Kwan‐Liu Ma

Takanori Fujiwara, Yun-Hsin Kuo, Anders Ynnerman et al.

Dimensionality reduction (DR) plays a vital role in the visual analysis of high-dimensional data. One main aim of DR is to reveal hidden patterns that lie on intrinsic low-dimensional manifolds. However, DR often overlooks important patterns when the manifolds are distorted or masked by certain influential data attributes. This paper presents a feature learning framework, FEALM, designed to generate a set of optimized data projections for nonlinear DR in order to capture important patterns in the hidden manifolds. These projections produce maximally different nearest-neighbor graphs so that resultant DR outcomes are significantly different. To achieve such a capability, we design an optimization algorithm as well as introduce a new graph dissimilarity measure, named neighbor-shape dissimilarity. Additionally, we develop interactive visualizations to assist comparison of obtained DR results and interpretation of each DR result. We demonstrate FEALM's effectiveness through experiments and case studies using synthetic and real-world datasets.

Yiran Li, Junpeng Wang, Xin Dai et al.

Vision transformer (ViT) expands the success of transformer models from sequential data to images. The model decomposes an image into many smaller patches and arranges them into a sequence. Multi-head self-attentions are then applied to the sequence to learn the attention between patches. Despite many successful interpretations of transformers on sequential data, little effort has been devoted to the interpretation of ViTs, and many questions remain unanswered. For example, among the numerous attention heads, which one is more important? How strong are individual patches attending to their spatial neighbors in different heads? What attention patterns have individual heads learned? In this work, we answer these questions through a visual analytics approach. Specifically, we first identify what heads are more important in ViTs by introducing multiple pruning-based metrics. Then, we profile the spatial distribution of attention strengths between patches inside individual heads, as well as the trend of attention strengths across attention layers. Third, using an autoencoder-based learning solution, we summarize all possible attention patterns that individual heads could learn. Examining the attention strengths and patterns of the important heads, we answer why they are important. Through concrete case studies with experienced deep learning experts on multiple ViTs, we validate the effectiveness of our solution that deepens the understanding of ViTs from head importance, head attention strength, and head attention pattern.

Hyeon Jeon, Yun-Hsin Kuo, Michaël Aupetit et al.

A common way to evaluate the reliability of dimensionality reduction (DR) embeddings is to quantify how well labeled classes form compact, mutually separated clusters in the embeddings. This approach is based on the assumption that the classes stay as clear clusters in the original high-dimensional space. However, in reality, this assumption can be violated; a single class can be fragmented into multiple separated clusters, and multiple classes can be merged into a single cluster. We thus cannot always assure the credibility of the evaluation using class labels. In this paper, we introduce two novel quality measures -- Label-Trustworthiness and Label-Continuity (Label-T&C) -- advancing the process of DR evaluation based on class labels. Instead of assuming that classes are well-clustered in the original space, Label-T&C work by (1) estimating the extent to which classes form clusters in the original and embedded spaces and (2) evaluating the difference between the two. A quantitative evaluation showed that Label-T&C outperform widely used DR evaluation measures (e.g., Trustworthiness and Continuity, Kullback-Leibler divergence) in terms of the accuracy in assessing how well DR embeddings preserve the cluster structure, and are also scalable. Moreover, we present case studies demonstrating that Label-T&C can be successfully used for revealing the intrinsic characteristics of DR techniques and their hyperparameters.

Qi Wu, Joseph A. Insley, Victor A. Mateevitsi et al.

Implicit neural representations (INRs) have emerged as a powerful tool for compressing large-scale volume data. This opens up new possibilities for in situ visualization. However, the efficient application of INRs to distributed data remains an underexplored area. In this work, we develop a distributed volumetric neural representation and optimize it for in situ visualization. Our technique eliminates data exchanges between processes, achieving state-of-the-art compression speed, quality and ratios. Our technique also enables the implementation of an efficient strategy for caching large-scale simulation data in high temporal frequencies, further facilitating the use of reactive in situ visualization in a wider range of scientific problems. We integrate this system with the Ascent infrastructure and evaluate its performance and usability using real-world simulations.

Hsiao-Ying Lu, Takanori Fujiwara, Ming-Yi Chang et al.

Multivariate networks are commonly found in real-world data-driven applications. Uncovering and understanding the relations of interest in multivariate networks is not a trivial task. This paper presents a visual analytics workflow for studying multivariate networks to extract associations between different structural and semantic characteristics of the networks (e.g., what are the combinations of attributes largely relating to the density of a social network?). The workflow consists of a neural-network-based learning phase to classify the data based on the chosen input and output attributes, a dimensionality reduction and optimization phase to produce a simplified set of results for examination, and finally an interpreting phase conducted by the user through an interactive visualization interface. A key part of our design is a composite variable construction step that remodels nonlinear features obtained by neural networks into linear features that are intuitive to interpret. We demonstrate the capabilities of this workflow with multiple case studies on networks derived from social media usage and also evaluate the workflow with qualitative feedback from experts.

Yiran Li, Junpeng Wang, Prince Aboagye et al.

Recent advancements in pre-trained large-scale language-image models have ushered in a new era of visual comprehension, offering a significant leap forward. These breakthroughs have proven particularly instrumental in addressing long-standing challenges that were previously daunting. Leveraging these innovative techniques, this paper tackles two well-known issues within the realm of visual analytics: (1) the efficient exploration of large-scale image datasets and identification of potential data biases within them; (2) the evaluation of image captions and steering of their generation process. On the one hand, by visually examining the captions automatically generated from language-image models for an image dataset, we gain deeper insights into the semantic underpinnings of the visual contents, unearthing data biases that may be entrenched within the dataset. On the other hand, by depicting the association between visual contents and textual captions, we expose the weaknesses of pre-trained language-image models in their captioning capability and propose an interactive interface to steer caption generation. The two parts have been coalesced into a coordinated visual analytics system, fostering mutual enrichment of visual and textual elements. We validate the effectiveness of the system with domain practitioners through concrete case studies with large-scale image datasets.

Shilpika, Bethany Lusch, Murali Emani et al.

