Jeffrey Soar

Elias Hossain, Rajib Rana, Niall Higgins et al.

Background: Natural Language Processing (NLP) is widely used to extract clinical insights from Electronic Health Records (EHRs). However, the lack of annotated data, automated tools, and other challenges hinder the full utilisation of NLP for EHRs. Various Machine Learning (ML), Deep Learning (DL) and NLP techniques are studied and compared to understand the limitations and opportunities in this space comprehensively. Methodology: After screening 261 articles from 11 databases, we included 127 papers for full-text review covering seven categories of articles: 1) medical note classification, 2) clinical entity recognition, 3) text summarisation, 4) deep learning (DL) and transfer learning architecture, 5) information extraction, 6) Medical language translation and 7) other NLP applications. This study follows the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) guidelines. Result and Discussion: EHR was the most commonly used data type among the selected articles, and the datasets were primarily unstructured. Various ML and DL methods were used, with prediction or classification being the most common application of ML or DL. The most common use cases were: the International Classification of Diseases, Ninth Revision (ICD-9) classification, clinical note analysis, and named entity recognition (NER) for clinical descriptions and research on psychiatric disorders. Conclusion: We find that the adopted ML models were not adequately assessed. In addition, the data imbalance problem is quite important, yet we must find techniques to address this underlining problem. Future studies should address key limitations in studies, primarily identifying Lupus Nephritis, Suicide Attempts, perinatal self-harmed and ICD-9 classification.

Aakash Ahmad, Madhushi Bandara, Mahdi Fahmideh et al.

The outbreak of the SARS-CoV-2 pandemic of the new COVID-19 disease (COVID-19 for short) demands empowering existing medical, economic, and social emergency backend systems with data analytics capabilities. An impediment in taking advantages of data analytics in these systems is the lack of a unified framework or reference model. Ontologies are highlighted as a promising solution to bridge this gap by providing a formal representation of COVID-19 concepts such as symptoms, infections rate, contact tracing, and drug modelling. Ontology-based solutions enable the integration of diverse data sources that leads to a better understanding of pandemic data, management of smart lockdowns by identifying pandemic hotspots, and knowledge-driven inference, reasoning, and recommendations to tackle surrounding issues.

Lili Sun, Jianming Yong, Jeffrey Soar

Semantic web technologies represent much richer forms of relationships among users, resources and actions among different web applications such as clouding computing. However, Semantic web applications pose new requirements for security mechanisms especially in the access control models. This paper addresses existing access control methods and presents a semantic based access control model which considers semantic relations among different entities in cloud computing environment. We have enriched the research for semantic web technology with role-based access control that is able to be applied in the field of medical information system or e-Healthcare system. This work shows how the semantic web technology provides efficient solutions for the management of complex and distributed data in heterogeneous systems, and it can be used in the medical information systems as well.

Rajib Rana, Margee Hume, John Reilly et al.

Opportunistic affect sensing offers unprecedented potential for capturing spontaneous affect ubiquitously, obviating biases inherent in the laboratory setting. Facial expression and voice are two major affective displays, however most affect sensing systems on smartphone avoid them due to extensive power requirement. Encouragingly, due to the recent advent of low-power DSP (Digital Signal Processing) co-processor and GPU (Graphics Processing Unit) technology, audio and video sensing are becoming more feasible. To properly evaluate opportunistically captured facial expression and voice, contextual information about the dynamic audio-visual stimuli needs to be inferred. This paper discusses recent advances of affect sensing on the smartphone and identifies the key barriers and potential solutions of implementing opportunistic and context-aware affect sensing on smartphone platforms.

Rajib Rana, John Reilly, Raja Jurdak et al.

Due to increasing sensing capacity, smartphones offer unprecedented opportunity to monitor human health. Affect sensing is one such essential monitoring that can be achieved on smartphones. Information about affect can be useful for many modern applications. In particular, it can be potentially used for understanding cognitive decline in aging population. In this paper we present an overview of the existing literature that offer affect sensing on smartphone platform. Most importantly, we present the challenges that need to be addressed to make affect sensing on smartphone a reality.