Learning Prototype Classifiers for Long-Tailed RecognitionSaurabh Sharma, Yongqin Xian, Ning Yu et al.
The problem of long-tailed recognition (LTR) has received attention in recent years due to the fundamental power-law distribution of objects in the real-world. Most recent works in LTR use softmax classifiers that are biased in that they correlate classifier norm with the amount of training data for a given class. In this work, we show that learning prototype classifiers addresses the biased softmax problem in LTR. Prototype classifiers can deliver promising results simply using Nearest-Class- Mean (NCM), a special case where prototypes are empirical centroids. We go one step further and propose to jointly learn prototypes by using distances to prototypes in representation space as the logit scores for classification. Further, we theoretically analyze the properties of Euclidean distance based prototype classifiers that lead to stable gradient-based optimization which is robust to outliers. To enable independent distance scales along each channel, we enhance Prototype classifiers by learning channel-dependent temperature parameters. Our analysis shows that prototypes learned by Prototype classifiers are better separated than empirical centroids. Results on four LTR benchmarks show that Prototype classifier outperforms or is comparable to state-of-the-art methods. Our code is made available at https://github.com/saurabhsharma1993/prototype-classifier-ltr.
Mind Reader: Reconstructing complex images from brain activitiesSikun Lin, Thomas Sprague, Ambuj K Singh
Understanding how the brain encodes external stimuli and how these stimuli can be decoded from the measured brain activities are long-standing and challenging questions in neuroscience. In this paper, we focus on reconstructing the complex image stimuli from fMRI (functional magnetic resonance imaging) signals. Unlike previous works that reconstruct images with single objects or simple shapes, our work aims to reconstruct image stimuli that are rich in semantics, closer to everyday scenes, and can reveal more perspectives. However, data scarcity of fMRI datasets is the main obstacle to applying state-of-the-art deep learning models to this problem. We find that incorporating an additional text modality is beneficial for the reconstruction problem compared to directly translating brain signals to images. Therefore, the modalities involved in our method are: (i) voxel-level fMRI signals, (ii) observed images that trigger the brain signals, and (iii) textual description of the images. To further address data scarcity, we leverage an aligned vision-language latent space pre-trained on massive datasets. Instead of training models from scratch to find a latent space shared by the three modalities, we encode fMRI signals into this pre-aligned latent space. Then, conditioned on embeddings in this space, we reconstruct images with a generative model. The reconstructed images from our pipeline balance both naturalness and fidelity: they are photo-realistic and capture the ground truth image contents well.
Global Counterfactual Explainer for Graph Neural NetworksMert Kosan, Zexi Huang, Sourav Medya et al.
Graph neural networks (GNNs) find applications in various domains such as computational biology, natural language processing, and computer security. Owing to their popularity, there is an increasing need to explain GNN predictions since GNNs are black-box machine learning models. One way to address this is counterfactual reasoning where the objective is to change the GNN prediction by minimal changes in the input graph. Existing methods for counterfactual explanation of GNNs are limited to instance-specific local reasoning. This approach has two major limitations of not being able to offer global recourse policies and overloading human cognitive ability with too much information. In this work, we study the global explainability of GNNs through global counterfactual reasoning. Specifically, we want to find a small set of representative counterfactual graphs that explains all input graphs. Towards this goal, we propose GCFExplainer, a novel algorithm powered by vertex-reinforced random walks on an edit map of graphs with a greedy summary. Extensive experiments on real graph datasets show that the global explanation from GCFExplainer provides important high-level insights of the model behavior and achieves a 46.9% gain in recourse coverage and a 9.5% reduction in recourse cost compared to the state-of-the-art local counterfactual explainers.
Deep Representations for Time-varying Brain DatasetsSikun Lin, Shuyun Tang, Scott Grafton et al.
Finding an appropriate representation of dynamic activities in the brain is crucial for many downstream applications. Due to its highly dynamic nature, temporally averaged fMRI (functional magnetic resonance imaging) can only provide a narrow view of underlying brain activities. Previous works lack the ability to learn and interpret the latent dynamics in brain architectures. This paper builds an efficient graph neural network model that incorporates both region-mapped fMRI sequences and structural connectivities obtained from DWI (diffusion-weighted imaging) as inputs. We find good representations of the latent brain dynamics through learning sample-level adaptive adjacency matrices and performing a novel multi-resolution inner cluster smoothing. We also attribute inputs with integrated gradients, which enables us to infer (1) highly involved brain connections and subnetworks for each task, (2) temporal keyframes of imaging sequences that characterize tasks, and (3) subnetworks that discriminate between individual subjects. This ability to identify critical subnetworks that characterize signal states across heterogeneous tasks and individuals is of great importance to neuroscience and other scientific domains. Extensive experiments and ablation studies demonstrate our proposed method's superiority and efficiency in spatial-temporal graph signal modeling with insightful interpretations of brain dynamics.
