Large Language Models for Automated Data Science: Introducing CAAFE for Context-Aware Automated Feature EngineeringNoah Hollmann, Samuel Müller, Frank Hutter
As the field of automated machine learning (AutoML) advances, it becomes increasingly important to incorporate domain knowledge into these systems. We present an approach for doing so by harnessing the power of large language models (LLMs). Specifically, we introduce Context-Aware Automated Feature Engineering (CAAFE), a feature engineering method for tabular datasets that utilizes an LLM to iteratively generate additional semantically meaningful features for tabular datasets based on the description of the dataset. The method produces both Python code for creating new features and explanations for the utility of the generated features. Despite being methodologically simple, CAAFE improves performance on 11 out of 14 datasets -- boosting mean ROC AUC performance from 0.798 to 0.822 across all dataset - similar to the improvement achieved by using a random forest instead of logistic regression on our datasets. Furthermore, CAAFE is interpretable by providing a textual explanation for each generated feature. CAAFE paves the way for more extensive semi-automation in data science tasks and emphasizes the significance of context-aware solutions that can extend the scope of AutoML systems to semantic AutoML. We release our $\href{https://github.com/automl/CAAFE}{code}$, a simple $\href{https://colab.research.google.com/drive/1mCA8xOAJZ4MaB_alZvyARTMjhl6RZf0a}{demo}$ and a $\href{https://pypi.org/project/caafe/}{python\ package}$.
20.3LGNov 15, 2024
Drift-Resilient TabPFN: In-Context Learning Temporal Distribution Shifts on Tabular DataKai Helli, David Schnurr, Noah Hollmann et al.
While most ML models expect independent and identically distributed data, this assumption is often violated in real-world scenarios due to distribution shifts, resulting in the degradation of machine learning model performance. Until now, no tabular method has consistently outperformed classical supervised learning, which ignores these shifts. To address temporal distribution shifts, we present Drift-Resilient TabPFN, a fresh approach based on In-Context Learning with a Prior-Data Fitted Network that learns the learning algorithm itself: it accepts the entire training dataset as input and makes predictions on the test set in a single forward pass. Specifically, it learns to approximate Bayesian inference on synthetic datasets drawn from a prior that specifies the model's inductive bias. This prior is based on structural causal models (SCM), which gradually shift over time. To model shifts of these causal models, we use a secondary SCM, that specifies changes in the primary model parameters. The resulting Drift-Resilient TabPFN can be applied to unseen data, runs in seconds on small to moderately sized datasets and needs no hyperparameter tuning. Comprehensive evaluations across 18 synthetic and real-world datasets demonstrate large performance improvements over a wide range of baselines, such as XGB, CatBoost, TabPFN, and applicable methods featured in the Wild-Time benchmark. Compared to the strongest baselines, it improves accuracy from 0.688 to 0.744 and ROC AUC from 0.786 to 0.832 while maintaining stronger calibration. This approach could serve as significant groundwork for further research on out-of-distribution prediction.
22.0LGMay 29, 2025
Position: The Future of Bayesian Prediction Is Prior-FittedSamuel Müller, Arik Reuter, Noah Hollmann et al.
Training neural networks on randomly generated artificial datasets yields Bayesian models that capture the prior defined by the dataset-generating distribution. Prior-data Fitted Networks (PFNs) are a class of methods designed to leverage this insight. In an era of rapidly increasing computational resources for pre-training and a near stagnation in the generation of new real-world data in many applications, PFNs are poised to play a more important role across a wide range of applications. They enable the efficient allocation of pre-training compute to low-data scenarios. Originally applied to small Bayesian modeling tasks, the field of PFNs has significantly expanded to address more complex domains and larger datasets. This position paper argues that PFNs and other amortized inference approaches represent the future of Bayesian inference, leveraging amortized learning to tackle data-scarce problems. We thus believe they are a fruitful area of research. In this position paper, we explore their potential and directions to address their current limitations.
27.3LGJul 5, 2025
Real-TabPFN: Improving Tabular Foundation Models via Continued Pre-training With Real-World DataAnurag Garg, Muhammad Ali, Noah Hollmann et al.
