Dominik Nickel

Jinho Kim, Marcel Dominik Nickel, Florian Knoll

The purpose of this study was to accelerate MR cholangiopancreatography (MRCP) acquisitions using deep learning-based (DL) reconstruction at 3T and 0.55T. A total of 35 healthy volunteers underwent conventional two-fold accelerated MRCP scans at field strengths of 3T and 0.55T. We trained DL reconstructions using two different training strategies, supervised (SV) and self-supervised (SSV), with retrospectively six-fold undersampled data obtained at 3T. We then evaluated the DL reconstructions against standard techniques, parallel imaging (PI) and compressed sensing (CS), focusing on peak signal-to-noise ratio (PSNR) and structural similarity (SSIM) as metrics. We also tested DL reconstructions with prospectively accelerated acquisitions and evaluated their robustness when changing fields strengths from 3T to 0.55T. DL reconstructions demonstrated a reduction in average acquisition time from 599/542 to 255/180 seconds for MRCP at 3T/0.55T. In both retrospective and prospective undersampling, PSNR and SSIM of DL reconstructions were higher than those of PI and CS. At the same time, DL reconstructions preserved the image quality of undersampled data, including sharpness and the visibility of hepatobiliary ducts. In addition, both DL approaches produced high-quality reconstructions at 0.55T. In summary, DL reconstructions trained for highly accelerated MRCP enabled a reduction in acquisition time by a factor of 2.4/3.0 at 3T/0.55T while maintaining the image quality of conventional acquisitions.

Fasil Gadjimuradov, Thomas Benkert, Marcel Dominik Nickel et al.

Purpose: To develop an algorithm for robust partial Fourier (PF) reconstruction applicable to diffusion-weighted (DW) images with non-smooth phase variations. Methods: Based on an unrolled proximal splitting algorithm, a neural network architecture is derived which alternates between data consistency operations and regularization implemented by recurrent convolutions. In order to exploit correlations, multiple repetitions of the same slice are jointly reconstructed under consideration of permutation-equivariance. The algorithm is trained on DW liver data of 60 volunteers and evaluated on retrospectively and prospectively sub-sampled data of different anatomies and resolutions. Results: The proposed method is able to significantly outperform conventional PF techniques on retrospectively sub-sampled data in terms of quantitative measures as well as perceptual image quality. In this context, joint reconstruction of repetitions as well as the particular type of recurrent network unrolling are found to be beneficial with respect to reconstruction quality. On prospectively PF-sampled data, the proposed method enables DW imaging with higher signal without sacrificing image resolution or introducing additional artifacts. Alternatively, it can be used to counter the TE increase in acquisitions with higher resolution. Further, generalizability can be shown to prospective brain data exhibiting anatomies and contrasts not present in the training set. Conclusion: This work demonstrates that robust PF reconstruction of DW data is feasible even at strong PF factors in anatomies prone to phase variations. Since the proposed method does not rely on smoothness priors of the phase but uses learned recurrent convolutions instead, artifacts of conventional PF methods can be avoided.

Matthew J. Muckley, Bruno Riemenschneider, Alireza Radmanesh et al.

Accelerating MRI scans is one of the principal outstanding problems in the MRI research community. Towards this goal, we hosted the second fastMRI competition targeted towards reconstructing MR images with subsampled k-space data. We provided participants with data from 7,299 clinical brain scans (de-identified via a HIPAA-compliant procedure by NYU Langone Health), holding back the fully-sampled data from 894 of these scans for challenge evaluation purposes. In contrast to the 2019 challenge, we focused our radiologist evaluations on pathological assessment in brain images. We also debuted a new Transfer track that required participants to submit models evaluated on MRI scanners from outside the training set. We received 19 submissions from eight different groups. Results showed one team scoring best in both SSIM scores and qualitative radiologist evaluations. We also performed analysis on alternative metrics to mitigate the effects of background noise and collected feedback from the participants to inform future challenges. Lastly, we identify common failure modes across the submissions, highlighting areas of need for future research in the MRI reconstruction community.