Kesheng Wang

Al Zadid Sultan Bin Habib, Kesheng Wang, Mary-Anne Hartley et al.

Effective analysis of tabular data still poses a significant problem in deep learning, mainly because features in tabular datasets are often heterogeneous and have different levels of relevance. This work introduces TabSeq, a novel framework for the sequential ordering of features, addressing the vital necessity to optimize the learning process. Features are not always equally informative, and for certain deep learning models, their random arrangement can hinder the model's learning capacity. Finding the optimum sequence order for such features could improve the deep learning models' learning process. The novel feature ordering technique we provide in this work is based on clustering and incorporates both local ordering and global ordering. It is designed to be used with a multi-head attention mechanism in a denoising autoencoder network. Our framework uses clustering to align comparable features and improve data organization. Multi-head attention focuses on essential characteristics, whereas the denoising autoencoder highlights important aspects by rebuilding from distorted inputs. This method improves the capability to learn from tabular data while lowering redundancy. Our research, demonstrating improved performance through appropriate feature sequence rearrangement using raw antibody microarray and two other real-world biomedical datasets, validates the impact of feature ordering. These results demonstrate that feature ordering can be a viable approach to improved deep learning of tabular data.

Kesheng Wang, Xiaoyu Chen, Chunlei He et al.

In the medical image analysis field, precise quantification of curve tortuosity plays a critical role in the auxiliary diagnosis and pathological assessment of various diseases. In this study, we propose a novel framework for tortuosity quantification and demonstrate its effectiveness through the evaluation of meibomian gland atrophy uniformity,serving as a representative application scenario. We introduce an information entropy-based tortuosity quantification framework that integrates probability modeling with entropy theory and incorporates domain transformation of curve data. Unlike traditional methods such as curvature or arc-chord ratio, this approach evaluates the tortuosity of a target curve by comparing it to a designated reference curve. Consequently, it is more suitable for tortuosity assessment tasks in medical data where biologically plausible reference curves are available, providing a more robust and objective evaluation metric without relying on idealized straight-line comparisons. First, we conducted numerical simulation experiments to preliminarily assess the stability and validity of the method. Subsequently, the framework was applied to quantify the spatial uniformity of meibomian gland atrophy and to analyze the difference in this uniformity between \textit{Demodex}-negative and \textit{Demodex}-positive patient groups. The results demonstrated a significant difference in tortuosity-based uniformity between the two groups, with an area under the curve of 0.8768, sensitivity of 0.75, and specificity of 0.93. These findings highlight the clinical utility of the proposed framework in curve tortuosity analysis and its potential as a generalizable tool for quantitative morphological evaluation in medical diagnostics.

Kesheng Wang, Kunhui Xu, Xiaoyu Chen et al.

Automatic measurements of tear meniscus height (TMH) have been achieved by using deep learning techniques; however, annotation is significantly influenced by subjective factors and is both time-consuming and labor-intensive. In this paper, we introduce an automatic TMH measurement technique based on edge detection-assisted annotation within a deep learning framework. This method generates mask labels less affected by subjective factors with enhanced efficiency compared to previous annotation approaches. For improved segmentation of the pupil and tear meniscus areas, the convolutional neural network Inceptionv3 was first implemented as an image quality assessment model, effectively identifying higher-quality images with an accuracy of 98.224%. Subsequently, by using the generated labels, various algorithms, including Unet, ResUnet, Deeplabv3+FcnResnet101, Deeplabv3+FcnResnet50, FcnResnet50, and FcnResnet101 were trained, with Unet demonstrating the best performance. Finally, Unet was used for automatic pupil and tear meniscus segmentation to locate the center of the pupil and calculate TMH,respectively. An evaluation of the mask quality predicted by Unet indicated a Mean Intersection over Union of 0.9362, a recall of 0.9261, a precision of 0.9423, and an F1-Score of 0.9326. Additionally, the TMH predicted by the model was assessed, with the fitting curve represented as y= 0.982x-0.862, an overall correlation coefficient of r^2=0.961 , and an accuracy of 94.80% (237/250). In summary, the algorithm can automatically screen images based on their quality,segment the pupil and tear meniscus areas, and automatically measure TMH. Measurement results using the AI algorithm demonstrate a high level of consistency with manual measurements, offering significant support to clinical doctors in diagnosing dry eye disease.