Fragment-based Pretraining and Finetuning on Molecular GraphsKha-Dinh Luong, Ambuj Singh
Property prediction on molecular graphs is an important application of Graph Neural Networks. Recently, unlabeled molecular data has become abundant, which facilitates the rapid development of self-supervised learning for GNNs in the chemical domain. In this work, we propose pretraining GNNs at the fragment level, a promising middle ground to overcome the limitations of node-level and graph-level pretraining. Borrowing techniques from recent work on principal subgraph mining, we obtain a compact vocabulary of prevalent fragments from a large pretraining dataset. From the extracted vocabulary, we introduce several fragment-based contrastive and predictive pretraining tasks. The contrastive learning task jointly pretrains two different GNNs: one on molecular graphs and the other on fragment graphs, which represents higher-order connectivity within molecules. By enforcing consistency between the fragment embedding and the aggregated embedding of the corresponding atoms from the molecular graphs, we ensure that the embeddings capture structural information at multiple resolutions. The structural information of fragment graphs is further exploited to extract auxiliary labels for graph-level predictive pretraining. We employ both the pretrained molecular-based and fragment-based GNNs for downstream prediction, thus utilizing the fragment information during finetuning. Our graph fragment-based pretraining (GraphFP) advances the performances on 5 out of 8 common molecular benchmarks and improves the performances on long-range biological benchmarks by at least 11.5%. Code is available at: https://github.com/lvkd84/GraphFP.
5.3LGAug 22, 2023
Graph Encoding and Neural Network Approaches for Volleyball Analytics: From Game Outcome to Individual Play PredictionsRhys Tracy, Haotian Xia, Alex Rasla et al.
This research aims to improve the accuracy of complex volleyball predictions and provide more meaningful insights to coaches and players. We introduce a specialized graph encoding technique to add additional contact-by-contact volleyball context to an already available volleyball dataset without any additional data gathering. We demonstrate the potential benefits of using graph neural networks (GNNs) on this enriched dataset for three different volleyball prediction tasks: rally outcome prediction, set location prediction, and hit type prediction. We compare the performance of our graph-based models to baseline models and analyze the results to better understand the underlying relationships in a volleyball rally. Our results show that the use of GNNs with our graph encoding yields a much more advanced analysis of the data, which noticeably improves prediction results overall. We also show that these baseline tasks can be significantly improved with simple adjustments, such as removing blocked hits. Lastly, we demonstrate the importance of choosing a model architecture that will better extract the important information for a certain task. Overall, our study showcases the potential strengths and weaknesses of using graph encodings in sports data analytics and hopefully will inspire future improvements in machine learning strategies across sports and applications by using graphbased encodings.
XplainLLM: A Knowledge-Augmented Dataset for Reliable Grounded Explanations in LLMsZichen Chen, Jianda Chen, Ambuj Singh et al.
Large Language Models (LLMs) have achieved remarkable success in natural language tasks, yet understanding their reasoning processes remains a significant challenge. We address this by introducing XplainLLM, a dataset accompanying an explanation framework designed to enhance LLM transparency and reliability. Our dataset comprises 24,204 instances where each instance interprets the LLM's reasoning behavior using knowledge graphs (KGs) and graph attention networks (GAT), and includes explanations of LLMs such as the decoder-only Llama-3 and the encoder-only RoBERTa. XplainLLM also features a framework for generating grounded explanations and the debugger-scores for multidimensional quality analysis. Our explanations include why-choose and why-not-choose components, reason-elements, and debugger-scores that collectively illuminate the LLM's reasoning behavior. Our evaluations demonstrate XplainLLM's potential to reduce hallucinations and improve grounded explanation generation in LLMs. XplainLLM is a resource for researchers and practitioners to build trust and verify the reliability of LLM outputs.
GNNX-BENCH: Unravelling the Utility of Perturbation-based GNN Explainers through In-depth BenchmarkingMert Kosan, Samidha Verma, Burouj Armgaan et al.
Numerous explainability methods have been proposed to shed light on the inner workings of GNNs. Despite the inclusion of empirical evaluations in all the proposed algorithms, the interrogative aspects of these evaluations lack diversity. As a result, various facets of explainability pertaining to GNNs, such as a comparative analysis of counterfactual reasoners, their stability to variational factors such as different GNN architectures, noise, stochasticity in non-convex loss surfaces, feasibility amidst domain constraints, and so forth, have yet to be formally investigated. Motivated by this need, we present a benchmarking study on perturbation-based explainability methods for GNNs, aiming to systematically evaluate and compare a wide range of explainability techniques. Among the key findings of our study, we identify the Pareto-optimal methods that exhibit superior efficacy and stability in the presence of noise. Nonetheless, our study reveals that all algorithms are affected by stability issues when faced with noisy data. Furthermore, we have established that the current generation of counterfactual explainers often fails to provide feasible recourses due to violations of topological constraints encoded by domain-specific considerations. Overall, this benchmarking study empowers stakeholders in the field of GNNs with a comprehensive understanding of the state-of-the-art explainability methods, potential research problems for further enhancement, and the implications of their application in real-world scenarios.
APEX: Empowering LLMs with Physics-Based Task Planning for Real-time InsightWanjing Huang, Weixiang Yan, Zhen Zhang et al.
