Aditya Nair

Amber Hu, David Zoltowski, Aditya Nair et al.

Understanding how the collective activity of neural populations relates to computation and ultimately behavior is a key goal in neuroscience. To this end, statistical methods which describe high-dimensional neural time series in terms of low-dimensional latent dynamics have played a fundamental role in characterizing neural systems. Yet, what constitutes a successful method involves two opposing criteria: (1) methods should be expressive enough to capture complex nonlinear dynamics, and (2) they should maintain a notion of interpretability often only warranted by simpler linear models. In this paper, we develop an approach that balances these two objectives: the Gaussian Process Switching Linear Dynamical System (gpSLDS). Our method builds on previous work modeling the latent state evolution via a stochastic differential equation whose nonlinear dynamics are described by a Gaussian process (GP-SDEs). We propose a novel kernel function which enforces smoothly interpolated locally linear dynamics, and therefore expresses flexible -- yet interpretable -- dynamics akin to those of recurrent switching linear dynamical systems (rSLDS). Our approach resolves key limitations of the rSLDS such as artifactual oscillations in dynamics near discrete state boundaries, while also providing posterior uncertainty estimates of the dynamics. To fit our models, we leverage a modified learning objective which improves the estimation accuracy of kernel hyperparameters compared to previous GP-SDE fitting approaches. We apply our method to synthetic data and data recorded in two neuroscience experiments and demonstrate favorable performance in comparison to the rSLDS.

Khalid Rafiq, Wenjing Liao, Aditya G. Nair

We introduce Flexi-VAE, a data-driven framework for efficient single-shot forecasting of nonlinear parametric partial differential equations (PDEs), eliminating the need for iterative time-stepping while maintaining high accuracy and stability. Flexi-VAE incorporates a neural propagator that advances latent representations forward in time, aligning latent evolution with physical state reconstruction in a variational autoencoder setting. We evaluate two propagation strategies, the Direct Concatenation Propagator (DCP) and the Positional Encoding Propagator (PEP), and demonstrate, through representation-theoretic analysis, that DCP offers superior long-term generalization by fostering disentangled and physically meaningful latent spaces. Geometric diagnostics, including Jacobian spectral analysis, reveal that propagated latent states reside in regions of lower decoder sensitivity and more stable local geometry than those derived via direct encoding, enhancing robustness for long-horizon predictions. We validate Flexi-VAE on canonical PDE benchmarks, the 1D viscous Burgers equation and the 2D advection-diffusion equation, achieving accurate forecasts across wide parametric ranges. The model delivers over 50x CPU and 90x GPU speedups compared to autoencoder-LSTM baselines for large temporal shifts. These results position Flexi-VAE as a scalable and interpretable surrogate modeling tool for accelerating high-fidelity simulations in computational fluid dynamics (CFD) and other parametric PDE-driven applications, with extensibility to higher-dimensional and more complex systems.