The ability to monitor and interpret of hardware system events and behaviors are crucial to improving the robustness and reliability of these systems, especially in a supercomputing facility. The growing complexity and scale of these systems demand an increase in monitoring data collected at multiple fidelity levels and varying temporal resolutions. In this work, we aim to build a holistic analytical system that helps make sense of such massive data, mainly the hardware logs, job logs, and environment logs collected from disparate subsystems and components of a supercomputer system. This end-to-end log analysis system, coupled with visual analytics support, allows users to glean and promptly extract supercomputer usage and error patterns at varying temporal and spatial resolutions. We use multiresolution dynamic mode decomposition (mrDMD), a technique that depicts high-dimensional data as correlated spatial-temporal variations patterns or modes, to extract variation patterns isolated at specified frequencies. Our improvements to the mrDMD algorithm help promptly reveal useful information in the massive environment log dataset, which is then associated with the processed hardware and job log datasets using our visual analytics system. Furthermore, our system can identify the usage and error patterns filtered at user, project, and subcomponent levels. We exemplify the effectiveness of our approach with two use scenarios with the Cray XC40 supercomputer.

Yiran Li, Junpeng Wang, Takanori Fujiwara et al.

Adversarial attacks on a convolutional neural network (CNN) -- injecting human-imperceptible perturbations into an input image -- could fool a high-performance CNN into making incorrect predictions. The success of adversarial attacks raises serious concerns about the robustness of CNNs, and prevents them from being used in safety-critical applications, such as medical diagnosis and autonomous driving. Our work introduces a visual analytics approach to understanding adversarial attacks by answering two questions: (1) which neurons are more vulnerable to attacks and (2) which image features do these vulnerable neurons capture during the prediction? For the first question, we introduce multiple perturbation-based measures to break down the attacking magnitude into individual CNN neurons and rank the neurons by their vulnerability levels. For the second, we identify image features (e.g., cat ears) that highly stimulate a user-selected neuron to augment and validate the neuron's responsibility. Furthermore, we support an interactive exploration of a large number of neurons by aiding with hierarchical clustering based on the neurons' roles in the prediction. To this end, a visual analytics system is designed to incorporate visual reasoning for interpreting adversarial attacks. We validate the effectiveness of our system through multiple case studies as well as feedback from domain experts.

David Bauer, Qi Wu, Kwan-Liu Ma

Volume data is found in many important scientific and engineering applications. Rendering this data for visualization at high quality and interactive rates for demanding applications such as virtual reality is still not easily achievable even using professional-grade hardware. We introduce FoVolNet -- a method to significantly increase the performance of volume data visualization. We develop a cost-effective foveated rendering pipeline that sparsely samples a volume around a focal point and reconstructs the full-frame using a deep neural network. Foveated rendering is a technique that prioritizes rendering computations around the user's focal point. This approach leverages properties of the human visual system, thereby saving computational resources when rendering data in the periphery of the user's field of vision. Our reconstruction network combines direct and kernel prediction methods to produce fast, stable, and perceptually convincing output. With a slim design and the use of quantization, our method outperforms state-of-the-art neural reconstruction techniques in both end-to-end frame times and visual quality. We conduct extensive evaluations of the system's rendering performance, inference speed, and perceptual properties, and we provide comparisons to competing neural image reconstruction techniques. Our test results show that FoVolNet consistently achieves significant time saving over conventional rendering while preserving perceptual quality.

Qi Wu, David Bauer, Michael J. Doyle et al.

Neural networks have shown great potential in compressing volume data for visualization. However, due to the high cost of training and inference, such volumetric neural representations have thus far only been applied to offline data processing and non-interactive rendering. In this paper, we demonstrate that by simultaneously leveraging modern GPU tensor cores, a native CUDA neural network framework, and a well-designed rendering algorithm with macro-cell acceleration, we can interactively ray trace volumetric neural representations (10-60fps). Our neural representations are also high-fidelity (PSNR > 30dB) and compact (10-1000x smaller). Additionally, we show that it is possible to fit the entire training step inside a rendering loop and skip the pre-training process completely. To support extreme-scale volume data, we also develop an efficient out-of-core training strategy, which allows our volumetric neural representation training to potentially scale up to terascale using only an NVIDIA RTX 3090 workstation.

Xiwei Xuan, Ziquan Deng, Hsuan-Tien Lin et al.

Researchers have proposed various methods for visually interpreting the Convolutional Neural Network (CNN) via saliency maps, which include Class-Activation-Map (CAM) based approaches as a leading family. However, in terms of the internal design logic, existing CAM-based approaches often overlook the causal perspective that answers the core "why" question to help humans understand the explanation. Additionally, current CNN explanations lack the consideration of both necessity and sufficiency, two complementary sides of a desirable explanation. This paper presents a causality-driven framework, SUNY, designed to rationalize the explanations toward better human understanding. Using the CNN model's input features or internal filters as hypothetical causes, SUNY generates explanations by bi-directional quantifications on both the necessary and sufficient perspectives. Extensive evaluations justify that SUNY not only produces more informative and convincing explanations from the angles of necessity and sufficiency, but also achieves performances competitive to other approaches across different CNN architectures over large-scale datasets, including ILSVRC2012 and CUB-200-2011.

Qi Wu, David Bauer, Yuyang Chen et al.

Implicit Neural Representations (INRs) have recently exhibited immense potential in the field of scientific visualization for both data generation and visualization tasks. However, these representations often consist of large multi-layer perceptrons (MLPs), necessitating millions of operations for a single forward pass, consequently hindering interactive visual exploration. While reducing the size of the MLPs and employing efficient parametric encoding schemes can alleviate this issue, it compromises generalizability for unseen parameters, rendering it unsuitable for tasks such as temporal super-resolution. In this paper, we introduce HyperINR, a novel hypernetwork architecture capable of directly predicting the weights for a compact INR. By harnessing an ensemble of multiresolution hash encoding units in unison, the resulting INR attains state-of-the-art inference performance (up to 100x higher inference bandwidth) and can support interactive photo-realistic volume visualization. Additionally, by incorporating knowledge distillation, exceptional data and visualization generation quality is achieved, making our method valuable for real-time parameter exploration. We validate the effectiveness of the HyperINR architecture through a comprehensive ablation study. We showcase the versatility of HyperINR across three distinct scientific domains: novel view synthesis, temporal super-resolution of volume data, and volume rendering with dynamic global shadows. By simultaneously achieving efficiency and generalizability, HyperINR paves the way for applying INR in a wider array of scientific visualization applications.