Large Language Models (LLMs) demonstrate strong reasoning and task planning capabilities but remain fundamentally limited in physical interaction modeling. Existing approaches integrate perception via Vision-Language Models (VLMs) or adaptive decision-making through Reinforcement Learning (RL), but they fail to capture dynamic object interactions or require task-specific training, limiting their real-world applicability. We introduce APEX (Anticipatory Physics-Enhanced Execution), a framework that equips LLMs with physics-driven foresight for real-time task planning. APEX constructs structured graphs to identify and model the most relevant dynamic interactions in the environment, providing LLMs with explicit physical state updates. Simultaneously, APEX provides low-latency forward simulations of physically feasible actions, allowing LLMs to select optimal strategies based on predictive outcomes rather than static observations. We evaluate APEX on three benchmarks designed to assess perception, prediction, and decision-making: (1) Physics Reasoning Benchmark, testing causal inference and object motion prediction; (2) Tetris, evaluating whether physics-informed prediction enhances decision-making performance in long-horizon planning tasks; (3) Dynamic Obstacle Avoidance, assessing the immediate integration of perception and action feasibility analysis. APEX significantly outperforms standard LLMs and VLM-based models, demonstrating the necessity of explicit physics reasoning for bridging the gap between language-based intelligence and real-world task execution. The source code and experiment setup are publicly available at https://github.com/hwj20/APEX_EXP .
18.2AIJun 23, 2024Code
GraphEval36K: Benchmarking Coding and Reasoning Capabilities of Large Language Models on Graph DatasetsQiming Wu, Zichen Chen, Will Corcoran et al.
Large language models (LLMs) have achieved remarkable success in natural language processing (NLP), demonstrating significant capabilities in processing and understanding text data. However, recent studies have identified limitations in LLMs' ability to manipulate, program, and reason about structured data, especially graphs. We introduce GraphEval36K, the first comprehensive graph dataset, comprising 40 graph coding problems and 36,900 test cases to evaluate the ability of LLMs on graph problem-solving. Our dataset is categorized into eight primary and four sub-categories to ensure a thorough evaluation across different types of graphs. We benchmark ten LLMs, finding that private models outperform open-source ones, though the gap is narrowing. We also analyze the performance of LLMs across directed vs undirected graphs, different kinds of graph concepts, and network models. Furthermore, to improve the usability of our evaluation framework, we propose Structured Symbolic Decomposition (SSD), an instruction-based method designed to enhance LLM performance on complex graph tasks. Results show that SSD improves the average passing rate of GPT-4, GPT-4o, Gemini-Pro and Claude-3-Sonnet by 8.38%, 6.78%, 29.28% and 25.28%, respectively.
Global Human-guided Counterfactual Explanations for Molecular Properties via Reinforcement LearningDanqing Wang, Antonis Antoniades, Kha-Dinh Luong et al.
Counterfactual explanations of Graph Neural Networks (GNNs) offer a powerful way to understand data that can naturally be represented by a graph structure. Furthermore, in many domains, it is highly desirable to derive data-driven global explanations or rules that can better explain the high-level properties of the models and data in question. However, evaluating global counterfactual explanations is hard in real-world datasets due to a lack of human-annotated ground truth, which limits their use in areas like molecular sciences. Additionally, the increasing scale of these datasets provides a challenge for random search-based methods. In this paper, we develop a novel global explanation model RLHEX for molecular property prediction. It aligns the counterfactual explanations with human-defined principles, making the explanations more interpretable and easy for experts to evaluate. RLHEX includes a VAE-based graph generator to generate global explanations and an adapter to adjust the latent representation space to human-defined principles. Optimized by Proximal Policy Optimization (PPO), the global explanations produced by RLHEX cover 4.12% more input graphs and reduce the distance between the counterfactual explanation set and the input set by 0.47% on average across three molecular datasets. RLHEX provides a flexible framework to incorporate different human-designed principles into the counterfactual explanation generation process, aligning these explanations with domain expertise. The code and data are released at https://github.com/dqwang122/RLHEX.
DGCLUSTER: A Neural Framework for Attributed Graph Clustering via Modularity MaximizationAritra Bhowmick, Mert Kosan, Zexi Huang et al.
Graph clustering is a fundamental and challenging task in the field of graph mining where the objective is to group the nodes into clusters taking into consideration the topology of the graph. It has several applications in diverse domains spanning social network analysis, recommender systems, computer vision, and bioinformatics. In this work, we propose a novel method, DGCluster, which primarily optimizes the modularity objective using graph neural networks and scales linearly with the graph size. Our method does not require the number of clusters to be specified as a part of the input and can also leverage the availability of auxiliary node level information. We extensively test DGCluster on several real-world datasets of varying sizes, across multiple popular cluster quality metrics. Our approach consistently outperforms the state-of-the-art methods, demonstrating significant performance gains in almost all settings.
Learning Neural Contracting Dynamics: Extended Linearization and Global GuaranteesSean Jaffe, Alexander Davydov, Deniz Lapsekili et al.
