Peder A. Olsen

Margaret Capetz, Swati Sharma, Rafael Padilha et al.

Mitigating climate change requires transforming agriculture to minimize environ mental impact and build climate resilience. Regenerative agricultural practices enhance soil organic carbon (SOC) levels, thus improving soil health and sequestering carbon. A challenge to increasing regenerative agriculture practices is cheaply measuring SOC over time and understanding how SOC is affected by regenerative agricultural practices and other environmental factors and farm management practices. To address this challenge, we introduce an AI-driven Soil Organic Carbon Copilot that automates the ingestion of complex multi-resolution, multi-modal data to provide large-scale insights into soil health and regenerative practices. Our data includes extreme weather event data (e.g., drought and wildfire incidents), farm management data (e.g., cropland information and tillage predictions), and SOC predictions. We find that integrating public data and specialized models enables large-scale, localized analysis for sustainable agriculture. In comparisons of agricultural practices across California counties, we find evidence that diverse agricultural activity may mitigate the negative effects of tillage; and that while extreme weather conditions heavily affect SOC, composting may mitigate SOC loss. Finally, implementing role-specific personas empowers agronomists, farm consultants, policymakers, and other stakeholders to implement evidence-based strategies that promote sustainable agriculture and build climate resilience.

Ishita Bansal, Peder Olsen, Roberto Estevão

Italian ryegrass is a grass weed commonly found in winter wheat fields that are competitive with winter wheat for moisture and nutrients. Ryegrass can cause substantial reductions in yield and grain quality if not properly controlled with the use of herbicides. To control the cost and environmental impact we detect weeds in drone and satellite imagery. Satellite imagery is too coarse to be used for precision spraying, but can aid in planning drone flights and treatments. Drone images on the other hand have sufficiently good resolution for precision spraying. However, ryegrass is hard to distinguish from the crop and annotation requires expert knowledge. We used the Python segmentation models library to test more than 600 different neural network architectures for weed segmentation in drone images and we map accuracy versus the cost of the model prediction for these. Our best system applies herbicides to over 99% of the weeds while only spraying an area 30% larger than the annotated weed area. These models yield large savings if the weed covers a small part of the field.

Arif Masrur, Peder A. Olsen, Paul R. Adler et al.

Unmanned Aircraft Systems (UAS) and satellites are key data sources for precision agriculture, yet each presents trade-offs. Satellite data offer broad spatial, temporal, and spectral coverage but lack the resolution needed for many precision farming applications, while UAS provide high spatial detail but are limited by coverage and cost, especially for hyperspectral data. This study presents a novel framework that fuses satellite and UAS imagery using super-resolution methods. By integrating data across spatial, spectral, and temporal domains, we leverage the strengths of both platforms cost-effectively. We use estimation of cover crop biomass and nitrogen (N) as a case study to evaluate our approach. By spectrally extending UAS RGB data to the vegetation red edge and near-infrared regions, we generate high-resolution Sentinel-2 imagery and improve biomass and N estimation accuracy by 18% and 31%, respectively. Our results show that UAS data need only be collected from a subset of fields and time points. Farmers can then 1) enhance the spectral detail of UAS RGB imagery; 2) increase the spatial resolution by using satellite data; and 3) extend these enhancements spatially and across the growing season at the frequency of the satellite flights. Our SRCNN-based spectral extension model shows considerable promise for model transferability over other cropping systems in the Upper and Lower Chesapeake Bay regions. Additionally, it remains effective even when cloud-free satellite data are unavailable, relying solely on the UAS RGB input. The spatial extension model produces better biomass and N predictions than models built on raw UAS RGB images. Once trained with targeted UAS RGB data, the spatial extension model allows farmers to stop repeated UAS flights. While we introduce super-resolution advances, the core contribution is a lightweight and scalable system for affordable on-farm use.

Angela Busheska, Vikram Iyer, Bruno Silva et al.

Understanding land use over time is critical to tracking events related to climate change, like deforestation. However, satellite-based remote sensing tools which are used for monitoring struggle to differentiate vegetation types in farms and orchards from forests. We observe that metrics such as the Normalized Difference Vegetation Index (NDVI), based on plant photosynthesis, have unique temporal signatures that reflect agricultural practices and seasonal cycles. We analyze yearly NDVI changes on 20 farms for 10 unique crops. Initial results show that NDVI curves are coherent with agricultural practices, are unique to each crop, consistent globally, and can differentiate farms from forests. We develop a novel longitudinal NDVI dataset for the state of California from 2020-2023 with 500~m resolution and over 70 million points. We use this to develop the TerraTrace platform, an end-to-end analytic tool that classifies land use using NDVI signatures and allows users to query the system through an LLM chatbot and graphical interface.

