Haidong Li

Zimeng Li, Sa Xiao, Cheng Wang et al. · amazon-science

Magnetic resonance imaging (MRI) using hyperpolarized noble gases provides a way to visualize the structure and function of human lung, but the long imaging time limits its broad research and clinical applications. Deep learning has demonstrated great potential for accelerating MRI by reconstructing images from undersampled data. However, most existing deep conventional neural networks (CNN) directly apply square convolution to k-space data without considering the inherent properties of k-space sampling, limiting k-space learning efficiency and image reconstruction quality. In this work, we propose an encoding enhanced (EN2) complex CNN for highly undersampled pulmonary MRI reconstruction. EN2 employs convolution along either the frequency or phase-encoding direction, resembling the mechanisms of k-space sampling, to maximize the utilization of the encoding correlation and integrity within a row or column of k-space. We also employ complex convolution to learn rich representations from the complex k-space data. In addition, we develop a feature-strengthened modularized unit to further boost the reconstruction performance. Experiments demonstrate that our approach can accurately reconstruct hyperpolarized 129Xe and 1H lung MRI from 6-fold undersampled k-space data and provide lung function measurements with minimal biases compared with fully-sampled image. These results demonstrate the effectiveness of the proposed algorithmic components and indicate that the proposed approach could be used for accelerated pulmonary MRI in research and clinical lung disease patient care.

Linxuan Han, Sa Xiao, Zimeng Li et al.

Multi-modal magnetic resonance imaging (MRI) provides information of lesions for computer-aided diagnosis from different views. Deep learning algorithms are suitable for identifying specific anatomical structures, segmenting lesions, and classifying diseases. Manual labels are limited due to the high expense, which hinders further improvement of accuracy. Self-supervised learning, particularly masked image modeling (MIM), has shown promise in utilizing unlabeled data. However, we spot model collapse when applying MIM to multi-modal MRI datasets. The performance of downstream tasks does not see any improvement following the collapsed model. To solve model collapse, we analyze and address it in two types: complete collapse and dimensional collapse. We find complete collapse occurs because the collapsed loss value in multi-modal MRI datasets falls below the normally converged loss value. Based on this, the hybrid mask pattern (HMP) masking strategy is introduced to elevate the collapsed loss above the normally converged loss value and avoid complete collapse. Additionally, we reveal that dimensional collapse stems from insufficient feature uniformity in MIM. We mitigate dimensional collapse by introducing the pyramid barlow twins (PBT) module as an explicit regularization method. Overall, we construct the enhanced MIM (E-MIM) with HMP and PBT module to avoid model collapse multi-modal MRI. Experiments are conducted on three multi-modal MRI datasets to validate the effectiveness of our approach in preventing both types of model collapse. By preventing model collapse, the training of the model becomes more stable, resulting in a decent improvement in performance for segmentation and classification tasks. The code is available at https://github.com/LinxuanHan/E-MIM.