Global stability and robustness guarantees in learned dynamical systems are essential to ensure well-behavedness of the systems in the face of uncertainty. We present Extended Linearized Contracting Dynamics (ELCD), the first neural network-based dynamical system with global contractivity guarantees in arbitrary metrics. The key feature of ELCD is a parametrization of the extended linearization of the nonlinear vector field. In its most basic form, ELCD is guaranteed to be (i) globally exponentially stable, (ii) equilibrium contracting, and (iii) globally contracting with respect to some metric. To allow for contraction with respect to more general metrics in the data space, we train diffeomorphisms between the data space and a latent space and enforce contractivity in the latent space, which ensures global contractivity in the data space. We demonstrate the performance of ELCD on the high dimensional LASA, multi-link pendulum, and Rosenbrock datasets.
4.6LGNov 29, 2024
Attribute-Enhanced Similarity Ranking for Sparse Link PredictionJoão Mattos, Zexi Huang, Mert Kosan et al.
Link prediction is a fundamental problem in graph data. In its most realistic setting, the problem consists of predicting missing or future links between random pairs of nodes from the set of disconnected pairs. Graph Neural Networks (GNNs) have become the predominant framework for link prediction. GNN-based methods treat link prediction as a binary classification problem and handle the extreme class imbalance -- real graphs are very sparse -- by sampling (uniformly at random) a balanced number of disconnected pairs not only for training but also for evaluation. However, we show that the reported performance of GNNs for link prediction in the balanced setting does not translate to the more realistic imbalanced setting and that simpler topology-based approaches are often better at handling sparsity. These findings motivate Gelato, a similarity-based link-prediction method that applies (1) graph learning based on node attributes to enhance a topological heuristic, (2) a ranking loss for addressing class imbalance, and (3) a negative sampling scheme that efficiently selects hard training pairs via graph partitioning. Experiments show that Gelato outperforms existing GNN-based alternatives.
5.1IVMay 3, 2025
Efficient Multi Subject Visual Reconstruction from fMRI Using Aligned RepresentationsChristos Zangos, Danish Ebadulla, Thomas Christopher Sprague et al.
This work introduces a novel approach to fMRI-based visual image reconstruction using a subject-agnostic common representation space. We show that the brain signals of the subjects can be aligned in this common space during training to form a semantically aligned common brain. This is leveraged to demonstrate that aligning subject-specific lightweight modules to a reference subject is significantly more efficient than traditional end-to-end training methods. Our approach excels in low-data scenarios. We evaluate our methods on different datasets, demonstrating that the common space is subject and dataset-agnostic.
2.6LGNov 7, 2024
Normalized Space Alignment: A Versatile Metric for Representation AnalysisDanish Ebadulla, Aditya Gulati, Ambuj Singh
We introduce a manifold analysis technique for neural network representations. Normalized Space Alignment (NSA) compares pairwise distances between two point clouds derived from the same source and having the same size, while potentially possessing differing dimensionalities. NSA can act as both an analytical tool and a differentiable loss function, providing a robust means of comparing and aligning representations across different layers and models. It satisfies the criteria necessary for both a similarity metric and a neural network loss function. We showcase NSA's versatility by illustrating its utility as a representation space analysis metric, a structure-preserving loss function, and a robustness analysis tool. NSA is not only computationally efficient but it can also approximate the global structural discrepancy during mini-batching, facilitating its use in a wide variety of neural network training paradigms.
2.0LGDec 12, 2023
IDKM: Memory Efficient Neural Network Quantization via Implicit, Differentiable k-MeansSean Jaffe, Ambuj K. Singh, Francesco Bullo
Compressing large neural networks with minimal performance loss is crucial to enabling their deployment on edge devices. (Cho et al., 2022) proposed a weight quantization method that uses an attention-based clustering algorithm called differentiable $k$-means (DKM). Despite achieving state-of-the-art results, DKM's performance is constrained by its heavy memory dependency. We propose an implicit, differentiable $k$-means algorithm (IDKM), which eliminates the major memory restriction of DKM. Let $t$ be the number of $k$-means iterations, $m$ be the number of weight-vectors, and $b$ be the number of bits per cluster address. IDKM reduces the overall memory complexity of a single $k$-means layer from $\mathcal{O}(t \cdot m \cdot 2^b)$ to $\mathcal{O}( m \cdot 2^b)$. We also introduce a variant, IDKM with Jacobian-Free-Backpropagation (IDKM-JFB), for which the time complexity of the gradient calculation is independent of $t$ as well. We provide a proof of concept of our methods by showing that, under the same settings, IDKM achieves comparable performance to DKM with less compute time and less memory. We also use IDKM and IDKM-JFB to quantize a large neural network, Resnet18, on hardware where DKM cannot train at all.
6.6LGMay 25, 2023
Robust Ante-hoc Graph Explainer using Bilevel OptimizationKha-Dinh Luong, Mert Kosan, Arlei Lopes Da Silva et al.