David Bauer, Qi Wu, Kwan-Liu Ma

Volume data is commonly found in many scientific disciplines, like medicine, physics, and biology. Experts rely on robust scientific visualization techniques to extract valuable insights from the data. Recent years have shown path tracing to be the preferred approach for volumetric rendering, given its high levels of realism. However, real-time volumetric path tracing often suffers from stochastic noise and long convergence times, limiting interactive exploration. In this paper, we present a novel method to enable real-time global illumination for volume data visualization. We develop Photon Field Networks -- a phase-function-aware, multi-light neural representation of indirect volumetric global illumination. The fields are trained on multi-phase photon caches that we compute a priori. Training can be done within seconds, after which the fields can be used in various rendering tasks. To showcase their potential, we develop a custom neural path tracer, with which our photon fields achieve interactive framerates even on large datasets. We conduct in-depth evaluations of the method's performance, including visual quality, stochastic noise, inference and rendering speeds, and accuracy regarding illumination and phase function awareness. Results are compared to ray marching, path tracing and photon mapping. Our findings show that Photon Field Networks can faithfully represent indirect global illumination across the phase spectrum while exhibiting less stochastic noise and rendering at a significantly faster rate than traditional methods.

Yu-Chia Huang, Juntong Chen, Dongyu Liu et al.

Understanding and distinguishing temporal patterns in time series data is essential for scientific discovery and decision-making. For example, in biomedical research, uncovering meaningful patterns in physiological signals can improve diagnosis, risk assessment, and patient outcomes. However, existing methods for time series pattern discovery face major challenges, including high computational complexity, limited interpretability, and difficulty in capturing meaningful temporal structures. To address these gaps, we introduce a novel learning framework that jointly trains two Transformer models using complementary time series representations: shapelet-based representations to capture localized temporal structures and traditional feature engineering to encode statistical properties. The learned shapelets serve as interpretable signatures that differentiate time series across classification labels. Additionally, we develop a visual analytics system -- SigTIme -- with coordinated views to facilitate exploration of time series signatures from multiple perspectives, aiding in useful insights generation. We quantitatively evaluate our learning framework on eight publicly available datasets and one proprietary clinical dataset. Additionally, we demonstrate the effectiveness of our system through two usage scenarios along with the domain experts: one involving public ECG data and the other focused on preterm labor analysis.

Xiwei Xuan, Jorge Piazentin Ono, Liang Gou et al.

Data slice finding is an emerging technique for validating machine learning (ML) models by identifying and analyzing subgroups in a dataset that exhibit poor performance, often characterized by distinct feature sets or descriptive metadata. However, in the context of validating vision models involving unstructured image data, this approach faces significant challenges, including the laborious and costly requirement for additional metadata and the complex task of interpreting the root causes of underperformance. To address these challenges, we introduce AttributionScanner, an innovative human-in-the-loop Visual Analytics (VA) system, designed for metadata-free data slice finding. Our system identifies interpretable data slices that involve common model behaviors and visualizes these patterns through an Attribution Mosaic design. Our interactive interface provides straightforward guidance for users to detect, interpret, and annotate predominant model issues, such as spurious correlations (model biases) and mislabeled data, with minimal effort. Additionally, it employs a cutting-edge model regularization technique to mitigate the detected issues and enhance the model's performance. The efficacy of AttributionScanner is demonstrated through use cases involving two benchmark datasets, with qualitative and quantitative evaluations showcasing its substantial effectiveness in vision model validation, ultimately leading to more reliable and accurate models.

Hsiao-Ying Lu, Kwan-Liu Ma

Cancer treatment outcomes are influenced not only by clinical and demographic factors but also by the collaboration of healthcare teams. However, prior work has largely overlooked the potential role of human collaboration in shaping patient survival. This paper presents an applied AI approach to uncovering the impact of healthcare professionals' (HCPs) collaboration-captured through electronic health record (EHR) systems-on cancer patient outcomes. We model EHR-mediated HCP interactions as networks and apply machine learning techniques to detect predictive signals of patient survival embedded in these collaborations. Our models are cross validated to ensure generalizability, and we explain the predictions by identifying key network traits associated with improved outcomes. Importantly, clinical experts and literature validate the relevance of the identified crucial collaboration traits, reinforcing their potential for real-world applications. This work contributes to a practical workflow for leveraging digital traces of collaboration and AI to assess and improve team-based healthcare. The approach is potentially transferable to other domains involving complex collaboration and offers actionable insights to support data-informed interventions in healthcare delivery.

Xiwei Xuan, Xiaoqi Wang, Wenbin He et al.

The advances in multi-modal foundation models (FMs) (e.g., CLIP and LLaVA) have facilitated the auto-labeling of large-scale datasets, enhancing model performance in challenging downstream tasks such as open-vocabulary object detection and segmentation. However, the quality of FM-generated labels is less studied as existing approaches focus more on data quantity over quality. This is because validating large volumes of data without ground truth presents a considerable challenge in practice. Existing methods typically rely on limited metrics to identify problematic data, lacking a comprehensive perspective, or apply human validation to only a small data fraction, failing to address the full spectrum of potential issues. To overcome these challenges, we introduce VISTA, a visual analytics framework that improves data quality to enhance the performance of multi-modal models. Targeting the complex and demanding domain of open-vocabulary image segmentation, VISTA integrates multi-phased data validation strategies with human expertise, enabling humans to identify, understand, and correct hidden issues within FM-generated labels. Through detailed use cases on two benchmark datasets and expert reviews, we demonstrate VISTA's effectiveness from both quantitative and qualitative perspectives.

Hamid Gadirov, Qi Wu, David Bauer et al.

We present HyperFLINT (Hypernetwork-based FLow estimation and temporal INTerpolation), a novel deep learning-based approach for estimating flow fields, temporally interpolating scalar fields, and facilitating parameter space exploration in spatio-temporal scientific ensemble data. This work addresses the critical need to explicitly incorporate ensemble parameters into the learning process, as traditional methods often neglect these, limiting their ability to adapt to diverse simulation settings and provide meaningful insights into the data dynamics. HyperFLINT introduces a hypernetwork to account for simulation parameters, enabling it to generate accurate interpolations and flow fields for each timestep by dynamically adapting to varying conditions, thereby outperforming existing parameter-agnostic approaches. The architecture features modular neural blocks with convolutional and deconvolutional layers, supported by a hypernetwork that generates weights for the main network, allowing the model to better capture intricate simulation dynamics. A series of experiments demonstrates HyperFLINT's significantly improved performance in flow field estimation and temporal interpolation, as well as its potential in enabling parameter space exploration, offering valuable insights into complex scientific ensembles.

