representations Learned Using Structural information. PLUS consists of masked language modeling and a complementary protein-specific pre-training task, namely same-family prediction. PLUS can be used to pre-train various model architectures. In this work, we use PLUS to pre-train a bidirectional recurrent neural network and refer to the resulting model as PLUS-RNN. Our experiment results demonstrate that PLUS-RNN outperforms other models of similar size solely pre-trained with the language modeling in six out of seven widely used protein biology tasks. Furthermore, we present the results from our qualitative interpretation analyses to illustrate the strengths of PLUS-RNN. PLUS provides a novel way to exploit evolutionary relationships among unlabeled proteins and is broadly applicable across a variety of protein biology tasks. We expect that the gap between the numbers of unlabeled and labeled proteins will continue to grow exponentially, and the proposed pre-training method will play a larger role.