Explaining the decisions made by machine learning models for high-stakes applications is critical for increasing transparency and guiding improvements to these decisions. This is particularly true in the case of models for graphs, where decisions often depend on complex patterns combining rich structural and attribute data. While recent work has focused on designing so-called post-hoc explainers, the broader question of what constitutes a good explanation remains open. One intuitive property is that explanations should be sufficiently informative to reproduce the predictions given the data. In other words, a good explainer can be repurposed as a predictor. Post-hoc explainers do not achieve this goal as their explanations are highly dependent on fixed model parameters (e.g., learned GNN weights). To address this challenge, we propose RAGE (Robust Ante-hoc Graph Explainer), a novel and flexible ante-hoc explainer designed to discover explanations for graph neural networks using bilevel optimization, with a focus on the chemical domain. RAGE can effectively identify molecular substructures that contain the full information needed for prediction while enabling users to rank these explanations in terms of relevance. Our experiments on various molecular classification tasks show that RAGE explanations are better than existing post-hoc and ante-hoc approaches.
Link Prediction without Graph Neural NetworksZexi Huang, Mert Kosan, Arlei Silva et al.
Link prediction, which consists of predicting edges based on graph features, is a fundamental task in many graph applications. As for several related problems, Graph Neural Networks (GNNs), which are based on an attribute-centric message-passing paradigm, have become the predominant framework for link prediction. GNNs have consistently outperformed traditional topology-based heuristics, but what contributes to their performance? Are there simpler approaches that achieve comparable or better results? To answer these questions, we first identify important limitations in how GNN-based link prediction methods handle the intrinsic class imbalance of the problem -- due to the graph sparsity -- in their training and evaluation. Moreover, we propose Gelato, a novel topology-centric framework that applies a topological heuristic to a graph enhanced by attribute information via graph learning. Our model is trained end-to-end with an N-pair loss on an unbiased training set to address class imbalance. Experiments show that Gelato is 145% more accurate, trains 11 times faster, infers 6,000 times faster, and has less than half of the trainable parameters compared to state-of-the-art GNNs for link prediction.
Graph Neural Diffusion Networks for Semi-supervised LearningWei Ye, Zexi Huang, Yunqi Hong et al.
Graph Convolutional Networks (GCN) is a pioneering model for graph-based semi-supervised learning. However, GCN does not perform well on sparsely-labeled graphs. Its two-layer version cannot effectively propagate the label information to the whole graph structure (i.e., the under-smoothing problem) while its deep version over-smoothens and is hard to train (i.e., the over-smoothing problem). To solve these two issues, we propose a new graph neural network called GND-Nets (for Graph Neural Diffusion Networks) that exploits the local and global neighborhood information of a vertex in a single layer. Exploiting the shallow network mitigates the over-smoothing problem while exploiting the local and global neighborhood information mitigates the under-smoothing problem. The utilization of the local and global neighborhood information of a vertex is achieved by a new graph diffusion method called neural diffusions, which integrate neural networks into the conventional linear and nonlinear graph diffusions. The adoption of neural networks makes neural diffusions adaptable to different datasets. Extensive experiments on various sparsely-labeled graphs verify the effectiveness and efficiency of GND-Nets compared to state-of-the-art approaches.
Modeling Human-AI Team Decision MakingWei Ye, Francesco Bullo, Noah Friedkin et al.
AI and humans bring complementary skills to group deliberations. Modeling this group decision making is especially challenging when the deliberations include an element of risk and an exploration-exploitation process of appraising the capabilities of the human and AI agents. To investigate this question, we presented a sequence of intellective issues to a set of human groups aided by imperfect AI agents. A group's goal was to appraise the relative expertise of the group's members and its available AI agents, evaluate the risks associated with different actions, and maximize the overall reward by reaching consensus. We propose and empirically validate models of human-AI team decision making under such uncertain circumstances, and show the value of socio-cognitive constructs of prospect theory, influence dynamics, and Bayesian learning in predicting the behavior of human-AI groups.
Event Detection on Dynamic GraphsMert Kosan, Arlei Silva, Sourav Medya et al.
Event detection is a critical task for timely decision-making in graph analytics applications. Despite the recent progress towards deep learning on graphs, event detection on dynamic graphs presents particular challenges to existing architectures. Real-life events are often associated with sudden deviations of the normal behavior of the graph. However, existing approaches for dynamic node embedding are unable to capture the graph-level dynamics related to events. In this paper, we propose DyGED, a simple yet novel deep learning model for event detection on dynamic graphs. DyGED learns correlations between the graph macro dynamics -- i.e. a sequence of graph-level representations -- and labeled events. Moreover, our approach combines structural and temporal self-attention mechanisms to account for application-specific node and time importances effectively. Our experimental evaluation, using a representative set of datasets, demonstrates that DyGED outperforms competing solutions in terms of event detection accuracy by up to 8.5% while being more scalable than the top alternatives. We also present case studies illustrating key features of our model.