Weichen Dai, Kangcheng Ma, Jiaxin Wang et al.

Representing scenes from multi-view images is a crucial task in computer vision with extensive applications. However, inherent photometric distortions in the camera imaging can significantly degrade image quality. Without accounting for these distortions, the 3D scene representation may inadvertently incorporate erroneous information unrelated to the scene, diminishing the quality of the representation. In this paper, we propose a novel 3D scene-camera representation with joint camera photometric optimization. By introducing internal and external photometric model, we propose a full photometric model and corresponding camera representation. Based on simultaneously optimizing the parameters of the camera representation, the proposed method effectively separates scene-unrelated information from the 3D scene representation. Additionally, during the optimization of the photometric parameters, we introduce a depth regularization to prevent the 3D scene representation from fitting scene-unrelated information. By incorporating the camera model as part of the mapping process, the proposed method constructs a complete map that includes both the scene radiance field and the camera photometric model. Experimental results demonstrate that the proposed method can achieve high-quality 3D scene representations, even under conditions of imaging degradation, such as vignetting and dirt.

Hyeon Jeon, Hyunwook Lee, Yun-Hsin Kuo et al.

Visual analytics using dimensionality reduction (DR) can easily be unreliable for various reasons, e.g., inherent distortions in representing the original data. The literature has thus proposed a wide range of methodologies to make DR-based visual analytics reliable. However, the diversity and extensiveness of the literature can leave novice analysts and researchers uncertain about where to begin and proceed. To address this problem, we propose a guide for reading papers for reliable visual analytics with DR. Relying on the previous classification of the relevant literature, our guide helps both practitioners to (1) assess their current DR expertise and (2) identify papers that will further enhance their understanding. Interview studies with three experts in DR and data visualizations validate the significance, comprehensiveness, and usefulness of our guide.

Hsiao-Ying Lu, Yiran Li, Ujwal Pratap Krishna Kaluvakolanu Thyagarajan et al.

Graph Neural Networks (GNNs) achieve outstanding performance across graph-based tasks but remain difficult to interpret. In this paper, we revisit foundational assumptions underlying model-level explanation methods for GNNs, namely: (1) maximizing classification confidence yields representative explanations, (2) a single explanation suffices for an entire class of graphs, and (3) explanations are inherently trustworthy. We identify pitfalls resulting from these assumptions: methods that optimize for classification confidence may overlook partially learned patterns; topological diversity across graph subsets within the same class is often underrepresented; and explanations alone offer limited support for building user trust when applied to new datasets or models. This paper introduces GNNAnatomy, a distillation-based method designed to generate explanations while avoiding these pitfalls. GNNAnatomy first characterizes graph topology using graphlets, a set of fundamental substructures. We then train a transparent multilayer perceptron surrogate to directly approximate GNN predictions based on the graphlet representations. By analyzing the weights assigned to each graphlet, we identify the most discriminative topologies, which serve as GNN explanations. To account for structural diversity within a class, GNNAnatomy generates explanations at the required granularity through an interface that supports human-AI teaming. This interface helps users identify subsets of graphs where distinct critical substructures drive class differentiation, enabling multi-grained explanations. Additionally, by enabling exploration and linking explanations back to input graphs, the interface fosters greater transparency and trust. We evaluate GNNAnatomy on both synthetic and real-world datasets through quantitative metrics and qualitative comparisons with state-of-the-art model-level explainable GNN methods.

Ziquan Deng, Xiwei Xuan, Kwan-Liu Ma et al.

Time series anomaly detection is a critical machine learning task for numerous applications, such as finance, healthcare, and industrial systems. However, even high-performing models may exhibit potential issues such as biases, leading to unreliable outcomes and misplaced confidence. While model explanation techniques, particularly visual explanations, offer valuable insights by elucidating model attributions of their decision, many limitations still exist -- They are primarily instance-based and not scalable across the dataset, and they provide one-directional information from the model to the human side, lacking a mechanism for users to address detected issues. To fulfill these gaps, we introduce HILAD, a novel framework designed to foster a dynamic and bidirectional collaboration between humans and AI for enhancing anomaly detection models in time series. Through our visual interface, HILAD empowers domain experts to detect, interpret, and correct unexpected model behaviors at scale. Our evaluation through user studies with two models and three time series datasets demonstrates the effectiveness of HILAD, which fosters a deeper model understanding, immediate corrective actions, and model reliability enhancement.

Hsiao-Ying Lu, Yiran Li, Kwan-Liu Ma

Communication among healthcare professionals (HCPs) is crucial for the quality of patient treatment. Surrounding each patient's treatment, communication among HCPs can be examined as temporal networks, constructed from Electronic Health Record (EHR) access logs. This paper introduces a visual analytics system designed to study the effectiveness and efficiency of temporal communication networks mediated by the EHR system. We present a method that associates network measures with patient survival outcomes and devises effectiveness metrics based on these associations. To analyze communication efficiency, we extract the latencies and frequencies of EHR accesses. Our visual analytics system is designed to assist in inspecting and understanding the composed communication effectiveness metrics and to enable the exploration of communication efficiency by encoding latencies and frequencies in an information flow diagram. We demonstrate and evaluate our system through multiple case studies and an expert review.

Yun-Hsin Kuo, Takanori Fujiwara, Charles C. -K. Chou et al.

Analyzing air pollution data is challenging as there are various analysis focuses from different aspects: feature (what), space (where), and time (when). As in most geospatial analysis problems, besides high-dimensional features, the temporal and spatial dependencies of air pollution induce the complexity of performing analysis. Machine learning methods, such as dimensionality reduction, can extract and summarize important information of the data to lift the burden of understanding such a complicated environment. In this paper, we present a methodology that utilizes multiple machine learning methods to uniformly explore these aspects. With this methodology, we develop a visual analytic system that supports a flexible analysis workflow, allowing domain experts to freely explore different aspects based on their analysis needs. We demonstrate the capability of our system and analysis workflow supporting a variety of analysis tasks with multiple use cases.

David Bauer, Chengbo Zheng, Oh-Hyun Kwon et al.