Mingmin Zhao, Peder A. Olsen, Ranveer Chandra

This paper presents a neural-network-based solution to recover pixels occluded by clouds in satellite images. We leverage radio frequency (RF) signals in the ultra/super-high frequency band that penetrate clouds to help reconstruct the occluded regions in multispectral images. We introduce the first multi-modal multi-temporal cloud removal model. Our model uses publicly available satellite observations and produces daily cloud-free images. Experimental results show that our system significantly outperforms baselines by 8dB in PSNR. We also demonstrate use cases of our system in digital agriculture, flood monitoring, and wildfire detection. We will release the processed dataset to facilitate future research.

Min-hwan Oh, Peder Olsen, Karthikeyan Natesan Ramamurthy

Phenotyping is the process of measuring an organism's observable traits. Manual phenotyping of crops is a labor-intensive, time-consuming, costly, and error prone process. Accurate, automated, high-throughput phenotyping can relieve a huge burden in the crop breeding pipeline. In this paper, we propose a scalable, high-throughput approach to automatically count and segment panicles (heads), a key phenotype, from aerial sorghum crop imagery. Our counting approach uses the image density map obtained from dot or region annotation as the target with a novel deep convolutional neural network architecture. We also propose a novel instance segmentation algorithm using the estimated density map, to identify the individual panicles in the presence of occlusion. With real Sorghum aerial images, we obtain a mean absolute error (MAE) of 1.06 for counting which is better than using well-known crowd counting approaches such as CCNN, MCNN and CSRNet models. The instance segmentation model also produces respectable results which will be ultimately useful in reducing the manual annotation workload for future data.

Min-hwan Oh, Peder A. Olsen, Karthikeyan Natesan Ramamurthy

Research in neural networks in the field of computer vision has achieved remarkable accuracy for point estimation. However, the uncertainty in the estimation is rarely addressed. Uncertainty quantification accompanied by point estimation can lead to a more informed decision, and even improve the prediction quality. In this work, we focus on uncertainty estimation in the domain of crowd counting. With increasing occurrences of heavily crowded events such as political rallies, protests, concerts, etc., automated crowd analysis is becoming an increasingly crucial task. The stakes can be very high in many of these real-world applications. We propose a scalable neural network framework with quantification of decomposed uncertainty using a bootstrap ensemble. We demonstrate that the proposed uncertainty quantification method provides additional insight to the crowd counting problem and is simple to implement. We also show that our proposed method exhibits the state of the art performances in many benchmark crowd counting datasets.

Amit Dhurandhar, Karthikeyan Shanmugam, Ronny Luss et al.

In this paper, we propose a new method called ProfWeight for transferring information from a pre-trained deep neural network that has a high test accuracy to a simpler interpretable model or a very shallow network of low complexity and a priori low test accuracy. We are motivated by applications in interpretability and model deployment in severely memory constrained environments (like sensors). Our method uses linear probes to generate confidence scores through flattened intermediate representations. Our transfer method involves a theoretically justified weighting of samples during the training of the simple model using confidence scores of these intermediate layers. The value of our method is first demonstrated on CIFAR-10, where our weighting method significantly improves (3-4%) networks with only a fraction of the number of Resnet blocks of a complex Resnet model. We further demonstrate operationally significant results on a real manufacturing problem, where we dramatically increase the test accuracy of a CART model (the domain standard) by roughly 13%.

Jialei Wang, Peder A. Olsen, Andrew R. Conn et al.

We consider the problem of removing and replacing clouds in satellite image sequences, which has a wide range of applications in remote sensing. Our approach first detects and removes the cloud-contaminated part of the image sequences. It then recovers the missing scenes from the clean parts using the proposed "TECROMAC" (TEmporally Contiguous RObust MAtrix Completion) objective. The objective function balances temporal smoothness with a low rank solution while staying close to the original observations. The matrix whose the rows are pixels and columnsare days corresponding to the image, has low-rank because the pixels reflect land-types such as vegetation, roads and lakes and there are relatively few variations as a result. We provide efficient optimization algorithms for TECROMAC, so we can exploit images containing millions of pixels. Empirical results on real satellite image sequences, as well as simulated data, demonstrate that our approach is able to recover underlying images from heavily cloud-contaminated observations.

Aleksandr Aravkin, Stephen Becker, Volkan Cevher et al.

We introduce a new convex formulation for stable principal component pursuit (SPCP) to decompose noisy signals into low-rank and sparse representations. For numerical solutions of our SPCP formulation, we first develop a convex variational framework and then accelerate it with quasi-Newton methods. We show, via synthetic and real data experiments, that our approach offers advantages over the classical SPCP formulations in scalability and practical parameter selection.