NCJul 3, 2023
A large calcium-imaging dataset reveals a systematic V4 organization for natural scenesTianye Wang, Haoxuan Yao, Tai Sing Lee et al.
The visual system evolved to process natural scenes, yet most of our understanding of the topology and function of visual cortex derives from studies using artificial stimuli. To gain deeper insights into visual processing of natural scenes, we utilized widefield calcium-imaging of primate V4 in response to many natural images, generating a large dataset of columnar-scale responses. We used this dataset to build a digital twin of V4 via deep learning, generating a detailed topographical map of natural image preferences at each cortical position. The map revealed clustered functional domains for specific classes of natural image features. These ranged from surface-related attributes like color and texture to shape-related features such as edges, curvature, and facial features. We validated the model-predicted domains with additional widefield calcium-imaging and single-cell resolution two-photon imaging. Our study illuminates the detailed topological organization and neural codes in V4 that represent natural scenes.
NCJul 19, 2024
NeuroBind: Towards Unified Multimodal Representations for Neural SignalsFengyu Yang, Chao Feng, Daniel Wang et al.
Understanding neural activity and information representation is crucial for advancing knowledge of brain function and cognition. Neural activity, measured through techniques like electrophysiology and neuroimaging, reflects various aspects of information processing. Recent advances in deep neural networks offer new approaches to analyzing these signals using pre-trained models. However, challenges arise due to discrepancies between different neural signal modalities and the limited scale of high-quality neural data. To address these challenges, we present NeuroBind, a general representation that unifies multiple brain signal types, including EEG, fMRI, calcium imaging, and spiking data. To achieve this, we align neural signals in these image-paired neural datasets to pre-trained vision-language embeddings. Neurobind is the first model that studies different neural modalities interconnectedly and is able to leverage high-resource modality models for various neuroscience tasks. We also showed that by combining information from different neural signal modalities, NeuroBind enhances downstream performance, demonstrating the effectiveness of the complementary strengths of different neural modalities. As a result, we can leverage multiple types of neural signals mapped to the same space to improve downstream tasks, and demonstrate the complementary strengths of different neural modalities. This approach holds significant potential for advancing neuroscience research, improving AI systems, and developing neuroprosthetics and brain-computer interfaces.
CVJun 12, 2024
Self-Attention-Based Contextual Modulation Improves Neural System IdentificationIsaac Lin, Tianye Wang, Shang Gao et al.
Convolutional neural networks (CNNs) have been shown to be state-of-the-art models for visual cortical neurons. Cortical neurons in the primary visual cortex are sensitive to contextual information mediated by extensive horizontal and feedback connections. Standard CNNs integrate global contextual information to model contextual modulation via two mechanisms: successive convolutions and a fully connected readout layer. In this paper, we find that self-attention (SA), an implementation of non-local network mechanisms, can improve neural response predictions over parameter-matched CNNs in two key metrics: tuning curve correlation and peak tuning. We introduce peak tuning as a metric to evaluate a model's ability to capture a neuron's top feature preference. We factorize networks to assess each context mechanism, revealing that information in the local receptive field is most important for modeling overall tuning, but surround information is critically necessary for characterizing the tuning peak. We find that self-attention can replace posterior spatial-integration convolutions when learned incrementally, and is further enhanced in the presence of a fully connected readout layer, suggesting that the two context mechanisms are complementary. Finally, we find that decomposing receptive field learning and contextual modulation learning in an incremental manner may be an effective and robust mechanism for learning surround-center interactions.
ROJun 4, 2020
Distributed Localization without Direct Communication Inspired by Statistical MechanicsJingxian Wang, Tianye Wang, Wei Wang et al.
Distributed localization is essential in many robotic collective tasks such as shape formation and self-assembly.Inspired by the statistical mechanics of energy transition, this paper presents a fully distributed localization algorithm named as virtual particle exchange (VPE) localization algorithm, where each robot repetitively exchanges virtual particles (VPs) with neighbors and eventually obtains its relative position from the virtual particle (VP) amount it owns. Using custom-designed hardware and protocol, VPE localization algorithm allows robots to achieve localization using sensor readings only, avoiding direct communication with neighbors and keeping anonymity. Moreover, VPE localization algorithm determines the swarm center automatically, thereby eliminating the requirement of fixed beacons to embody the origin of coordinates. Theoretical analysis proves that the VPE localization algorithm can always converge to the same result regardless of initial state and has low asymptotic time and memory complexity. Extensive localization simulations with up to 10000 robots and experiments with 52 lowcost robots are carried out, which verify that VPE localization algorithm is scalable, accurate and robust to sensor noises. Based on the VPE localization algorithm, shape formations are further achieved in both simulations and experiments with 52 robots, illustrating that the algorithm can be directly applied to support swarm collaborative tasks.