Axel J. Soto

Juan Ramirez-Orta, Eduardo Xamena, Ana Maguitman et al.

Abstract. When writing an academic paper, researchers often spend considerable time reviewing and summarizing papers to extract relevant citations and data to compose the Introduction and Related Work sections. To address this problem, we propose QuOTeS, an interactive system designed to retrieve sentences related to a summary of the research from a collection of potential references and hence assist in the composition of new papers. QuOTeS integrates techniques from Query-Focused Extractive Summarization and High-Recall Information Retrieval to provide Interactive Query-Focused Summarization of scientific documents. To measure the performance of our system, we carried out a comprehensive user study where participants uploaded papers related to their research and evaluated the system in terms of its usability and the quality of the summaries it produces. The results show that QuOTeS provides a positive user experience and consistently provides query-focused summaries that are relevant, concise, and complete. We share the code of our system and the novel Query-Focused Summarization dataset collected during our experiments at https://github.com/jarobyte91/quotes.

Juan Ramirez-Orta, Eduardo Xamena, Ana Maguitman et al.

In this paper, we propose a novel method based on character sequence-to-sequence models to correct documents already processed with Optical Character Recognition (OCR) systems. The main contribution of this paper is a set of strategies to accurately process strings much longer than the ones used to train the sequence model while being sample- and resource-efficient, supported by thorough experimentation. The strategy with the best performance involves splitting the input document in character n-grams and combining their individual corrections into the final output using a voting scheme that is equivalent to an ensemble of a large number of sequence models. We further investigate how to weigh the contributions from each one of the members of this ensemble. We test our method on nine languages of the ICDAR 2019 competition on post-OCR text correction and achieve a new state-of-the-art performance in five of them. Our code for post-OCR correction is shared at https://github.com/jarobyte91/post_ocr_correction.

María Virginia Sabando, Ignacio Ponzoni, Evangelos E. Milios et al.

With the consolidation of deep learning in drug discovery, several novel algorithms for learning molecular representations have been proposed. Despite the interest of the community in developing new methods for learning molecular embeddings and their theoretical benefits, comparing molecular embeddings with each other and with traditional representations is not straightforward, which in turn hinders the process of choosing a suitable representation for QSAR modeling. A reason behind this issue is the difficulty of conducting a fair and thorough comparison of the different existing embedding approaches, which requires numerous experiments on various datasets and training scenarios. To close this gap, we reviewed the literature on methods for molecular embeddings and reproduced three unsupervised and two supervised molecular embedding techniques recently proposed in the literature. We compared these five methods concerning their performance in QSAR scenarios using different classification and regression datasets. We also compared these representations to traditional molecular representations, namely molecular descriptors and fingerprints. As opposed to the expected outcome, our experimental setup consisting of over 25,000 trained models and statistical tests revealed that the predictive performance using molecular embeddings did not significantly surpass that of traditional representations. While supervised embeddings yielded competitive results compared to those using traditional molecular representations, unsupervised embeddings tended to perform worse than traditional representations. Our results highlight the need for conducting a careful comparison and analysis of the different embedding techniques prior to using them in drug design tasks, and motivate a discussion about the potential of molecular embeddings in computer-aided drug design.