POLE: Polarized Embedding for Signed NetworksZexi Huang, Arlei Silva, Ambuj Singh
From the 2016 U.S. presidential election to the 2021 Capitol riots to the spread of misinformation related to COVID-19, many have blamed social media for today's deeply divided society. Recent advances in machine learning for signed networks hold the promise to guide small interventions with the goal of reducing polarization in social media. However, existing models are especially ineffective in predicting conflicts (or negative links) among users. This is due to a strong correlation between link signs and the network structure, where negative links between polarized communities are too sparse to be predicted even by state-of-the-art approaches. To address this problem, we first design a partition-agnostic polarization measure for signed graphs based on the signed random-walk and show that many real-world graphs are highly polarized. Then, we propose POLE (POLarized Embedding for signed networks), a signed embedding method for polarized graphs that captures both topological and signed similarities jointly via signed autocovariance. Through extensive experiments, we show that POLE significantly outperforms state-of-the-art methods in signed link prediction, particularly for negative links with gains of up to one order of magnitude.
1.6LGApr 19, 2021
Learning Interpretable Models for Coupled Networks Under Domain ConstraintsHongyuan You, Sikun Lin, Ambuj K. Singh
Modeling the behavior of coupled networks is challenging due to their intricate dynamics. For example in neuroscience, it is of critical importance to understand the relationship between the functional neural processes and anatomical connectivities. Modern neuroimaging techniques allow us to separately measure functional connectivity through fMRI imaging and the underlying white matter wiring through diffusion imaging. Previous studies have shown that structural edges in brain networks improve the inference of functional edges and vice versa. In this paper, we investigate the idea of coupled networks through an optimization framework by focusing on interactions between structural edges and functional edges of brain networks. We consider both types of edges as observed instances of random variables that represent different underlying network processes. The proposed framework does not depend on Gaussian assumptions and achieves a more robust performance on general data compared with existing approaches. To incorporate existing domain knowledge into such studies, we propose a novel formulation to place hard network constraints on the noise term while estimating interactions. This not only leads to a cleaner way of applying network constraints but also provides a more scalable solution when network connectivity is sparse. We validate our method on multishell diffusion and task-evoked fMRI datasets from the Human Connectome Project, leading to both important insights on structural backbones that support various types of task activities as well as general solutions to the study of coupled networks.
Expertise and confidence explain how social influence evolves along intellective tasksOmid Askarisichani, Elizabeth Y. Huang, Abed K. Musaffar et al.
Discovering the antecedents of individuals' influence in collaborative environments is an important, practical, and challenging problem. In this paper, we study interpersonal influence in small groups of individuals who collectively execute a sequence of intellective tasks. We observe that along an issue sequence with feedback, individuals with higher expertise and social confidence are accorded higher interpersonal influence. We also observe that low-performing individuals tend to underestimate their high-performing teammate's expertise. Based on these observations, we introduce three hypotheses and present empirical and theoretical support for their validity. We report empirical evidence on longstanding theories of transactive memory systems, social comparison, and confidence heuristics on the origins of social influence. We propose a cognitive dynamical model inspired by these theories to describe the process by which individuals adjust interpersonal influences over time. We demonstrate the model's accuracy in predicting individuals' influence and provide analytical results on its asymptotic behavior for the case with identically performing individuals. Lastly, we propose a novel approach using deep neural networks on a pre-trained text embedding model for predicting the influence of individuals. Using message contents, message times, and individual correctness collected during tasks, we are able to accurately predict individuals' self-reported influence over time. Extensive experiments verify the accuracy of the proposed models compared to baselines such as structural balance and reflected appraisal model. While the neural networks model is the most accurate, the dynamical model is the most interpretable for influence prediction.
1.2LGMay 31, 2020
DANR: Discrepancy-aware Network RegularizationHongyuan You, Furkan Kocayusufoglu, Ambuj K. Singh
Network regularization is an effective tool for incorporating structural prior knowledge to learn coherent models over networks, and has yielded provably accurate estimates in applications ranging from spatial economics to neuroimaging studies. Recently, there has been an increasing interest in extending network regularization to the spatio-temporal case to accommodate the evolution of networks. However, in both static and spatio-temporal cases, missing or corrupted edge weights can compromise the ability of network regularization to discover desired solutions. To address these gaps, we propose a novel approach---{\it discrepancy-aware network regularization} (DANR)---that is robust to inadequate regularizations and effectively captures model evolution and structural changes over spatio-temporal networks. We develop a distributed and scalable algorithm based on the alternating direction method of multipliers (ADMM) to solve the proposed problem with guaranteed convergence to global optimum solutions. Experimental results on both synthetic and real-world networks demonstrate that our approach achieves improved performance on various tasks, and enables interpretation of model changes in evolving networks.
Learning Deep Graph Representations via Convolutional Neural NetworksWei Ye, Omid Askarisichani, Alex Jones et al.
Graph-structured data arise in many scenarios. A fundamental problem is to quantify the similarities of graphs for tasks such as classification. R-convolution graph kernels are positive-semidefinite functions that decompose graphs into substructures and compare them. One problem in the effective implementation of this idea is that the substructures are not independent, which leads to high-dimensional feature space. In addition, graph kernels cannot capture the high-order complex interactions between vertices. To mitigate these two problems, we propose a framework called DeepMap to learn deep representations for graph feature maps. The learned deep representation for a graph is a dense and low-dimensional vector that captures complex high-order interactions in a vertex neighborhood. DeepMap extends Convolutional Neural Networks (CNNs) to arbitrary graphs by generating aligned vertex sequences and building the receptive field for each vertex. We empirically validate DeepMap on various graph classification benchmarks and demonstrate that it achieves state-of-the-art performance.