Visualization plays a vital role in making sense of complex network data. Recent studies have shown the potential of using extended reality (XR) for the immersive exploration of networks. The additional depth cues offered by XR help users perform better in certain tasks when compared to using traditional desktop setups. However, prior works on immersive network visualization rely on mostly static graph layouts to present the data to the user. This poses a problem since there is no optimal layout for all possible tasks. The choice of layout heavily depends on the type of network and the task at hand. We introduce a multi-layout approach that allows users to effectively explore hierarchical network data in immersive space. The resulting system leverages different layout techniques and interactions to efficiently use the available space in VR and provide an optimal view of the data depending on the task and the level of detail required to solve it. To evaluate our approach, we have conducted a user study comparing it against the state of the art for immersive network visualization. Participants performed tasks at varying spatial scopes. The results show that our approach outperforms the baseline in spatially focused scenarios as well as when the whole network needs to be considered.

Xiwei Xuan, Xiaoyu Zhang, Oh-Hyun Kwon et al.

The rapid development of Convolutional Neural Networks (CNNs) in recent years has triggered significant breakthroughs in many machine learning (ML) applications. The ability to understand and compare various CNN models available is thus essential. The conventional approach with visualizing each model's quantitative features, such as classification accuracy and computational complexity, is not sufficient for a deeper understanding and comparison of the behaviors of different models. Moreover, most of the existing tools for assessing CNN behaviors only support comparison between two models and lack the flexibility of customizing the analysis tasks according to user needs. This paper presents a visual analytics system, VAC-CNN (Visual Analytics for Comparing CNNs), that supports the in-depth inspection of a single CNN model as well as comparative studies of two or more models. The ability to compare a larger number of (e.g., tens of) models especially distinguishes our system from previous ones. With a carefully designed model visualization and explaining support, VAC-CNN facilitates a highly interactive workflow that promptly presents both quantitative and qualitative information at each analysis stage. We demonstrate VAC-CNN's effectiveness for assisting novice ML practitioners in evaluating and comparing multiple CNN models through two use cases and one preliminary evaluation study using the image classification tasks on the ImageNet dataset.

Oh-Hyun Kwon, Chiun-How Kao, Chun-houh Chen et al.

Depending on the node ordering, an adjacency matrix can highlight distinct characteristics of a graph. Deriving a "proper" node ordering is thus a critical step in visualizing a graph as an adjacency matrix. Users often try multiple matrix reorderings using different methods until they find one that meets the analysis goal. However, this trial-and-error approach is laborious and disorganized, which is especially challenging for novices. This paper presents a technique that enables users to effortlessly find a matrix reordering they want. Specifically, we design a generative model that learns a latent space of diverse matrix reorderings of the given graph. We also construct an intuitive user interface from the learned latent space by creating a map of various matrix reorderings. We demonstrate our approach through quantitative and qualitative evaluations of the generated reorderings and learned latent spaces. The results show that our model is capable of learning a latent space of diverse matrix reorderings. Most existing research in this area generally focused on developing algorithms that can compute "better" matrix reorderings for particular circumstances. This paper introduces a fundamentally new approach to matrix visualization of a graph, where a machine learning model learns to generate diverse matrix reorderings of a graph.

Yiran Li, Erin Musabandesu, Takanori Fujiwara et al.

The optimization of water distribution systems (WDSs) is vital to minimize energy costs required for their operations. A principal approach taken by researchers is identifying an optimal scheme for water pump controls through examining computational simulations of WDSs. However, due to a large number of possible control combinations and the complexity of WDS simulations, it remains non-trivial to identify the best pump controls by reviewing the simulation results. To address this problem, we design a visual analytics system that helps understand relationships between simulation inputs and outputs towards better optimization. Our system incorporates interpretable machine learning as well as multiple linked visualizations to capture essential input-output relationships from complex WDS simulations. We demonstrate our system's effectiveness through a practical case study and evaluate its usability through expert reviews. Our results show that our system can lessen the burden of analysis and assist in determining optimal operating schemes.

Takanori Fujiwara, Xinhai Wei, Jian Zhao et al.

Finding the similarities and differences between groups of datasets is a fundamental analysis task. For high-dimensional data, dimensionality reduction (DR) methods are often used to find the characteristics of each group. However, existing DR methods provide limited capability and flexibility for such comparative analysis as each method is designed only for a narrow analysis target, such as identifying factors that most differentiate groups. This paper presents an interactive DR framework where we integrate our new DR method, called ULCA (unified linear comparative analysis), with an interactive visual interface. ULCA unifies two DR schemes, discriminant analysis and contrastive learning, to support various comparative analysis tasks. To provide flexibility for comparative analysis, we develop an optimization algorithm that enables analysts to interactively refine ULCA results. Additionally, the interactive visualization interface facilitates interpretation and refinement of the ULCA results. We evaluate ULCA and the optimization algorithm to show their efficiency as well as present multiple case studies using real-world datasets to demonstrate the usefulness of this framework.

Jian Zhao, Shenyu Xu, Senthil Chandrasegaran et al.

Visual data storytelling is gaining importance as a means of presenting data-driven information or analysis results, especially to the general public. This has resulted in design principles being proposed for data-driven storytelling, and new authoring tools being created to aid such storytelling. However, data analysts typically lack sufficient background in design and storytelling to make effective use of these principles and authoring tools. To assist this process, we present ChartStory for crafting data stories from a collection of user-created charts, using a style akin to comic panels to imply the underlying sequence and logic of data-driven narratives. Our approach is to operationalize established design principles into an advanced pipeline which characterizes charts by their properties and similarity, and recommends ways to partition, layout, and caption story pieces to serve a narrative. ChartStory also augments this pipeline with intuitive user interactions for visual refinement of generated data comics. We extensively and holistically evaluate ChartStory via a trio of studies. We first assess how the tool supports data comic creation in comparison to a manual baseline tool. Data comics from this study are subsequently compared and evaluated to ChartStory's automated recommendations by a team of narrative visualization practitioners. This is followed by a pair of interview studies with data scientists using their own datasets and charts who provide an additional assessment of the system. We find that ChartStory provides cogent recommendations for narrative generation, resulting in data comics that compare favorably to manually-created ones.