Foundation models for tabular data, like TabPFN, achieve strong performance on small datasets when pre-trained solely on synthetic data. We show that this performance can be significantly boosted by a targeted continued pre-training phase. Specifically, we demonstrate that leveraging a small, curated collection of large, real-world datasets for continued pre-training yields superior downstream predictive accuracy compared to using broader, potentially noisier corpora like CommonCrawl or GitTables. Our resulting model, Real-TabPFN, achieves substantial performance gains on 29 datasets from the OpenML AutoML Benchmark.
FairPFN: A Tabular Foundation Model for Causal FairnessJake Robertson, Noah Hollmann, Samuel Müller et al.
Machine learning (ML) systems are utilized in critical sectors, such as healthcare, law enforcement, and finance. However, these systems are often trained on historical data that contains demographic biases, leading to ML decisions that perpetuate or exacerbate existing social inequalities. Causal fairness provides a transparent, human-in-the-loop framework to mitigate algorithmic discrimination, aligning closely with legal doctrines of direct and indirect discrimination. However, current causal fairness frameworks hold a key limitation in that they assume prior knowledge of the correct causal model, restricting their applicability in complex fairness scenarios where causal models are unknown or difficult to identify. To bridge this gap, we propose FairPFN, a tabular foundation model pre-trained on synthetic causal fairness data to identify and mitigate the causal effects of protected attributes in its predictions. FairPFN's key contribution is that it requires no knowledge of the causal model and still demonstrates strong performance in identifying and removing protected causal effects across a diverse set of hand-crafted and real-world scenarios relative to robust baseline methods. FairPFN paves the way for promising future research, making causal fairness more accessible to a wider variety of complex fairness problems.
TrivialAugment: Tuning-free Yet State-of-the-Art Data AugmentationSamuel G. Müller, Frank Hutter
Automatic augmentation methods have recently become a crucial pillar for strong model performance in vision tasks. While existing automatic augmentation methods need to trade off simplicity, cost and performance, we present a most simple baseline, TrivialAugment, that outperforms previous methods for almost free. TrivialAugment is parameter-free and only applies a single augmentation to each image. Thus, TrivialAugment's effectiveness is very unexpected to us and we performed very thorough experiments to study its performance. First, we compare TrivialAugment to previous state-of-the-art methods in a variety of image classification scenarios. Then, we perform multiple ablation studies with different augmentation spaces, augmentation methods and setups to understand the crucial requirements for its performance. Additionally, we provide a simple interface to facilitate the widespread adoption of automatic augmentation methods, as well as our full code base for reproducibility. Since our work reveals a stagnation in many parts of automatic augmentation research, we end with a short proposal of best practices for sustained future progress in automatic augmentation methods.
5.5LGFeb 5, 2021
In-Loop Meta-Learning with Gradient-Alignment RewardSamuel Müller, André Biedenkapp, Frank Hutter
At the heart of the standard deep learning training loop is a greedy gradient step minimizing a given loss. We propose to add a second step to maximize training generalization. To do this, we optimize the loss of the next training step. While computing the gradient for this generally is very expensive and many interesting applications consider non-differentiable parameters (e.g. due to hard samples), we present a cheap-to-compute and memory-saving reward, the gradient-alignment reward (GAR), that can guide the optimization. We use this reward to optimize multiple distributions during model training. First, we present the application of GAR to choosing the data distribution as a mixture of multiple dataset splits in a small scale setting. Second, we show that it can successfully guide learning augmentation strategies competitive with state-of-the-art augmentation strategies on CIFAR-10 and CIFAR-100.
Byte-Pair Encoding for Text-to-SQL GenerationSamuel Müller, Andreas Vlachos
Neural sequence-to-sequence models provide a competitive approach to the task of mapping a question in natural language to an SQL query, also referred to as text-to-SQL generation. The Byte-Pair Encoding algorithm (BPE) has previously been used to improve machine translation (MT) between natural languages. In this work, we adapt BPE for text-to-SQL generation. As the datasets for this task are rather small compared to MT, we present a novel stopping criterion that prevents overfitting the BPE encoding to the training set. Additionally, we present AST BPE, which is a version of BPE that uses the Abstract Syntax Tree (AST) of the SQL statement to guide BPE merges and therefore produce BPE encodings that generalize better. We improved the accuracy of a strong attentive seq2seq baseline on five out of six English text-to-SQL tasks while reducing training time by more than 50% on four of them due to the shortened targets. Finally, on two of these tasks we exceeded previously reported accuracies.