2.0IVOct 2, 2019
Estimating localized complexity of white-matter wiring with GANsHaraldur T. Hallgrimsson, Richika Sharan, Scott T. Grafton et al.
In-vivo examination of the physical connectivity of axonal projections through the white matter of the human brain is made possible by diffusion weighted magnetic resonance imaging (dMRI) Analysis of dMRI commonly considers derived scalar metrics such as fractional anisotrophy as proxies for "white matter integrity," and differences of such measures have been observed as significantly correlating with various neurological diagnosis and clinical measures such as executive function, presence of multiple sclerosis, and genetic similarity. The analysis of such voxel measures is confounded in areas of more complicated fiber wiring due to crossing, kissing, and dispersing fibers. Recently, Volz et al. introduced a simple probabilistic measure of the count of distinct fiber populations within a voxel, which was shown to reduce variance in group comparisons. We propose a complementary measure that considers the complexity of a voxel in context of its local region, with an aim to quantify the localized wiring complexity of every part of white matter. This allows, for example, identification of particularly ambiguous regions of the brain for tractographic approaches of modeling global wiring connectivity. Our method builds on recent advances in image inpainting, in which the task is to plausibly fill in a missing region of an image. Our proposed method builds on a Bayesian estimate of heteroscedastic aleatoric uncertainty of a region of white matter by inpainting it from its context. We define the localized wiring complexity of white matter as how accurately and confidently a well-trained model can predict the missing patch. In our results, we observe low aleatoric uncertainty along major neuronal pathways which increases at junctions and towards cortex boundaries. This directly quantifies the difficulty of lesion inpainting of dMRI images at all parts of white matter.
Learning Heuristics over Large Graphs via Deep Reinforcement LearningSahil Manchanda, Akash Mittal, Anuj Dhawan et al.
There has been an increased interest in discovering heuristics for combinatorial problems on graphs through machine learning. While existing techniques have primarily focused on obtaining high-quality solutions, scalability to billion-sized graphs has not been adequately addressed. In addition, the impact of budget-constraint, which is necessary for many practical scenarios, remains to be studied. In this paper, we propose a framework called GCOMB to bridge these gaps. GCOMB trains a Graph Convolutional Network (GCN) using a novel probabilistic greedy mechanism to predict the quality of a node. To further facilitate the combinatorial nature of the problem, GCOMB utilizes a Q-learning framework, which is made efficient through importance sampling. We perform extensive experiments on real graphs to benchmark the efficiency and efficacy of GCOMB. Our results establish that GCOMB is 100 times faster and marginally better in quality than state-of-the-art algorithms for learning combinatorial algorithms. Additionally, a case-study on the practical combinatorial problem of Influence Maximization (IM) shows GCOMB is 150 times faster than the specialized IM algorithm IMM with similar quality.
6.6APFeb 14, 2018
Spatial Coherence of Oriented White Matter Microstructure: Applications to White Matter Regions Associated with Genetic SimilarityHaraldur T. Hallgrímsson, Matthew Cieslak, Luca Foschini et al.
We present a method to discover differences between populations with respect to the spatial coherence of their oriented white matter microstructure in arbitrarily shaped white matter regions. This method is applied to diffusion MRI scans of a subset of the Human Connectome Project dataset: 57 pairs of monozygotic and 52 pairs of dizygotic twins. After controlling for morphological similarity between twins, we identify 3.7% of all white matter as being associated with genetic similarity (35.1k voxels, $p < 10^{-4}$, false discovery rate 1.5%), 75% of which spatially clusters into twenty-two contiguous white matter regions. Furthermore, we show that the orientation similarity within these regions generalizes to a subset of 47 pairs of non-twin siblings, and show that these siblings are on average as similar as dizygotic twins. The regions are located in deep white matter including the superior longitudinal fasciculus, the optic radiations, the middle cerebellar peduncle, the corticospinal tract, and within the anterior temporal lobe, as well as the cerebellum, brain stem, and amygdalae. These results extend previous work using undirected fractional anisotrophy for measuring putative heritable influences in white matter. Our multidirectional extension better accounts for crossing fiber connections within voxels. This bottom up approach has at its basis a novel measurement of coherence within neighboring voxel dyads between subjects, and avoids some of the fundamental ambiguities encountered with tractographic approaches to white matter analysis that estimate global connectivity.
4.7LGDec 19, 2015
Discriminative Subnetworks with Regularized Spectral Learning for Global-state Network DataXuan Hong Dang, Ambuj K. Singh, Petko Bogdanov et al.