Annie Preston, Kwan-Liu Ma

Environmental sensors provide crucial data for understanding our surroundings. For example, air quality maps based on sensor readings help users make decisions to mitigate the effects of pollution on their health. Standard maps show readings from individual sensors or colored contours indicating estimated pollution levels. However, showing a single estimate may conceal uncertainty and lead to underestimation of risk, while showing sensor data yields varied interpretations. We present several visualizations of uncertainty in air quality maps, including a frequency-framing "dotmap" and small multiples, and we compare them with standard contour and sensor-based maps. In a user study, we find that including uncertainty in maps has a significant effect on how much users would choose to reduce physical activity, and that people make more cautious decisions when using uncertainty-aware maps. Additionally, we analyze think-aloud transcriptions from the experiment to understand more about how the representation of uncertainty influences people's decision-making. Our results suggest ways to design maps of sensor data that can encourage certain types of reasoning, yield more consistent responses, and convey risk better than standard maps.

Fnu Shilpika, Takanori Fujiwara, Naohisa Sakamoto et al.

Many real-world applications involve analyzing time-dependent phenomena, which are intrinsically functional, consisting of curves varying over a continuum (e.g., time). When analyzing continuous data, functional data analysis (FDA) provides substantial benefits, such as the ability to study the derivatives and to restrict the ordering of data. However, continuous data inherently has infinite dimensions, and for a long time series, FDA methods often suffer from high computational costs. The analysis problem becomes even more challenging when updating the FDA results for continuously arriving data. In this paper, we present a visual analytics approach for monitoring and reviewing time series data streamed from a hardware system with a focus on identifying outliers by using FDA. To perform FDA while addressing the computational problem, we introduce new incremental and progressive algorithms that promptly generate the magnitude-shape (MS) plot, which conveys both the functional magnitude and shape outlyingness of time series data. In addition, by using an MS plot in conjunction with an FDA version of principal component analysis, we enhance the analyst's ability to investigate the visually-identified outliers. We illustrate the effectiveness of our approach with two use scenarios using real-world datasets. The resulting tool is evaluated by industry experts using real-world streaming datasets.

Chuan Wang, Kwan-Liu Ma

Deep Recurrent Neural Networks (RNN) continues to find success in predictive decision-making with temporal event sequences. Recent studies have shown the importance and practicality of visual analytics in interpreting deep learning models for real-world applications. However, very limited work enables interactions with deep learning models and guides practitioners to form hypotheticals towards the desired prediction outcomes, especially for sequence prediction. Specifically, no existing work has addressed the what-if analysis and value perturbation along different time-steps for sequence outcome prediction. We present a model-agnostic visual analytics tool, HypperSteer, that steers hypothetical testing and allows users to perturb data for sequence predictions interactively. We showcase how HypperSteer helps in steering patient data to achieve desired treatment outcomes and discuss how HypperSteer can serve as a comprehensive solution for other practical scenarios.

Chaoqing Xu, Tyson Neuroth, Takanori Fujiwara et al.

Diffusion tensor imaging (DTI) has been used to study the effects of neurodegenerative diseases on neural pathways, which may lead to more reliable and early diagnosis of these diseases as well as a better understanding of how they affect the brain. We introduce an intelligent visual analytics system for studying patient groups based on their labeled DTI fiber tract data and corresponding statistics. The system's AI-augmented interface guides the user through an organized and holistic analysis space, including the statistical feature space, the physical space, and the space of patients over different groups. We use a custom machine learning pipeline to help narrow down this large analysis space, and then explore it pragmatically through a range of linked visualizations. We conduct several case studies using real data from the research database of Parkinson's Progression Markers Initiative.

Tarik Crnovrsanin, Shilpika, Senthil Chandrasegaran et al.

Dynamic networks -- networks that change over time -- can be categorized into two types: offline dynamic networks, where all states of the network are known, and online dynamic networks, where only the past states of the network are known. Research on staging animated transitions in dynamic networks has focused more on offline data, where rendering strategies can take into account past and future states of the network. Rendering online dynamic networks is a more challenging problem since it requires a balance between timeliness for monitoring tasks -- so that the animations do not lag too far behind the events -- and clarity for comprehension tasks -- to minimize simultaneous changes that may be difficult to follow. To illustrate the challenges placed by these requirements, we explore three strategies to stage animations for online dynamic networks: time-based, event-based, and a new hybrid approach that we introduce by combining the advantages of the first two. We illustrate the advantages and disadvantages of each strategy in representing low- and high-throughput data and conduct a user study involving monitoring and comprehension of dynamic networks. We also conduct a follow-up, a think-aloud study combining monitoring and comprehension with experts in dynamic network visualization. Our findings show that animation staging strategies that emphasize comprehension do better for participant response times and accuracy. However, the notion of ``comprehension'' is not always clear when it comes to complex changes in highly dynamic networks, requiring some iteration in staging that the hybrid approach affords. Based on our results, we make recommendations for balancing event-based and time-based parameters for our hybrid approach.

Suyun Bae, Federico Rossi, Joshua Vander Hook et al.

Autonomous multi-robot systems, where a team of robots shares information to perform tasks that are beyond an individual robot's abilities, hold great promise for a number of applications, such as planetary exploration missions. Each robot in a multi-robot system that uses the shared-world coordination paradigm autonomously schedules which robot should perform a given task, and when, using its worldview--the robot's internal representation of its belief about both its own state, and other robots' states. A key problem for operators is that robots' worldviews can fall out of sync (often due to weak communication links), leading to desynchronization of the robots' scheduling decisions and inconsistent emergent behavior (e.g., tasks not performed, or performed by multiple robots). Operators face the time-consuming and difficult task of making sense of the robots' scheduling decisions, detecting de-synchronizations, and pinpointing the cause by comparing every robot's worldview. To address these challenges, we introduce MOSAIC Viewer, a visual analytics system that helps operators (i) make sense of the robots' schedules and (ii) detect and conduct a root cause analysis of the robots' desynchronized worldviews. Over a year-long partnership with roboticists at the NASA Jet Propulsion Laboratory, we conduct a formative study to identify the necessary system design requirements and a qualitative evaluation with 12 roboticists. We find that MOSAIC Viewer is faster- and easier-to-use than the users' current approaches, and it allows them to stitch low-level details to formulate a high-level understanding of the robots' schedules and detect and pinpoint the cause of the desynchronized worldviews.