Data mining practitioners are facing challenges from data with network structure. In this paper, we address a specific class of global-state networks which comprises of a set of network instances sharing a similar structure yet having different values at local nodes. Each instance is associated with a global state which indicates the occurrence of an event. The objective is to uncover a small set of discriminative subnetworks that can optimally classify global network values. Unlike most existing studies which explore an exponential subnetwork space, we address this difficult problem by adopting a space transformation approach. Specifically, we present an algorithm that optimizes a constrained dual-objective function to learn a low-dimensional subspace that is capable of discriminating networks labelled by different global states, while reconciling with common network topology sharing across instances. Our algorithm takes an appealing approach from spectral graph learning and we show that the globally optimum solution can be achieved via matrix eigen-decomposition.
3.3SINov 18, 2015
Behavior Query Discovery in System-Generated Temporal GraphsBo Zong, Xusheng Xiao, Zhichun Li et al.
Computer system monitoring generates huge amounts of logs that record the interaction of system entities. How to query such data to better understand system behaviors and identify potential system risks and malicious behaviors becomes a challenging task for system administrators due to the dynamics and heterogeneity of the data. System monitoring data are essentially heterogeneous temporal graphs with nodes being system entities and edges being their interactions over time. Given the complexity of such graphs, it becomes time-consuming for system administrators to manually formulate useful queries in order to examine abnormal activities, attacks, and vulnerabilities in computer systems. In this work, we investigate how to query temporal graphs and treat query formulation as a discriminative temporal graph pattern mining problem. We introduce TGMiner to mine discriminative patterns from system logs, and these patterns can be taken as templates for building more complex queries. TGMiner leverages temporal information in graphs to prune graph patterns that share similar growth trend without compromising pattern quality. Experimental results on real system data show that TGMiner is 6-32 times faster than baseline methods. The discovered patterns were verified by system experts; they achieved high precision (97%) and recall (91%).
5.9SIOct 17, 2015
A Distance Measure for the Analysis of Polar Opinion Dynamics in Social NetworksVictor Amelkin, Ambuj Singh, Petko Bogdanov
Analysis of opinion dynamics in social networks plays an important role in today's life. For applications such as predicting users' political preference, it is particularly important to be able to analyze the dynamics of competing opinions. While observing the evolution of polar opinions of a social network's users over time, can we tell when the network "behaved" abnormally? Furthermore, can we predict how the opinions of the users will change in the future? Do opinions evolve according to existing network opinion dynamics models? To answer such questions, it is not sufficient to study individual user behavior, since opinions can spread far beyond users' egonets. We need a method to analyze opinion dynamics of all network users simultaneously and capture the effect of individuals' behavior on the global evolution pattern of the social network. In this work, we introduce Social Network Distance (SND) - a distance measure that quantifies the "cost" of evolution of one snapshot of a social network into another snapshot under various models of polar opinion propagation. SND has a rich semantics of a transportation problem, yet, is computable in time linear in the number of users, which makes SND applicable to the analysis of large-scale online social networks. In our experiments with synthetic and real-world Twitter data, we demonstrate the utility of our distance measure for anomalous event detection. It achieves a true positive rate of 0.83, twice as high as that of alternatives. When employed for opinion prediction in Twitter, our method's accuracy is 75.63%, which is 7.5% higher than that of the next best method. Source Code: https://cs.ucsb.edu/~victor/pub/ucsb/dbl/snd/
1.2DBSep 12, 2014
Nearest Keyword Set Search in Multi-dimensional DatasetsVishwakarma Singh, Ambuj K. Singh
Keyword-based search in text-rich multi-dimensional datasets facilitates many novel applications and tools. In this paper, we consider objects that are tagged with keywords and are embedded in a vector space. For these datasets, we study queries that ask for the tightest groups of points satisfying a given set of keywords. We propose a novel method called ProMiSH (Projection and Multi Scale Hashing) that uses random projection and hash-based index structures, and achieves high scalability and speedup. We present an exact and an approximate version of the algorithm. Our empirical studies, both on real and synthetic datasets, show that ProMiSH has a speedup of more than four orders over state-of-the-art tree-based techniques. Our scalability tests on datasets of sizes up to 10 million and dimensions up to 100 for queries having up to 9 keywords show that ProMiSH scales linearly with the dataset size, the dataset dimension, the query size, and the result size.
1.2SIOct 12, 2012
Inferring the Underlying Structure of Information CascadesBo Zong, Yinghui Wu, Ambuj K. Singh et al.
In social networks, information and influence diffuse among users as cascades. While the importance of studying cascades has been recognized in various applications, it is difficult to observe the complete structure of cascades in practice. Moreover, much less is known on how to infer cascades based on partial observations. In this paper we study the cascade inference problem following the independent cascade model, and provide a full treatment from complexity to algorithms: (a) We propose the idea of consistent trees as the inferred structures for cascades; these trees connect source nodes and observed nodes with paths satisfying the constraints from the observed temporal information. (b) We introduce metrics to measure the likelihood of consistent trees as inferred cascades, as well as several optimization problems for finding them. (c) We show that the decision problems for consistent trees are in general NP-complete, and that the optimization problems are hard to approximate. (d) We provide approximation algorithms with performance guarantees on the quality of the inferred cascades, as well as heuristics. We experimentally verify the efficiency and effectiveness of our inference algorithms, using real and synthetic data.