Jianping Kelvin Li, Kwan-Liu Ma

We present P6, a declarative language for building high performance visual analytics systems through its support for specifying and integrating machine learning and interactive visualization methods. As data analysis methods based on machine learning and artificial intelligence continue to advance, a visual analytics solution can leverage these methods for better exploiting large and complex data. However, integrating machine learning methods with interactive visual analysis is challenging. Existing declarative programming libraries and toolkits for visualization lack support for coupling machine learning methods. By providing a declarative language for visual analytics, P6 can empower more developers to create visual analytics applications that combine machine learning and visualization methods for data analysis and problem solving. Through a variety of example applications, we demonstrate P6's capabilities and show the benefits of using declarative specifications to build visual analytics systems. We also identify and discuss the research opportunities and challenges for declarative visual analytics.

Takanori Fujiwara, Shilpika, Naohisa Sakamoto et al.

Data-driven problem solving in many real-world applications involves analysis of time-dependent multivariate data, for which dimensionality reduction (DR) methods are often used to uncover the intrinsic structure and features of the data. However, DR is usually applied to a subset of data that is either single-time-point multivariate or univariate time-series, resulting in the need to manually examine and correlate the DR results out of different data subsets. When the number of dimensions is large either in terms of the number of time points or attributes, this manual task becomes too tedious and infeasible. In this paper, we present MulTiDR, a new DR framework that enables processing of time-dependent multivariate data as a whole to provide a comprehensive overview of the data. With the framework, we employ DR in two steps. When treating the instances, time points, and attributes of the data as a 3D array, the first DR step reduces the three axes of the array to two, and the second DR step visualizes the data in a lower-dimensional space. In addition, by coupling with a contrastive learning method and interactive visualizations, our framework enhances analysts' ability to interpret DR results. We demonstrate the effectiveness of our framework with four case studies using real-world datasets.

Takanori Fujiwara, Jian Zhao, Francine Chen et al.

A common network analysis task is comparison of two networks to identify unique characteristics in one network with respect to the other. For example, when comparing protein interaction networks derived from normal and cancer tissues, one essential task is to discover protein-protein interactions unique to cancer tissues. However, this task is challenging when the networks contain complex structural (and semantic) relations. To address this problem, we design ContraNA, a visual analytics framework leveraging both the power of machine learning for uncovering unique characteristics in networks and also the effectiveness of visualization for understanding such uniqueness. The basis of ContraNA is cNRL, which integrates two machine learning schemes, network representation learning (NRL) and contrastive learning (CL), to generate a low-dimensional embedding that reveals the uniqueness of one network when compared to another. ContraNA provides an interactive visualization interface to help analyze the uniqueness by relating embedding results and network structures as well as explaining the learned features by cNRL. We demonstrate the usefulness of ContraNA with two case studies using real-world datasets. We also evaluate through a controlled user study with 12 participants on network comparison tasks. The results show that participants were able to both effectively identify unique characteristics from complex networks and interpret the results obtained from cNRL.

Siwei Fu, Jian Zhao, Linping Yuan et al.

Comparative analysis of event sequence data is essential in many application domains, such as website design and medical care. However, analysts often face two challenges: they may not always know which sets of event sequences in the data are useful to compare, and the comparison needs to be achieved at different granularity, due to the volume and complexity of the data. This paper presents, ICE, an interactive visualization that allows analysts to explore an event sequence dataset, and identify promising sets of event sequences to compare at both the pattern and sequence levels. More specifically, ICE incorporates a multi-level matrix-based visualization for browsing the entire dataset based on the prefixes and suffixes of sequences. To support comparison at multiple levels, ICE employs the unit visualization technique, and we further explore the design space of unit visualizations for event sequence comparison tasks. Finally, we demonstrate the effectiveness of ICE with three real-world datasets from different domains.

Takanori Fujiwara, Jian Zhao, Francine Chen et al.

Identifying unique characteristics in a network through comparison with another network is an essential network analysis task. For example, with networks of protein interactions obtained from normal and cancer tissues, we can discover unique types of interactions in cancer tissues. This analysis task could be greatly assisted by contrastive learning, which is an emerging analysis approach to discover salient patterns in one dataset relative to another. However, existing contrastive learning methods cannot be directly applied to networks as they are designed only for high-dimensional data analysis. To address this problem, we introduce a new analysis approach called contrastive network representation learning (cNRL). By integrating two machine learning schemes, network representation learning and contrastive learning, cNRL enables embedding of network nodes into a low-dimensional representation that reveals the uniqueness of one network compared to another. Within this approach, we also design a method, named i-cNRL, which offers interpretability in the learned results, allowing for understanding which specific patterns are only found in one network. We demonstrate the effectiveness of i-cNRL for network comparison with multiple network models and real-world datasets. Furthermore, we compare i-cNRL and other potential cNRL algorithm designs through quantitative and qualitative evaluations.

Yiran Li, Takanori Fujiwara, Yong K. Choi et al.

There is a growing trend of applying machine learning methods to medical datasets in order to predict patients' future status. Although some of these methods achieve high performance, challenges still exist in comparing and evaluating different models through their interpretable information. Such analytics can help clinicians improve evidence-based medical decision making. In this work, we develop a visual analytics system that compares multiple models' prediction criteria and evaluates their consistency. With our system, users can generate knowledge on different models' inner criteria and how confidently we can rely on each model's prediction for a certain patient. Through a case study of a publicly available clinical dataset, we demonstrate the effectiveness of our visual analytics system to assist clinicians and researchers in comparing and quantitatively evaluating different machine learning methods.

Rongchen Guo, Takanori Fujiwara, Yiran Li et al.

Machine learning for data-driven diagnosis has been actively studied in medicine to provide better healthcare. Supporting analysis of a patient cohort similar to a patient under treatment is a key task for clinicians to make decisions with high confidence. However, such analysis is not straightforward due to the characteristics of medical records: high dimensionality, irregularity in time, and sparsity. To address this challenge, we introduce a method for similarity calculation of medical records. Our method employs event and sequence embeddings. While we use an autoencoder for the event embedding, we apply its variant with the self-attention mechanism for the sequence embedding. Moreover, in order to better handle the irregularity of data, we enhance the self-attention mechanism with consideration of different time intervals. We have developed a visual analytics system to support comparative studies of patient records. To make a comparison of sequences with different lengths easier, our system incorporates a sequence alignment method. Through its interactive interface, the user can quickly identify patients of interest and conveniently review both the temporal and multivariate aspects of the patient records. We demonstrate the effectiveness of our design and system with case studies using a real-world dataset from the neonatal intensive care unit of UC Davis.

Qi Wu, Tyson Neuroth, Oleg Igouchkine et al.

The use of adaptive workflow management for in situ visualization and analysis has been a growing trend in large-scale scientific simulations. However, coordinating adaptive workflows with traditional procedural programming languages can be difficult because system flow is determined by unpredictable scientific phenomena, which often appear in an unknown order and can evade event handling. This makes the implementation of adaptive workflows tedious and error-prone. Recently, reactive and declarative programming paradigms have been recognized as well-suited solutions to similar problems in other domains. However, there is a dearth of research on adapting these approaches to in situ visualization and analysis. With this paper, we present a language design and runtime system for developing adaptive systems through a declarative and reactive programming paradigm. We illustrate how an adaptive workflow programming system is implemented using our approach and demonstrate it with a use case from a combustion simulation.

Suraj P. Kesavan, Takanori Fujiwara, Jianping Kelvin Li et al.

Understanding and tuning the performance of extreme-scale parallel computing systems demands a streaming approach due to the computational cost of applying offline algorithms to vast amounts of performance log data. Analyzing large streaming data is challenging because the rate of receiving data and limited time to comprehend data make it difficult for the analysts to sufficiently examine the data without missing important changes or patterns. To support streaming data analysis, we introduce a visual analytic framework comprising of three modules: data management, analysis, and interactive visualization. The data management module collects various computing and communication performance metrics from the monitored system using streaming data processing techniques and feeds the data to the other two modules. The analysis module automatically identifies important changes and patterns at the required latency. In particular, we introduce a set of online and progressive analysis methods for not only controlling the computational costs but also helping analysts better follow the critical aspects of the analysis results. Finally, the interactive visualization module provides the analysts with a coherent view of the changes and patterns in the continuously captured performance data. Through a multi-faceted case study on performance analysis of parallel discrete-event simulation, we demonstrate the effectiveness of our framework for identifying bottlenecks and locating outliers.

Chuan Wang, Xumeng Wang, Kwan-Liu Ma

Deep Recurrent Neural Networks (RNN) is increasingly used in decision-making with temporal sequences. However, understanding how RNN models produce final predictions remains a major challenge. Existing work on interpreting RNN models for sequence predictions often focuses on explaining predictions for individual data instances (e.g., patients or students). Because state-of-the-art predictive models are formed with millions of parameters optimized over millions of instances, explaining predictions for single data instances can easily miss a bigger picture. Besides, many outperforming RNN models use multi-hot encoding to represent the presence/absence of features, where the interpretability of feature value attribution is missing. We present ViSFA, an interactive system that visually summarizes feature attribution over time for different feature values. ViSFA scales to large data such as the MIMIC dataset containing the electronic health records of 1.2 million high-dimensional temporal events. We demonstrate that ViSFA can help us reason RNN prediction and uncover insights from data by distilling complex attribution into compact and easy-to-interpret visualizations.

Suyun "Sandra" Bae, Oh-Hyun Kwon, Senthil Chandrasegaran et al.

Mind mapping is a popular way to explore a design space in creative thinking exercises, allowing users to form associations between concepts. Yet, most existing digital tools for mind mapping focus on authoring and organization, with little support for addressing the challenges of mind mapping such as stagnation and design fixation. We present Spinneret, a functional approach to aid mind mapping by providing suggestions based on a knowledge graph. Spinneret uses biased random walks to explore the knowledge graph in the neighborhood of an existing concept node in the mind map, and provides "suggestions" for the user to add to the mind map. A comparative study with a baseline mind-mapping tool reveals that participants created more diverse and distinct concepts with Spinneret, and reported that the suggestions inspired them to think of ideas they would otherwise not have explored.

Joyce Ma, Kwan-Liu Ma, Jennifer Frazier

This study describes a detailed analysis of museum visitors' decoding process as they used a visualization designed to support exploration of a large, complex dataset. Quantitative and qualitative analyses revealed that it took, on average, 43 seconds for visitors to decode enough of the visualization to see patterns and relationships in the underlying data represented, and 54 seconds to arrive at their first correct data interpretation. Furthermore, visitors decoded throughout and not only upon initial use of the visualization. The study analyzed think-aloud data to identify issues visitors had mapping the visual representations to their intended referents, examine why they occurred, and consider if and how these decoding issues were resolved. The paper also describes how multiple visual encodings both helped and hindered decoding and concludes with implications on the design and adaptation of visualizations for informal science learning venues.

Keshav Dasu, Kwan-Liu Ma, Joyce Ma et al.

We examine the application of narrative strategies to present a complex and unfamiliar metagenomics dataset to the public in a science museum. Our dataset contains information about microbial gene expressions that scientists use to infer the behavior of microbes. This exhibit had three goals: to inform (the) public about microbes' behavior, cycles, and patterns; to link their behavior to the concept of gene expression; and to highlight scientists' use of gene expression data to understand the role of microbes. To address these three goals, we created a visualization with three narrative layers, each layer corresponding to a goal. This study presented us with an opportunity to assess existing frameworks for narrative visualization in a naturalistic setting. We present three successive rounds of design and evaluation of our attempts to engage visitors with complex data through narrative visualization. We highlight our design choices and their underlying rationale based on extant theories. We conclude that a central animation based on a curated dataset could successfully achieve our first goal, i.e., to communicate the aggregate behavior and interactions of microbes. We failed to achieve our second goal and had limited success with the third goal. Overall, this study highlights the challenges of telling multi-layered stories and the need for new frameworks for communicating layered stories in public settings.

Takanori Fujiwara, Jia-Kai Chou, Shilpika et al.

Dimensionality reduction (DR) methods are commonly used for analyzing and visualizing multidimensional data. However, when data is a live streaming feed, conventional DR methods cannot be directly used because of their computational complexity and inability to preserve the projected data positions at previous time points. In addition, the problem becomes even more challenging when the dynamic data records have a varying number of dimensions as often found in real-world applications. This paper presents an incremental DR solution. We enhance an existing incremental PCA method in several ways to ensure its usability for visualizing streaming multidimensional data. First, we use geometric transformation and animation methods to help preserve a viewer's mental map when visualizing the incremental results. Second, to handle data dimension variants, we use an optimization method to estimate the projected data positions, and also convey the resulting uncertainty in the visualization. We demonstrate the effectiveness of our design with two case studies using real-world datasets.